Estimating the complexity of bird song by using capture-recapture approaches from community ecology

Repertoire size, the number of unique song or syllable types in the repertoire, is a widely used measure of song complexity in birds, but it is difficult to calculate this exactly in species with large repertoires. A new method of repertoire size estimation applies species richness estimation procedures from community ecology, but such capture-recapture approaches have not been much tested. Here, we establish standardized sampling schemes and estimation procedures using capture-recapture models for syllable repertoires from 18 bird species, and suggest how these may be used to tackle problems of repertoire estimation. Different models, with different assumptions regarding the heterogeneity of the use of syllable types, performed best for different species with different song organizations. For most species, models assuming heterogeneous probability of occurrence of syllables (so-called detection probability) were selected due to the presence of both rare and frequent syllables. Capture-recapture estimates of syllable repertoire size from our small sample did not differ significantly from previous estimates using larger samples of count data. However, the enumeration of syllables in 15 songs yielded significantly lower estimates than previous reports. Hence, heterogeneity in detection probability of syllables should be addressed when estimating repertoire size. This is neglected using simple enumeration procedures, but is taken into account when repertoire size is estimated by appropriate capture-recapture models adjusted for species-specific song organization characteristics. We suggest that such approaches, in combination with standardized sampling, should be applied in species with potentially large repertoire size. On the other hand, in species with small repertoire size and homogenous syllable usage, enumerations may be satisfactory. Although researchers often use repertoire size as a measure of song complexity, listeners to songs are unlikely to count entire repertoires and they may rely on other cues, such as syllable detection probability.Communicated by A. Cockburn     

Accumulation and release of fuel-oil-derived diaromatic hydrocarbons by the polychaete Neanthes arenaceodentata

Male and gravid female Neanthes arenaceodentata (Moore) (Polychaeta: Annelida) were experimentally exposed to a sublethal concentration of No. 2 fuel oil seawater extract for 24 h. Within 1 h both sexes had incorporated, in equal proportions, most of the diaromatic hydrocarbons (naphthalene, methylnaphthalenes) eventually accumulated. No net loss of accumulated naphthalenes was observed during the exposure period. When returned to hydrocarbon-free seawater, male worms slowly released naphthalenes down to undetectable (< 0.1 ppm) levels in 400 h (17 days). Gravid females retained essentially all of the originally accumulated naphthalenes for 3 weeks, at which time they released their eggs during fertilization, with subsequent dramatic decreases in naphthalenes content. Zygotes and trochophore larvae from exposed females contained 18 ppm naphthalenes, accounting for a majority of those amounts initially present in parent females. As trochophore larvae developed into 18-segment juveniles, naphthalenes concentrations dropped to near undetectable levels (0.4 ppm) in 21-day old juveniles (= 18-segment worms). When sampled at the next stage of development (32-segment worms) 5 days later (1050 h after exposure of gravid females), offspring were free of naphthalenes. Results suggest the importance of lipid-rich eggs in the accumulation and retention of diaromatic hydrocarbons by marine polychaetes.     

Variation in sex steroids and phallus size in juvenile American alligators (Alligator mississippiensis) collected from 3 sites within the Kissimmee-Everglades drainage in Florida (USA)

This 3-year study was designed to examine variation in plasma sex steroids, phallus size, and the standard error (S.E.) associated with these endpoints in juvenile alligators collected from 3 sites within the Kissimmee-Everglades drainage (Florida, USA) with varying concentrations of sediment organochlorine contaminants. We hypothesized that decreased plasma sex steroid concentrations and phallus size would be observed in the higher contaminant site when compared to the intermediate and lower contaminant sites. Furthermore, we hypothesized that greater S.E. associated with these endpoints would be observed for the populations from more contaminated sites. We found that differences existed with females from the higher contaminant site exhibiting lower plasma estradiol-17beta (E2) and testosterone (T) concentrations. Males from the higher contaminant site exhibited smaller phallus sizes than males from the intermediate and lower contaminant sites. Smaller phallus size in this case differed from that reported in Lake Apopka male alligators [Gen. Comp. Endocrinol. 116 (1999) 356] in that a significant positive relationship between body size and phallus size existed. No difference among sites was observed in plasma T for males. Lower S.E. was associated with E2 and T concentrations in females from the higher contaminant site and in phallus size in males from the higher contaminant site. This pattern was opposite to what we had hypothesized. We concluded that variation in plasma E2 and T concentrations, phallus size, and the S.E. associated with these endpoints exists among the 3 sites with the patterns matching the patterns of organochlorine contamination, although S.E. patterns were opposite to what was predicted.     

Thyroid status in juvenile alligators (Alligator mississippiensis) from contaminated and reference sites on Lake Okeechobee,Florida, USA

Exposure to environmental contaminants has been shown to alter normal thyroid function in various wildlife species, including the American alligator (Alligator mississippiensis). Abnormalities in circulating levels of the thyroid hormone thyroxine (T₄) have been reported in juvenile alligators from several contaminated lakes in Florida. To further elucidate these functional thyroid abnormalities, this study examines the structure of thyroids and circulating T₄ concentrations from juvenile alligators collected from three sites of varying contamination on Lake Okeechobee, Florida. The following variables were used to characterize thyroid morphology: epithelial cell height, width and area, percent colloid, and follicle area. These variables were compared among study sites and between genders. No difference was detected in epithelial cell height, epithelial cell area, or follicle area among the sites, whereas significant differences in epithelial cell width (p=0.02) and percent colloid (p=0.008) were found. Animals from the most contaminated site (Belle Glade) had significantly greater epithelial cell widths and significantly less colloid present in their follicles compared to animals from the reference site (West). Gender did not have a significant interaction with site for any variable measured. Thyroxine (T₄) concentrations were elevated in the intermediately contaminated site (Conservation Area 3A) compared to the other sites (p<0.0001). It is proposed that the disruptions seen in Lake Okeechobee alligators are due to disruptions at both the thyroid and extra-thyroidal tissues.     

Soil and tree-ring chemistry response to liming in a sugar maple stand

An evaluation of the impact of dolomitic lime [CaMg(CO3)2] on soils (five years after treatment) and sapwood chemistry (after four growing seasons) was realized for a Ca-deficient sugar maple stand at the lake Clair watershed. The effect on humus chemistry was significant: exchangeable Mg and Ca, effective acidity (EA), base saturation (BSe), pH, and effective cation exchange capacity (CECe) significantly increased, while exchangeable Fe significantly decreased. In the B horizon, liming increased exchangeable Ca, Mg, and Mn concentrations while decreasing other acid cations. No significant temporal trends in element concentrations in tree rings could be detected, although the lime treatment significantly changed the average xylem Mg and Mn concentrations as well as the average Mg/Mn and Ca/Mn ratios of the sapwood. The absence of temporal trends in rings from the last 20 yr implied a significant re-equilibration of elements through the sapwood. Significant relationships were found between averaged xylem Ca/Mn and Mg/Mn ratios and exchangeable humus Ca, Mg, Mn, Al, Fe, and H+ concentration, EA, CECe, and BSe, suggesting that the average xylem Ca/Mn and Mg/Mn ratios are strong indicators of the soil acid-base status.     

Radon-222 signatures of natural ventilation regimes in an underground quarry

Radon-222 activity concentration has been monitored since 1999 in an underground limestone quarry located in Vincennes, near Paris, France. It is homogeneous in summer, with an average value of 1700 Bq m(-3), and varies from 730 to 1450 Bq m(-3) in winter, indicating natural ventilation with a rate ranging from 0.5 to 2.4 x 10(-6) s(-1) (0.04-0.22 day(-1)). This hypothesis is supported by measurements in the vertical access pit where, in winter, a turbulent air current produces a stable radon profile, smoothly decreasing from 700 Bq m(-3) at 20 m depth to 300 Bq m(-3) at surface. In summer, a thermal stratification is maintained in the pit, but the radon-222 concentration jumps repeatedly between 100 and 2000 Bq m(-3). These jumps are due to atmospheric pressure pumping, which induces ventilation in the quarry at a rate of about 0.1 x 10(-6) s(-1) (0.009 day(-1)). Radon-222 monitoring thus provides a dynamical characterisation of ventilation regimes, which is important for the assessment of the long-term evolution of underground systems.     

Entry points for climate-informed planning for the water resources and agriculture sectors in Cambodia

Incorporating climate change concerns into national development planning allows adaptation to happen in harmony with the sustainable development of a country. Cambodia has received international support to enable climate change-resilient development; “mainstreaming climate change” is one of the key recent strategies. This article aims to identify entry points for integrating climate change concerns into national development planning, especially for the water resources and agriculture sectors. The study uses institutional ethnography research methods with informants drawn from government organisations, local academic institutions, and development partners, together with content analysis of key policy documents. It was found that the Cambodian national planning process restricts the involvement of other actors such as researchers, civil society, and private sector; yet flexible, in that it provides opportunities for the inclusion of climate change and other related concerns. The study identified specific entry points in key policy documents, such as the National Strategic Development Plans, and ministries’ plans. Other entry points were identified in the development planning process, for example, in the process of development departments and ministries’ plans, and actors such as department planners, and departments of planning of line ministries. Climate-informed planning is now plausible; more significant integration of concerns with future climate change, however, will require more commitment and stronger connections among national planning stakeholders, adaptation actors, and research communities.     

Anticipatory capacity in response to global change across an extreme elevation gradient in the Ica Basin,Peru

Regional Environmental Change - Mountainous areas with extreme elevation gradients and corresponding ranges of biophysical and socioeconomic conditions are highly vulnerable to global change. We...