Assessing the Geographic Representativeness of Genebank Collections: the Case of Bolivian Wild Potatoes

Abstract: Genebank collection databases can be used for ecogeographical studies under the assumption that the accessions are a geographically unbiased sample. We evaluated the representativeness of a collection of wild potatoes from Bolivia and defined and assessed four types of bias: species, species-area, hotspot, and infrastructure. Species bias is the sampling of some species more often than others. Species-area bias is a sampling that is disproportionate to the total area in which a species is found. Hotspot bias is the disproportionate sampling of areas with high levels of diversity. Infrastructure bias is the disproportionate sampling of areas near roads and towns. Each of these biases is present in the Bolivian wild potato collection. The infrastructure bias was strong: 60% of all wild potato accessions were collected within 2 km of a road, as opposed to 22%, if collections had been made randomly. This analysis can serve as a guide for future collecting trips. It can also provide baseline information for the application of genebank data in studies based on geographic information systems.     

Impact of continental margins in the Mediterranean Sea: Hints from the surface colour and temperature historical record

The surface colour and temperature fields of the Mediterranean Sea, as appearing in time series, of basin-wide images available in the CZCS (1979–1985) and AVHRR (1982–1991) historical archives, differentiate between basin interior and continental margins affected by coastal patterns, river plumes, and mesoscale features. The original data were processed to apply calibration factors, to correct for atmospheric contamination, and to estimate chlorophyll-like pigment concentration and surface temperature. Composites were derived, as monthly and annual means, using a fixed equal-area projection with a 1-km² pixel grid. Enhanced pigment values and lower temperatures along the northern coastal areas (i.e. the Ligurian, Provençal and Balearic basins, as well as the Adriatic, and Aegean Seas) have been associated with the impact of runoff from continental margins (i.e. both a direct impact due to the sediment load and one induced on the planktonic flora by the associated nutrient load) and with vertical mixing due to the prevailing winds (i.e. the Mistral in the northwest, the Bora in the Adriatic, the Etesians in the Aegean). The pattern of increasing pigments and decreasing temperatures in seen to develop in the monthly images from the coastal zone towards the open sea from summer to winter, and then back from winter to summer. The southern coastal areas show different values, namely lower pigments and higher temperatures (except in areas where the data are altered by signal contamination). It is suggested that differences in geomorphology and meteorology of the basin margins have an impact on both water biogeochemistry and dynamics, influencing the biooptical and thermal properties of the various sub-basins, and of the entire Mediterranean region.     

Latitudinal variation in the reproductive biology of the burrowing ghost shrimp Callianassa filholi (Decapoda: Thalassinidea)

Population structure and reproductive ecology of the burrowing ghost shrimp Callianassa filholi Milne-Edwards, 1878 were studied in populations along a latitudinal gradient throughout New Zealand during the breeding season. Size-frequency distributions revealed unimodal populations, with predominantly sexually mature shrimp. All populations showed an unbiased sex-ratio, and there appeared to be no significant difference in size (carapace length, CL) between sexes. At the same time, CL and size at maturity differed significantly between populations; however, a general increase in sizes from north to south was not consistent throughout the latitudinal range studied. The timing of the breeding cycle differed significantly between populations, and breeding started earlier in southern populations. Number of embryos (fecundity) increased linearly with female CL at each location, but rates differed significantly between populations. Embryo size was not related to number of embryos, and the former increased significantly with latitude. With the exception of embryo size, observed differences in body size/size at maturity and reproductive timing between C. filholi populations are thought to be determined by food availability rather than temperature. Thus, further study is suggested on these aspects of thalassinid reproductive biology. Received: 17 June 1999 / Accepted: 8 January 2000     

Patterns of time and space utilisation in coelacanths (Latimeria chalumnae), determined by ultrasonic telemetry

Acoustic telemetry was used to examine patterns of activity and space utilisation of coelacanths, nocturnal predators which spend the day in submarine caves. Nine coelacanths (Latimeria chalumnae) were tracked, each for a period of 1 to 16 nights at Grande Comore, West Indian Ocean. Activities lasted on average 9 h, usually starting shortly after sunset and ending before sunrise. Vertically, coelacanths moved up and down at and below cave level by following the bottom contour, mainly between 180 and 400 m depth. The deepest record was 698 m, the shallowest 133 m. Most time was spent between 200 and 300 m depth. Large individuals performed deep excursions to depths below 400 m, usually once per night. The fish spent most time in water temperatures of 15 to 19 °C; they rarely ventured into waters warmer than 22 °C measured at depths shallower than 160 m depth. Horizontally, coelacanths stayed in narrow areas ranging from <1 to 10 km of coastline. Coelacanths are extremely slow drift-hunters with an estimated average swimming speed of 3.2 m min⁻¹, often travelling not more than 3 km per night. They probably take advantage of local upwelling and downwelling and slow currents occurring parallel to the steep slopes. This study shows that coelacanths are inhabitants of the subphotic zone, where they are active mainly below the depth of their daytime refuges. Received: 7 July 1999 / Accepted: 11 February 2000     

Short retention times of stomach temperature loggers in free-living seabirds: is there hope in the spring?

Stomach temperature loggers have proved useful for the study of feeding activity in free-living seabirds, but their usage has been restricted because they are frequently dislodged and lost during the seabirds' regular regurgitation of indigestible prey remains. In the present study we examine the incidence of spontaneous regurgitation (pellet production) in free-living seabirds, consider the effect this has on the likely retrieval of stomach temperature loggers and present a structural modification of the logger housings which leads to a much lower incidence of regurgitation. Systems were tested on albatrosses, cormorants, gannets and penguins. Received: 15 July 1997 / Accepted: 31 October 1997     

Feeding in myodocopid ostracods: functional morphology and laboratory observations from videos

High-resolution videos, scanning electron microscopy and histology were used to study the feeding mechanism of myodocopid ostracods from the Pacific Coast of Japan, as exemplified by Vargula hilgendorfii (Müller, 1890) and a few other cypridinid species. Ostracods observed in the laboratory were attracted to a wide spectrum of natural food sources, behaving as predators of living prey (e.g. polychaete annelids), as opportunistic scavengers on dead animals (e.g. annelids, fishes, squid), and also consuming artificial food. Food sources may be detected by chemoreception. The fourth limb (endopodites with strong sclerotized setae) and the furcal lamellae (claws with teeth) act in coordination to abrade and eventually tear open the protective integument of living/dead prey such as annelids. The mandibular palps are used mainly to hold the food. Food sections and soft-body contents are transferred to the mouth by the fourth limb (endopodial “rake”) and fifth limb (exopodite with pectinate setae) and are passed to the oesophagus by the endites (mandibles, fourth and fifth limbs). Food is subsequently pumped up to the stomach by peristaltic contractions of the oesophagus (ring muscles) and stored in the stomach pouch. The upper lip of bioluminescent (V. hilgendorfii) and non-bioluminescent species of Cypridinidae often contact food, suggesting that some of the glands housed in this organ may emit digestive enzymes prior to ingestion. Ostracods are able to ingest massive quantities of food within a few minutes and to survive starvation for several weeks. In V. hilgendorfii, the midgut is a huge sac-like organ with no partition and is lined with a single layer of columnar epithelial cells. No differentiated hepatopancreas is present. The cypridinid produces a single faecal pellet wrapped in a thin reticulated, peritrophic membrane. Myodocopid ostracods exhibit a wide range of feeding strategies (detritus-feeding, comb-feeding, scavenging, predation, ectoparasitism) in both benthic and pelagic niches, and constitute a substantial source of food for many zooplankters. Adaptation of cypridinids to scavenging/predation is reflected in the morphology of their furcae, mandibles, fourth and fifth limbs, and their digestive system. Palaeontological data suggest that early Triassic cypridinids and possible late Ordovician myodocopids may have been carnivorous scavengers feeding on carcasses of cephalopods (ammonoids or orthoconic nautiloids), thus playing the same role of “recyclers” as modern representatives of the group. Received: 2 January 1998 / Accepted: 23 July 1998     

A correction to: biological and oceanographic insights from larval labrid (Pisces: Labridae) identification using mtDNA sequences

Previously published mtDNA cytochrome b sequences for Xyrichtys novacula (Linnaeus) and two morphologically distinct types of Xyrichtys larvae (Pisces: Labridae) included human cytochrome b sequence, presumably due to sample contamination and/or poor preservation of sample DNA. Those sequences had been used to identify the two types of Xyrichtys larvae as X. novacula, but owing to the contamination, the identifications are invalid. Fresh specimens were collected: X.␣martinicensis (Cuvier and Valenciennes), X. novacula, X. splendens (Castelnau), and Xyrichtys sp. larvae of each of the two morphotypes (dorsal-forward eye and ventral-forward eye). The cytochrome b fragment was amplified from each specimen using the polymerase chain reaction. Comparison of the sequences with human cytochrome b sequence confirmed that the new sequences were not contaminated. The interspecific differences in Xyrichtys sequences were less than previously reported, but still greater than observed in many fish genera. Distance and parsimony analyses indicated that X. novacula and X. martinicensis were more closely related to each other than to X. splendens. This conclusion differs from our previous conclusion that X. martinicensis and X. splendens were more closely related to each other than to X. novacula. Distance and parsimony analyses also demonstrated that both larval morphotypes were X. novacula and, thus, our previous conclusions regarding larval ecology and oceanographic transport remain unchanged. Received: 12 March 1997 / Accepted: 24 October 1997     

Elemental (C, N and P) analysis of metamorphosing bonefish (Albula sp.) leptocephali: relationship to catabolism of endogenous organic compounds, tissue remodeling, and feeding ecology

Whole-body carbon (C), nitrogen (N) and phosphorus (P) content, and stable-isotope composition (¹³C:¹²C and ¹⁵N:¹⁴N), were followed during metamorphosis of bonefish (Albula sp.) larvae (leptocephali). Metamorphosing larvae depend entirely on endogenous carbon compounds (some of which contain N and P) as an energy source. Two fundamental questions are (1) Do the demands of extensive tissue remodeling during metamorphosis require the efficient retention of N and P during the catabolism of carbon compounds? (2) What effect does the lack of feeding have on stable-isotope composition? Our results showed that both C and N decreased by ～35 to 40%, reflecting the utilization of neutral lipid (triacylglycerols) and N-containing compounds (phosphatidylethanolamine and keratan sulfate glycosaminoglycan) as energy sources, and indicating that larvae have little or no capacity to retain N. Evidence suggested that collagen breakdown, measured as a loss of hydroxyproline content, also contributed to N loss. Stable-isotope ratios, expressed as ¹³C and ¹⁵N, showed no statistically significant differences in early and advanced metamorphosing larvae. In contrast to C and N, phosphorus was conserved during metamorphosis and most probably is utilized in the increased bone mineralization occurring in advanced larvae. We show, however, that advanced larvae are P-limited and that normal ossification is dependent upon a supply of exogenous P obtained after the resumption of feeding. The N:P ratio of 12.3 in early larvae decreased to 8.1 in advanced larvae owing to the conservation of P as N was lost. The mean ¹⁵N value in early metamorphic larvae (11.6‰) is consistent with results from other studies, and provides further support for the view that premetamorphic leptocephali feed at a very low trophic level.