Population genetic structure of the prosobranch Nassarius reticulatus (L.) in a ria seascape (NW Iberian Peninsula) as revealed by RAPD analysis

Randomly amplified polymorphic DNA (RAPD) banding patterns were compared between samples of the netted dogwhelk Nassarius reticulatus from 11 locations along the NW Iberian Peninsula coast. To detect if rias (estuaries formed by drowned river valleys) might promote genetic differentiation, five sampling sites were located within a ria (ria of Muros) and the remaining six were scattered along open-coast areas at increasing distances from the ria mouth. Population differentiation statistics (Φ-values) were estimated using a hierarchical analysis of molecular variance (AMOVA) with samples sorted into two groups: open-coast and ria populations. Despite a high potential to disperse, AMOVA demonstrated a modest, statistically significant genetic heterogeneity among N. reticulatus populations. Most of the genetic structure resided in differences among open-coast populations; ria populations were genetically homogeneous. No obvious geographical pattern was detected for the pairwise genetic distances (non-metric multidimensional scaling; UPGMA tree; Mantel test). Unlike previous studies with other species at a variety of estuarine systems other than rias, there was no evidence that the ria of Muros may enhance the genetic divergence of N. reticulatus populations. This discrepancy is discussed in relation to the biological features of the species (high dispersal potential and a preference for mid-low estuarine habitat) and the strong hydrographic connectivity between ria and neighbouring off-shore waters.     

Mercury accumulation in soils and plants in the Almadén mining district, Spain: one of the most contaminated sites on Earth

Although mercury (Hg) mining in the Almadén district ceased in May 2002, the consequences of 2000 years of mining in the district has resulted in the dissemination of Hg into the surrounding environment where it poses an evident risk to biota and human health. This risk needs to be properly evaluated. The uptake of Hg has been found to be plant-specific. To establish the different manners in which plants absorb Hg, we carried out a survey of Hg levels in the soils and plants in the most representative habitats of this Mediterranean area and found that the Hg concentrations varied greatly and were dependent on the sample being tested (0.13–2,695 μg g⁻¹ Hg). For example, the root samples had concentrations ranging from 0.06 (Oenanthe crocata, Rumex induratus) to 1095 (Polypogon monspeliensis) μg g⁻¹ Hg, while in the leaf samples, the range was from 0.16 (Cyperus longus) to 1278 (Polypogon monspeliensis) μg g⁻¹ Hg. There are four well-differentiated patterns of Hg uptake: (1) the rate of uptake is constant, independent of Hg concentration in the soil (e.g., Pistacia lentiscus, Quercus rotundifolia); (2) after an initial linear relationship between uptake and soil concentration, no further increase in Hg_plant is observed (e.g., Asparagus acutifolius, Cistus ladanifer); (3) no increase in uptake is recorded until a threshold is surpassed, and thereafter a linear relationship between Hg_plant and Hg_soil is established (e.g., Rumex bucephalophorus, Cistus crispus); (4) there is no relationship between Hg_plant and Hg_soil (e.g., Oenanthe crocata and Cistus monspeliensis). Overall, the Hg concentrations found in plants from the Almadén district clearly reflect the importance of contamination processes throughout the study region.     

Pigment composition and size distribution of phytoplankton in a confined Mediterranean salt marsh ecosystem

Pigment composition and size distribution of phytoplankton were analysed in a group of Mediterranean salt marshes, where hydrology is dominated by sudden inputs during sea storms, followed by long periods of confinement. These marshes are characterized by a low inorganic–organic nutrient ratio, and inorganic nitrogen is especially scarce due to denitrification. Nutrients were the main factor affecting phytoplankton biomass, while zooplankton grazing did not control either phytoplankton community composition, or their size distribution. The relative abundance of the different phytoplankton groups was analysed by correspondence analysis using the pigment composition measured by high-performance liquid chromatography (HPLC) and analysed with the CHEMTAX programme. In this analysis, phytoplankton pigment composition was correlated with two nutrient gradients. The first gradient was the ratio of nitrate–total nitrogen (TN), since the different phytoplankton groups were distributed according to their eco–physiological differences in nitrogen uptake. The second gradient was correlated with total nutrient loading. Biomass size distributions frequently showed a lack of intermediate sized nanophytoplankton (2.5–4 μm in diameter), and the importance of this lack of intermediate sizes correlated with dinoflagellate biomass. These results suggested that in confined environments, where nutrients are mainly in an organic form, dinoflagellates take advantage of their mixotrophy, by competing and grazing on smaller phytoplankters simultaneously.     

Variability in grazer-mediated defensive responses of green and red macroalgae on the south coast of South Africa

Variabilities in the responses of several South African red and green macroalgae to direct grazing and the responses of one green alga to cues from grazers were tested. We used two feeding experiments: (1) testing the induced responses of three red and one green algae to direct grazing by mesograzers and (2) a multi-treatment experiment, in which the direct and indirect effects of one macrograzer species on the green alga Codium platylobium were assessed. Consumption rates were assessed in feeding assays with intact algal pieces and with agar pellets containing non-polar extracts of the test algae. Defensive responses were induced for intact pieces of Galaxaura diessingiana, but were not induced in pellets, suggesting either morphological defence or chemical defence using polar compounds other than polyphenols. In contrast, exposure to grazing stimulated consumption of Gracilaria capensis and Hypnea spicifera by another grazing species. In the multi-treatment experiment, waterborne cues from both grazing and non-grazing snails induced defensive algal traits in C. platylobium. We suggest that inducible defences among macroalgae are not restricted to brown algae, but that both the responses of algae to grazers and of grazers to the defences of macroalgae are intrinsically variable and complex.     

Seascape-dependent subtidal-intertidal trophic linkages

In this study, we test in southern New Zealand a conceptual model of food web linkage that is seascape dependent, which can explain some of the variability in rocky shore community structure among sites and coasts. Using a comparative-experimental approach at local and distant sites we demonstrate that mobile subtidal predators (fish and crabs) can exert strong predation pressure on small mussels in the low tidal zone, but only in sites where the seascape includes subtidal reefs. On intertidal benches with adjacent subtidal reefs (+SR), 60-100% of small (5-15 mm) transplanted mussels were removed within a day from experimental tiles on the low shore when unprotected from predation, compared to fully caged controls that had approximately 100% survival over several months. In partial cages that exclude fish but not crabs, survivorship was intermediate. In contrast, on benches without subtidal reefs (-SR) 40-100% of mussels survived for months, even if unprotected. This difference is expressed in lower cover (0-60%) of mussels on rocks at +SR benches compared to -SR benches (70-99%). The central to northern west coast of the South Island is composed mostly of -SR benches, and predation on small mussels there was low and similar to the -SR benches on the east coast, whereas the +SR benches on the east coast had much greater predation. This contrasts to other studies in New Zealand that examined only predation on larger mussels by seastars and concluded that predation is strong on the west coast and weak on the east coast. Excluding large predators from low-shore areas with new recruits for a year in one +SR site showed longer-term predation effects on their abundance and cover. Short-term sampling at the east coast sites showed that mussel settlement was greater in -SR compared to +SR sites, providing some evidence that seascapes may also affect settlement. Overall, predation depended on the local seascape and ultimately affected community structure via suppression of effective recruitment rates. This study emphasizes the importance of predation on early life stages of basal species and the influence of seascapes on top-down interactions between subtidal predators and their intertidal prey.     

Cellular damage of plant pathogenic fungi by antifungal compounds produced by Bacillus spp. isolates

The use of microorganisms as biological control agents (BCAs) has become an effective alternative to chemical means of controlling plant pathogens. The antagonistic and inhibitory activity of 71 Bacillus spp. strains, which were isolated from different Mexican sites, were tested against several phytopathogen fungi, Fusarium oxysporum, Fusarium equiseti, Fusarium avenaceum, Bipolaris spp. and Alternaria spp. From the antagonism study, the strain ELI149 showed a marked inhibition of growth against all tested fungi; therefore crude metabolites from this strain were extracted using ethyl acetate and amberlite resin and probed against the same fungi as well as strains of Mucor sp., Penicillium spp. and Paecilomyces spp. The results indicated that amberlite was more suitable for extraction of secondary metabolites with antifungal activity. Finally, observation of cell damage in the tested pathogenic fungi showed marked morphological changes on reproductive structures in all tested fungi indicating that antibiosis was the mechanism of the antagonistic effect. These results suggest that metabolites from the Bacillus strains have a wide spectrum of antibiotic activities, which can be used as biocontrol agents for controlling fungal plant diseases of agricultural importance.     

Seasonal rhythm in a Mediterranean coastal fish community as monitored by a cabled observatory

To adequately describe seasonal rhythms in habitat utilization by fish communities, observations are needed that occur at a relatively high frequency and over large temporal windows. For the first time, images collected from a cabled video-observatory (the western Mediterranean expandable SEAfloor OBservatory; OBSEA) were utilized to examine habitat utilization by coastal fishes. Over the course of a year, hourly digital images of the water column and an artificial reef were obtained during daylight hours. For each image, the total number of species, an estimate of the abundance of individuals, and the Shannon Diversity Index were quantified. A total of 22 fish species commonly associated with nearshore western Mediterranean habitats were identified, and significant spatial (water column vs. artificial reef), seasonal (spring, summer, autumn, and winter), and daily (morning, midday, and sunset) differences in habitat utilization occurred. Four species (Diplodus vulgaris, Diplodus cervinus, Diplodus sargus, and Scorpaena porcus) were associated with the artificial reef, while one species (Pagrus pagrus) chiefly occurred in the water column. Chromis chromis and Diplodus annularis occurred at the site more frequently in the winter and autumn, respectively, while 14 other species utilized the site more frequently in either the spring (8 spp) or summer (6 spp). In addition, Dentex dentex and Spicara maena occurred more frequently at sunset, while D. cervinus displayed a crepuscular rhythm (occurring more frequently in the morning and at sunset). Species diversity was highest in the summer and lowest in the winter. If not taken into account when planning in situ sampling, such seasonal and/or diel differences may lead to spurious estimates of population sizes and biodiversity. We suggest that cabled video-observatories offer a non-invasive and reliable technology for faunistic sampling and population assessment in coastal water of the Mediterranean and likely elsewhere.     

Degradation of methyl-phenanthrene isomers during bioremediation of soil contaminated by residual fuel oil

Phenanthrene and methyl-phenanthrenes are major aromatic pollutants originating in particular from fuel oil. Phenanthrene is usually degraded faster than methyl-phenanthrenes under geological and environmental conditions. Here, we report a preferential and accelerated biodegradation of methyl-phenanthrenes versus phenanthrene in soil contaminated by fuel oil. The polluted soil was mixed with sawdust and sand to form a homogenized biopile. The biopile was continuously sprayed with microbial consortia isolated from crude oil?Ccontaminated soil and treated by biosurfactants and nutritive substances for biostimulation. During a 6-month bioremediation experiment, a steady increase in the relative abundance of phenanthrene compared to methyl-phenathrenes was observed by gas chromatography?Cmass spectrometry. The increase was the highest for trimethyl-phenanthrenes, with a phenanthrene/trimethyl-phenanthrenes ratio increasing from 0.42 to 2.45. By contrast, the control, non-stimulated samples showed a ratio decrease from 0.85 to 0.11. Moreover, the results showed that the level of degradability depends on the number of methyl groups.     

Effect of the allelochemicals from the macrophyte Egeria densa on the competitive interactions of pelagic and littoral cladocerans

Macrophytes release allelochemicals, which affect pelagic cladocerans such as Daphnia. Using population growth experiments, we analysed the effects of allelochemicals from the macrophyte Egeria densa on the interaction between Daphnia mendotae and three littoral cladocerans (Diaphanosoma birgei, Macrothrix triserialis and Simocephalus mixtus). We found that allelochemicals from E. densa increased the abundance of all the tested cladocerans in spite of the presence of a competitor. This effect was stronger (nearly three to four times higher than in controls) for D. birgei and M. triserialis in the absence of D. mendotae. Independent of the presence of allelochemicals, S. mixtus, but not D. birgei and M. triserialis, reduced the abundance of D. mendotae as compared to controls. The rate of population increase (r) per day was significantly elevated due to the presence of Egeria’s allelochemicals (from 0.07–0.16?d^?1 without allelochemicals against 0.12–0.24?d^?1 with allelochemicals). In our competition experiments, the rates of population increase of the cladocerans were lower than those in single-species cultures when cultured in the absence of allelochemicals. However, in the presence of allelochemicals this trend was not consistent. Thus, the positive effects of Egeria’s allelochemicals over the cladoceran populations may enhance the grazing pressure on phytoplankton.