Characterizing source-sink dynamics with genetic parentage assignments

Source-sink dynamics have been suggested to characterize the population structure of many species, but the prevalence of source-sink systems in nature is uncertain because of inherent challenges in estimating migration rates among populations. Migration rates are often difficult to estimate directly with demographic methods, and indirect genetic methods are subject to a variety of assumptions that are difficult to meet or to apply to evolutionary timescales. Furthermore, such methods cannot be rigorously applied to high-gene-flow species. Here, we employ genetic parentage assignments in conjunction with demographic simulations to infer the level of immigration into a putative sink population. We use individual-based demographic models to estimate expected distributions of parent-offspring dyads under competing sink and closed-population models. By comparing the actual number of parent-offspring dyads (identified from multilocus genetic profiles) in a random sample of individuals taken from a population to expectations under these two contrasting demographic models, it is possible to estimate the rate of immigration and test hypotheses related to the role of immigration on population processes on an ecological timescale. The difference in the expected number of parent-offspring dyads between the two population models was greatest when immigration into the sink population was high, indicating that unlike traditional population genetic inference models, the highest degree of statistical power is achieved for the approach presented here when migration rates are high. We used the proposed genetic parentage approach to demonstrate that a threatened population of Marbled Murrelets (Braclhyrarmphus marmotus) appears to be supplemented by a low level of immigration (approximately 2-6% annually) from other populations.     

Negative effects of vertebrate herbivores on invertebrates in a coastal dune community

Although competition has been a major focus in ecology for the past century, most empirical and theoretical studies in this area have emphasized interactions between closely related species. However, there is growing evidence that negative interactions among distantly related taxa also occur and may be far more important than previously thought. In this study, we took advantage of an 11-year-old replicated vertebrate-exclosure experiment in a coastal dune community in northern California, USA, to examine the effects of the two most common vertebrate herbivores (jackrabbits and black-tailed deer) on the abundance of the three most visible invertebrate herbivores (two snail, a moth, and a grasshopper species). Our results indicate that four of the six possible pairwise interactions were significantly negative for the invertebrates. Jackrabbits reduced the abundances of snails by 44-75%, tiger moth caterpillars by 36%, and grasshoppers by 62%. Deer reduced the abundances of snails by 32%, increased the abundances of caterpillars by 31%, and had no measurable effect on grasshopper abundance. Our data also revealed that jackrabbits significantly decreased the volume of forbs and common shrubs and the flowering by grasses in our study plots. We were unable to detect an effect of deer on these measures of vegetation. These results suggest that by changing vegetation, jackrabbits may reduce invertebrate populations that are limited by food, protective structures, or microclimate provided by plants. Of these three mechanisms, only shade was strongly supported as limiting snail numbers in smaller-scale manipulations. In most systems, as in this one, the number of pairs of distantly related herbivores far exceeds the number of pairs of congeners. Since interactions among distantly related herbivores may be common in many cases, these interactions are likely to be important and should receive far more attention from ecologists.     

Maryland Biological Stream Survey: Development of a Fish Index of Biotic Integrity

As a step towards determining the extent of degradation in non-tidal streams, a multi-metric Index of Biotic Integrity (IBI) based on fish assemblages was developed for the Maryland Biological Stream Survey (MBSS). The MBSS is a probability-based statewide sampling program designed to assess the status of biological resources and to evaluate the effects of anthropogenic activities. We used data from 419 MBSS sites sampled in 1994-95 to develop the IBI. Two distinct geographic strata, corresponding with ecoregional and physiographic boundaries, were identified via cluster analysis and multivariate analysis of variance (MANOVA) as supporting distinctly different species groups. Reference conditions were based on minimally degraded sites. We quantitatively evaluated the ability of various attributes of the fish assemblage (candidate metrics) to discriminate between these reference sites and sites known to be degraded, using statistical tests and classification efficiency. Provisional formulations of the IBI were selected for each region based on high classification efficiency and broad representation of fish assemblage attributes. Fish IBI scores for 1995 MBSS sites spanned a wide range of biological conditions, from good to very poor. Over all six basins sampled in 1995, half of the stream miles fell into the range of good to fair. Roughly 25% of stream miles showed some degradation. The IBI will be used in conjunction with physical and chemical data to answer critical questions about the health of Maryland streams and the relative impacts of human-induced stresses on the state's aquatic systems.     

REGIONAL NITRATE LEACHING VARIABILITY: WHAT MAKES A DIFFERENCE IN NORTHEASTERN COLORADO

ABSTRACT: The high spatial variability of nitrate concentrations in ground water of many regions is thought to be closely related to spatially-variable leaching rates from agricultural activities. To clarify the relative roles of the different nitrate leaching controlling variables under irrigated agriculture in northeastern Colorado, we conducted an extensive series of leaching simulations with the NLEAP model using best estimates of local agricultural practices. The results of these simulations were then used with GIS to estimate the spatial variability of leachate quality for a 14,000 ha area overlying the alluvial aquifer of the South Platte River. Simulations showed that in the study area, differences in soil type might lead to 5–10 kg/ha of N variation in annual leaching rates while variability due to crop rotations was as much as 65 kg-N/ha for common rotations. Land application of manure from confined animal feeding operations may account for more than 100 kg-N/ha additional leaching. For a selected index rotation, the simulated nitrogen leaching rates across the area varied from 10 to 299 kg/ha and simulated water volumes leached ranged from 13 to 76 cm/yr depending on soil type, irrigation type, and use of manure. Resulting leachate concentrations of 3.5–140 mg/l NO₃ as N were simulated. Land application of manure was found to be the most important factor determining the mass flux of nitrate leached and the combination of sprinkler irrigation and manure application yields the highest leachate concentrations.     

Investigating the Uncertainties in the Simple Mass Balance Equation for Acidity Critical Loads for Terrestrial Ecosystems in the United Kingdom

The Simple Mass Balance (SMB)equation has been developed and used as one ofthe principal methods for calculating criticalloads of acidity for forest ecosystems. Criticalloads have formed the basis for informing policyrelated to the control and abatement of emissionsof acidifying pollutants. The SMB equationrelies on a variety of assumptions and dataderived from a variety of sources. Each of thesecomponent constituents has a potential source oferror depending on the method(s) used for theirderivation and the value(s) assigned. The resultis the possibility of generating a range ofcritical load values for a single ecosystem. This paper summarises the SMB equation, examinesthe uncertainties in deriving input values andreviews other works on the key assumptions.     

The simulation of condensation removal of a heavy metal from exhaust gases onto sorbent particles

A numerical model BAEROSOL for solving the general dynamic equation (GDE) of aerosols is presented. The goal was to model the capture of volatilized metals by sorbents under incinerator-like conditions. The model is based on algorithms presented by Jacobson and Turco [Aerosol Science and Technology 22 (1995) 73]. A hybrid size bin was used to model growth and formation of particles from the continuum phase and the coagulation of existing particles. Condensation and evaporation growth were calculated in a moving size bin approach, where coagulation and nucleation was modeled in the fixed size bin model of the hybrid grid. To account for the thermodynamic equilibrium in the gas phase, a thermodynamic equilibrium code CET89 was implemented. The particle size distribution (PSD) calculated with the model was then compared to analytical solutions provided for growth, coagulation and both combined. Finally, experimental findings by Rodriguez and Hall [Waste Management 21 (2001) 589-607] were compared to the PSD predicted by the developed model and the applicability of the model under incineration conditions is discussed.     

To what extent are hepatic concentrations of heavy metals in Anguilla anguilla at a site in a contaminated estuary related to body size and age and reflected in the metallothionein concentrations?

We explored how hepatic [metal]s in Anguilla anguilla at a contaminated estuarine site are influenced by body size, age and season, and the extent that [Cu], [Cd] and [Zn]s are reflected in [metallothionein (MT)]s. Although each [metal] and [MT] increased significantly with length, weight and age, those biotic variables explained <10% of the variation in each [metal] and only 11-16% for [MT]. Seasonal changes in [Cu] and [Cd] were paralleled by [MT]. The variation in [MT] explained by Cu (42%) was greater than by Zn (16%) and Cd (13%), and seasonally lay between 43 and 69% for those metals collectively. Thus, hepatic [MT] in eels is closely correlated with hepatic [heavy metal]s. However, the great variability among [MT]s for eels of similar sizes and ages, which reflects marked variability in hepatic [heavy metal]s, means that this variable reflects imprecisely the contamination level at a particular site.     

Spatial patterns in wet and dry deposition of atmospheric mercury and trace elements in central Illinois,USA

An intensive 1-month atmospheric sampling campaign was conducted concurrently at eight monitoring sites in central Illinois, USA, from June 9 to July 3, 2011 to assess spatial patterns in wet and dry deposition of mercury and other trace elements. Summed wet deposition of mercury ranged from 3.1 to 5.4 μg/m² across sites for the total study period, while summed dry deposition of reactive mercury (gaseous oxidized mercury plus particulate bound mercury) ranged from 0.7 to 1.6 μg/m², with no statistically significant differences found spatially between northern and southern sites. Ratios of summed wet to summed dry mercury deposition across sites ranged from 2.2 to 4.9 indicating that wet deposition of mercury was dominant during the study period. Volume-weighted mean mercury concentrations in precipitation were found to be significantly higher at northern sites, while precipitation depth was significantly higher at southern sites. These results showed that substantial amounts of mercury deposition, especially wet deposition, occurred during the study period relative to typical annual wet deposition levels. Summed wet deposition of anthropogenic trace elements was much higher, compared to summed dry deposition, for sulfur, selenium, and copper, while at some sites summed dry deposition dominated summed wet deposition for lead and zinc. This study highlights that while wet deposition of Hg was dominant during this spring/summer-season study, Hg dry deposition also contributed an important fraction and should be considered for implementation in future Hg deposition monitoring studies.     

Furazolidone residues in chicken and swine tissues after feeding trials

Abstract

Broiler chickens and swine fed furazolidone in their diet were sacrificed, and samples of liver, kidney, skin/fat and muscle were harvested and analyzed for furazolidone residue. Chickens fed 200 g of furazolidone/ton of feed were withdrawn from treatment 21, 14, 7, 5, 3, or 0 days before slaughter. Birds withdrawn from medication more than 5 days prior to slaughter had no residues in any of the tissues sampled. One of the 12 birds in each of the 5 day and 3 day withdrawal groups had detectable residues in the skin/fat. Seven of the 12 birds in the 0 day withdrawal group had residues of <2 ppb in skin/fat samples. Chickens fed 400 g furazolidone/ton of feed were withdrawn from treatment 0 days before slaughter. Residues of 0.7 to 3.5 ppb were found in the skin of these birds; residues were not found in other tissues. Swine were fed 300 g furazolidone/ton of feed for 2 weeks or 150 g/ton for 5 weeks. They were withdrawn from treatment 10, 7, 5, 3, or 0 days before slaughter. Tissue samples taken from these swine did not contain detectable furazolidone residues.