Cadmium stress alters gene expression of DNA mismatch repair related genes in Arabidopsis seedlings

Cadmium (Cd) is a non essential element, and is a widespread environmental pollutant. Exposure to Cd can result in a variety of adverse health effects in plant and humans. In the current study, Arabidopsis seedlings were used as a bio-indicator of Cd pollution. Seedlings were grown on MS media containing 0-6.0 mg L(-1) Cd for 18 days, and the gene expression patterns were used to link increased Cd exposure with progressive biological effects. Reduction of total soluble protein content in shoots of the Arabidopsis seedlings occurred with increase in Cd concentrations. For the gene expression patterns, seven genes known to be involved in cell division and DNA mismatch repair (MMR) system were investigated by semi-quantitative RT-PCR, and normalized using 18S rRNA gene expression. Expression of the proliferating cell nuclear antigen 2 (atPCNA 2), MutS 3 homolog (atMSH 3) and MutL1 homolog (atMLH1) genes in shoots of Arabidopsis was strongly induced by exposure to 0.75 mg L(-1) Cd, but were repressed by other Cd concentrations whereas exposure to 0.75-6 mg L(-1) of Cd resulted in a decreased expression of atPCNA1, atMSH 2, 6 and 7 genes independently of any observable biological effects, including survival, fresh weight and chlorophyll level of shoots. This work demonstrated that specific gene expression changes could serve as useful molecular biomarkers indicative of Cd exposure and related biological effects.     

Ozonation of pentachlorophenol in unsaturated soils

A heterogeneous model was developed to describe interactions between ozone and hydrophobic organic compounds, exemplified by pentachlorophenol, in highly gas-saturated vadose zones where water moisture was limited to a thin film on soil particle surfaces. The soil was assumed to be free of soil organic matter. The model included a set of transient equations considering diffusion with simultaneous chemical reaction and hydrophobic partitioning. From dimensionless analysis, it was found that the film concentrations of ozone and the hydrophobic organic component were dependent on the Damk?hler numbers. Effects of Damk?hler numbers on the film profiles of components were examined. With the interfacial flux of ozone calculated from film profiles, dimensionless governing equations of ozone transport and contaminant removal across an experimental column were established. These equations were dependent on the Stanton number. One-dimensional column experiments were conducted to test the model. The optimal time for flow rate adjustment during the process was approximated. Finally, effects of ozone velocity and ozone gas concentration on the Stanton number were evaluated.     

Dioxins in adipose tissue of women in Southern Spain

Seventeen polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) were quantified in adipose tissue samples of non-occupationally exposed women living in Southern Spain. Geometric mean levels of sum of congeners and WHO(PCDD/F)-TEQ(2005) were 410 and 17.9pgg(-1) fat, respectively. Among PCDDs, octachlorodibenzo-p-dioxin (OCDD) showed the highest concentration with a mean value of 265pgg(-1) fat, followed by 1,2,3,6,7,8-HxCDD (49.3pgg(-1) fat) and 1,2,3,4,6,7,8-HpCDD (45.2pgg(-1) fat). These three congeners were responsible for around 90% of the sum of all PCDD/F congeners in adipose tissue. The geometric mean 2,3,7,8-TCDD value was 1.87pgg(-1) fat. 2,3,4,7,8-PeCDF (8.43pgg(-1) fat) showed the highest concentration among the PCDFs, followed by 1,2,3,4,7,8-HxCDF (4.17pgg(-1) fat) and 1,2,3,6,7,8-HxCDF (3.28pgg(-1) fat), and these three congeners were responsible for 4% of the sum of all studied PCDD/F congeners in adipose tissue and 76% of the sum of ten PCDFs. 1,2,3,7,8,9-HxCDF was the only congener not quantified in any sample, while 1,2,3,4,7,8,9-HpCDF, 1,2,3,7,8-PeCDF, OCDF and 2,3,7,8-TCDF were found in 5, 16, 16 and 19 samples, respectively. All other congeners were quantifiable in all 20 samples. Congeners contributing most to the WHO(PCDD/F)-TEQ(2005) were 1,2,3,7,8-PeCDD (31.6%), 1,2,3,6,7,8-HxCDD (28.3%) and 2,3,4,7,8-PeCDF (14.6%). The body burden of log-transformed WHO(PCDD/F)-TEQ(2005) levels increased with age (B=0.02; 95% CI=0.01, 0.03; p=0.02). Although these adipose tissue PCDD/F levels are similar to previously published findings in Spain and other European countries, further research is needed to determine trends in the exposure of women to these chemical residues.     

The impact of motorcycle traffic on soil and vegetation of stabilized coastal dunes, Israel

This study aimed to assess the response of soil and annual plant vegetation of stabilized coastal dunes in Israel, to varying intensities of off-road motorcycle (ORM) traffic, and to assess their resistance and resilience to such a disturbance. A standard experimental procedure that included 0, 20, 50, 100 and 200 ORM straight passes and 150 ORM turn passes was used. Plant ground cover, mean plant height, species richness, species diversity, soil penetrable depth, organic matter and moisture contents were measured on several dates within a period of 372 days after the experiment. Results have shown that: (1) ORM passes had a significant immediate impact on annual plants that increased with traffic intensity. The impact on the soil was detected only as an increase of penetrable depth. (2) The maximum impact on annual plants was observed in the wheel ruts and turn areas. The impact on the area between the wheel ruts and on the margins outside the wheel ruts was indirect and smaller. (3) Annual plant ground cover and mean plant height were less sensitive parameters than species richness and species diversity for determining the impact of ORM traffic on the area. (4) One year after the experiment, soil and annual plant vegetation in all passes were very similar to their pre-experimental condition. This indicates high resilience and recovery potential of the Mediterranean stabilized coastal dune ecosystem to ORM disturbance.     

Identifying the largest individual sample value from a two-way composite sampling design

Composite sampling techniques for identifying the largest individual sample value seem to be cost effective when the composite samples are internally homogeneous. However, since it is not always possible to form homogeneous composite samples, these methods can lead to higher costs than expected. In this paper we propose a two-way composite sampling design as a way to improve on the cost effectiveness of the methods available to identify the largest individual sample value.     

Unprecedented bleaching-induced mortality in Porites spp. at Rangiroa Atoll, French Polynesia

In April-May 1998, mass coral bleaching was observed in the lagoon of Rangiroa Atoll, Tuamotu Archipelago, French Polynesia. Six months later, the extent of bleaching-induced coral mortality was assessed at three sites. Corals in the fast-growing genus Pocillopora had experienced >99% mortality. Many large colonies of the slow-growing genus Porites (mean horizontal cross-sectional area 5.8 m²) had also died - a phenomenon not previously observed in French Polynesia and virtually unprecedented world-wide. At one site, 25% of colonies, or 44% of the pre-bleaching cover of living Porites, experienced whole-colony mortality. At the two other sites, recently dead Porites accounted for 41% and 82% of the pre-bleaching live cover. Mortality in Porites was negatively correlated with depth between 1.5 and 5 m. Using a 50-year dataset of mean monthly sea surface temperature (SST), derived from ship- and satellite-borne instruments, we show that bleaching occurred during a period of exceptionally high summer SST. 1998 was the first year in which mean monthly SSTs exceeded the 1961-1990 upper 95% confidence limit (29.4°C) for a period of three consecutive months. We suggest that the sustained 3-month anomaly in local summer SST was a major cause of coral mortality, but do not discount the synergistic effect of solar radiation. Recovery of the size-frequency distribution of Porites colonies to pre-bleaching levels may take at least 100 years.     

Elevated levels of nitrogen and phosphorus reduce fertilisation success of gametes from scleractinian reef corals

Spawned gametes were collected from colonies of Acropora longicyathus at One Tree Island and Goniastrea aspera at Magnetic Island, Great Barrier Reef, Australia, for use in fertilisation trials. Mean fertilisation rates were significantly reduced compared with controls (P<0.003), when gametes from the branching coral A. longicyathus were exposed to elevated ammonium concentrations at 1 µM and above in one cross (60-64% reduction), and at 100 µM in another cross (16% reduction). Mean fertilisation success of A. longicyathus gametes was also significantly reduced compared with controls in both crosses (P=0.000) at concentrations of 1 µM phosphate and above (35-75% reduction), and at 1 µM ammonium plus 1 µM phosphate and all higher concentrations (68-74% reduction). Similarly, the mean percentage of regular embryos that were developing normally was significantly reduced in most nutrient treatments compared with controls (P=0.000). Fertilisation trials using gametes from the brain coral G. aspera resulted in a significantly lower percentage of regular embryos (P=0.001) and a significantly higher percentage of deformed embryos (P=0.001) developing after exposure to elevated nutrient treatments compared with controls. Mean fertilisation rates for this species were only significantly reduced (P=0.034) in the 50 µM ammonium plus phosphate treatment in one cross (8% reduction), compared with the control. Therefore, ammonium and phosphate enrichment significantly impairs fertilisation success and embryo development in scleractinian reef corals.     

Chromosomal and nuclear characteristics of deep-sea hydrothermal-vent organisms: correlates of increased growth rate

A range of tissue and cell types from adult and juvenile stages of vent- and non-vent-dwelling deep-sea and shallow-water organisms were compared for signs of cell division, in preparation for a cytogenetic study of the different groups. Virtually all the Mid-Atlantic Ridge (MAR) vent species (bresiliid shrimp, bathymodiolid mussel, branchipolynoid polychaete, and a range of small gastropods) showed an abundance of metaphase chromosome spreads, indicating a generally high intrinsic rate of cell division, irrespective of their phylogenetic group. In comparison, similar tissues and life-history stages (i.e. gonad, developing eggs and gill) from two deep-sea bathypelagic crustaceans, Hymenodora and Gnathophausia, failed to yield any convincing evidence of cell division. This indicated that rates of growth and reproduction in the rest of the deep sea are extremely low. While much has been written about the contrasting growth rates of vent versus non-vent organisms, this is the first direct evidence of differences in cell-division rate between vent and non-vent species, which undoubtedly reflects contrasting conditions relating to food availability and temporal stability in these two deep-sea environments. The cells of shallow-water marine invertebrates (Mytilus, Nucella, Littorina, Pomatoceros and Crangon), based on the results of previous cytogenetic investigations, occupy an intermediate position with respect to their cell-division kinetics. When chromosome numbers, DNA content and nuclear diameters were compared between vent and non-vent species, this showed that no change had occurred in these characters since the time of vent colonisation. Representative chromosome spreads from hydrothermal-vent organisms are shown here for the first time.