Efficacy of natural biocide on control of microbial induced corrosion in oil pipelines mediated by Desulfovibrio vulgaris and Desulfovibrio gigas

We compared the efficacy of a natural biocide with four chemical tetrakishydroxymethyl phosphonium sulfonate, benzyl trimethyl ammonium chloride, and formaldehyde, glutaraldehyde, to control microbial induced corrosion in oil pipelines. The efficacy of biocides were monitored against Desulfovibrio vulgaris and Desulfovibrio gigas in experimental pipes by measuring cell counts, H2S production, Fe(II) production, production of extracellular polymeric substances and structure of biofilm. The treatment with cow urine had minimum planktonic cell counts of 3 102 CFU/mL as well as biofilm cell counts of 9 101 CFU/mL as compared with tetrakishydroxyl methyl phosphonium sulfonate, benzyl trimethyl ammonium chloride, formaldehyde and glutaraldehyde. Sulfide production was the lowest with cow urine (0.08 mmol/L), followed by tetrakishydroxymethyl phosphonium sulfonate 0.72 mmol/L. On day 90 of treatment, Fe(II) production was also found to be the lowest with cow urine. The scanning electron microscopic studies indicated that the biofilm bacteria were killed by cow urine. These results demonstrate the cow urine mediated control of microbially induced corrosion, and this is indicative of its potential as a viable substitute of toxic biocides. To the best of our knowledge, this seems to be the first report which screens possible biocidal activity by cow urine as compared to the most common biocides which oil industry is currently using.     

Response of “Alamo” switchgrass tissue chemistry and biomass to nitrogen fertilization in West Tennessee,USA

Switchgrass (Panicum virgatum) is a perennial, warm-season grass that has been identified as a potential biofuel feedstock over a large part of North America. We examined above- and belowground responses to nitrogen fertilization in “Alamo” switchgrass grown in West Tennessee, USA. The fertilizer study included a spring and fall sampling of 5-year old switchgrass grown under annual applications of 0, 67, and 202 kg N ha^?1 (as ammonium nitrate). Fertilization changed switchgrass biomass allocation as indicated by root:shoot ratios. End-of-growing season root:shoot ratios (mean ± SE) declined significantly (P ≤ 0.05) at the highest fertilizer nitrogen treatment (2.16 ± 0.08, 2.02 ± 0.18, and 0.88 ± 0.14, respectively, at 0, 67, and 202 kg N ha^?1). Fertilization also significantly increased above- and belowground nitrogen concentrations and decreased plant C:N ratios. Data are presented for coarse live roots, fine live roots, coarse dead roots, fine dead roots, and rhizomes. At the end of the growing season, there was more carbon and nitrogen stored in belowground biomass than aboveground biomass. Fertilization impacted switchgrass tissue chemistry and biomass allocation in ways that potentially impact soil carbon cycle processes and soil carbon storage.     

Persistence of atrazine impact on aneuploidy in Pacific oysters,<Emphasis Type="Italic"> Crassostrea gigas</Emphasis>

Widespread use of the herbicide atrazine has incited much research on its toxicity in aquatic systems, where it is routinely detected due to runoff from cultivated fields. Moreover, the determination of the genotoxic effect of such pollutants in the marine environment has become a major requirement for ecosystem protection. In the Pacific oyster, Crassostrea gigas, hypodiploid aneuploid cells have regularly been reported. There is a negative correlation between this phenomenon and growth, as well as evidence for a genetic basis. A positive relationship between atrazine and aneuploidy has previously been demonstrated in C. gigas adults and juveniles. To evaluate the persistence of this impact, our study examined the offspring of the same adult population previously treated with different atrazine doses (10 µg l^–1, representing a peak value found in a polluted environment and 100 µg l^–1), and a seawater control. We observed that these offspring exhibited significantly higher aneuploidy levels when their parents had been exposed to atrazine (14.9–16.9% in comparison with the control where the levels ranged from 11.4% to 12.8%). In addition, the present study examined the aneuploidy level of a sample of juveniles, previously exposed for 3.5 months to the same doses of atrazine, then transferred to non-polluted conditions for an additional period of 2.5 months; this aneuploidy level remained significantly different between the treatments applied. These results demonstrate the persistence of an atrazine impact on Pacific oyster aneuploidy in time, within and between generations, indicating that this widely used compound may represent an important factor causing at least medium-term damage to genetic material.Communicated by S.A. Poulet, Roscoff     

Body and resource size at the land–sea interface

Body size in animals varies with many parameters, amongst them taxonomic affiliation, lifestyle and ambient environment oxygen levels. Size has considerable implication to possibilities for animals; for example, parasites need to be small and top predators large. Body size and resource requirements (shell size) were investigated across the land–sea interface in hermit crabs (Crustacea: Malacostraca: Decapoda) and snails (Mollusca: Gastropoda: Prosobranchia). These are two of the few taxa to occur in the sea, on the shore and on land as residents. Both taxa are also appropriate for such an analysis as they are abundant, speciose, cohabit the same environments and are linked—gastropod shells are a critical resource to hermit crabs. Both the maximum and mean sizes of hermit crab species showed parabolic relationships with shore height, decreasing from the sublittoral and supralittoral to the eulittoral. Average maximum size of gastropods exhibited a similar intertidal minimum although variability was high. It is suggested that this pattern is robust: not only did two distantly related taxa show the same pattern, but neither region nor site contributed significantly to total variability. The mass of resources (gastropod shells) used by hermit crabs, however, showed a converse pattern. The smallest shells (relative to hermit crab body size) were used in the sublittoral and supralittoral. Response to environmental stress and predation pressure are offered as two alternate theories to explain the observed body dwarfism and resource gigantism in the intertidal zone.Communicated by J.P. Thorpe, Port Erin     

Cluster detection using Bayes factors from overparameterized cluster models

In this paper, we consider the use of a partition model to estimate regional disease rates and to detect spatial clusters. Formal inference regarding the number of partitions (or clusters) can be obtained with a reversible jump Markov chain Monte Carlo algorithm. As an alternative, we consider the ability of models with a fixed, but overly large, number of partitions to estimate regional disease rates and to provide informal inferences about the number and locations of clusters using local Bayes factors. We illustrate and compare these two approaches using data on leukemia incidence in upstate New York and data on breast cancer incidence in Wisconsin.     

Geographic shifts in the highland cooking banana (Musa spp., group AAA-EA) production in Uganda

Summary

Between 1970 and 1990 Uganda witnessed the decline of the highland cooking banana from traditional growing areas in the central region, coupled with crop expansion in the country's southwest. Apprehension that the factors leading to loss of sustainability in the central region may be replayed in extant production areas has raised concern about the future of the cooking banana in Uganda. Consequently, a multi-disciplinary study was conducted at nine central and six southwestern sites to document shifts in cooking banana production and to elucidate the causes behind these shifts.

Cooking banana production in central Uganda sites fell from 18% of total food crop and 7% of total cash crop production in the 1970s to 4% and 2%, respectively, in the 1990s. Farmers identified reduced labour availability and management, increasing pest pressure and declining soil nutrient status as the major causes of decline. On-farm verification confirmed farmers' observations: weevil levels were the highest yet found in Uganda, while foliar samples indicated deficiencies in magnesium, nitrogen, and potassium. Soil nutrient deficiencies, however, appear to be a direct outcome ofreduced management rather than ‘soil exhaustion’ as postulated by farmers.

In southwestern Uganda, the importance of the cooking banana as a cash crop has quadrupled since 1970. Banana first penetrated the region because of its ease of production and stability of yield. High yields attracted traders and urban market demand drove further crop expansion. With current market incentives, banana management standards have been high. Under current levels of management, it is unlikely that farmers in southwestern Uganda will experience a similar process of decline as that which occurred in the central region. However, concern remains aboqt lack of replenishment of nutrients leaving the farm in the form of fruits sold for market, a nutrient loss which may eventually lead to non-sustainability of the cropping system.     

Influence of slope aspect on soil physico-chemical and biological properties in the mid hills of central Nepal

This study assessed the influence of slope aspect and land use on soil physio-chemical and biological properties (soil quality indicators) on contiguous south- and north-facing slopes of the mid hills in central Nepal, having the same climate, vegetation and parent material. In each aspect, two treatments (agriculture and forest) were chosen and four replicates taken for each treatment. Soil sample collection and microarthropod extraction was done according to the standard methodology: soil core samples (10 × 10 × 5 cm) and extraction with the modified Berlese–Tullgren funnel. The investigated soil variables were temperature, moisture, faunal abundance and diversity, organic matter, organic carbon, bulk density and pH. Except in a few cases, all considered soil properties showed significant differences between aspects and land use. Soils of the north-facing slope had higher SOC content, moisture, faunal abundance and diversity, and lower temperature and pH. Variations due to topographic aspect induced varied microclimates, causing differences in faunal abundance and diversity; soil moisture, temperature and organic matter trends affected soil fertility and ultimately soil quality. Further studies are required to clarify the complex interactions between soil properties (physio-chemical and biological), vegetation and slope aspect in Nepal, as well as to develop soil biological indicators as a tool to assist in sustainable land management.     

Genomic erosion in a demographically recovered bird species during conservation rescue

The pink pigeon (Nesoenas mayeri) is an endemic species of Mauritius that has made a remarkable recovery after a severe population bottleneck in the 1970s to early 1990s. Prior to this bottleneck, an ex situ population was established from which captive-bred individuals were released into free-living subpopulations to increase population size and genetic variation. This conservation rescue led to rapid population recovery to 400–480 individuals, and the species was twice downlisted on the International Union for the Conservation of Nature (IUCN) Red List. We analyzed the impacts of the bottleneck and genetic rescue on neutral genetic variation during and after population recovery (1993–2008) with restriction site-associated sequencing, microsatellite analyses, and quantitative genetic analysis of studbook data of 1112 birds from zoos in Europe and the United States. We used computer simulations to study the predicted changes in genetic variation and population viability from the past into the future. Genetic variation declined rapidly, despite the population rebound, and the effective population size was approximately an order of magnitude smaller than census size. The species carried a high genetic load of circa 15 lethal equivalents for longevity. Our computer simulations predicted continued inbreeding will likely result in increased expression of deleterious mutations (i.e., a high realized load) and severe inbreeding depression. Without continued conservation actions, it is likely that the pink pigeon will go extinct in the wild within 100 years. Conservation rescue of the pink pigeon has been instrumental in the recovery of the free-living population. However, further genetic rescue with captive-bred birds from zoos is required to recover lost variation, reduce expression of harmful deleterious variation, and prevent extinction. The use of genomics and modeling data can inform IUCN assessments of the viability and extinction risk of species, and it helps in assessments of the conservation dependency of populations.     

Sublittoral epifaunal communities at Signy Island,Antarctica. I. The ice-foot zone

Photographs were taken every 0.5 m along three transects of 5.5 m length on shallow rock faces at Signy Island, Antarctica, during the austral summer of 1991/1992. The percentage cover of substratum ranged from 0 to 100% and the colonising communities included representatives of ten phyla. The zone from mean low-water neap level to 1.5 m depth was mostly devoid of organisms as a result of the seasonal formation of the encrusting ice foot. Coralline and macroalgae dominated from 2 to 3 m, and animal groups from 3.5 to 5.5 m. Bryozoans, and to a lesser extent sponges, were the most abundant animal phyla. Within the bryozoans a succession of colonisation of different species was observed, the most abundant two of which occupied >80% of substratum in places. Substratum type seemed to be the main factor influencing community development in the shallow sublittoral at Signy Island, although ice impact prevents community development in the top 1.5 m and limits it over the rest of the transect down to 5.5 m. Depth and profile of substratum also influenced communities within this depth range (particularly taxonomic composition).