Power matters in closing the phenotyping gap

Much of our understanding of physiology and metabolism is derived from investigating mouse mutants and transgenic mice, and open-access platforms for standardized mouse phenotyping such as the German Mouse Clinic (GMC) are currently viewed as one powerful tool for identifying novel gene-function relationships. Phenotyping or phenotypic screening involves the comparison of wild-type control mice with their mutant or transgenic littermates. In our study, we explored the extent to which standardized phenotyping will succeed in detecting biologically relevant phenotypic differences in mice generated and provided by different collaborators. We analyzed quantitative metabolic data (body mass, energy intake, and energy metabolized) collected at the GMC under the current workflow, and used them for statistical power considerations. Our results demonstrate that there is substantial variability in these parameters among lines of wild-type C57BL/6 (B6) mice from different sources. Given this variable background noise in mice that serve as controls, subtle phenotypes in mutant or transgenic littermates may be overlooked. Furthermore, a phenotype observed in one cohort of a mutant line may not be reproducible (to the same extent) in mice coming from a different environment or supplier. In the light of these constraints, we encourage researchers to incorporate information on intrastrain variability into future study planning, or to perform advanced hierarchical analyses. Both will ultimately improve the detectability of novel phenotypes by phenotypic screening. Carola W. Meyer and Ralf Elvert contributed equally to this work.     

Assessing strategies to mitigate phosphorus leaching from drained clay soils

Assessing mitigation of phosphorus (P) leaching from subsurface drainage systems is challenging due to high spatial and temporal variation in leaching. Mean measured total P leaching from a clayey soil in an eight-year study period (four replicates per treatment) was (kg ha^?1 year^?1): 1.21 from shallow autumn tillage (ShT), 0.84 from unfertilised fallow (UF), 0.81 from conventional autumn ploughing (CT) and 0.57 from structure liming (SL–CT). Treatment was not significant using Richards–Baker flow index or a distance factor as covariate (p = 0.084 and 0.057). A tendency for lower leaching was obtained comparing SL-CT with ShT (p _adjusted = 0.060 and 0.009 respectively). A combination of measures adapted to drainage conditions and clay content in different parts of the field is proposed since P leaching was approximately halved from an adjacent field (4.3 ha) in a three-year post-period compared with a three-year pre-period for structure liming the entire field and drainage system renovation plus structure lime drain backfilling.     

Aqueous leaching of cattle manure incineration ash to produce a phosphate enriched fertilizer

Ash produced from the combustion of livestock manure contains large amounts of phosphorus (P), which is an important resource as a fertilizer. Some studies have extracted and recovered P from incinerated biomass ash using inorganic acid or alkaline agents, which produce wastewater that requires treatment and is expensive due to the cost of chemicals. Livestock manure ash contains not only P, but also water soluble salts, which could be a negative influence on plant growth and shall be preferably removed from the recovered fertilizer. In this study, we removed salinity from cattle manure incineration ash by simple aqueous leaching, while retaining the P content. The optimal condition was a 20 min leaching time at a liquid/solid (L/S) ratio of 10 mL g-ash^?1. Under this condition, over 90 % of Cl and 20 % of Na in the original ash was removed, while over 99 % of the P was retained in the leached residue. The leached residue met the fertilizer standard in Japan in terms of citrate soluble fertilizer components and contained few heavy metals. X-ray analyses of the ash indicated that Cl was mainly present as KCl in the original ash, while P was mainly present as Ca compounds in the ash.     

Improvement of Impact Toughness of Biodegradable Poly(butylene succinate) by Melt Blending with Sustainable Biobased Glycerol Elastomers

Poly(butylene succinate) (PBS) was melt blended with glycerol based polyesters (PGS) synthesized from pure and technical glycerol aiming to improve the impact strength of PBS. It was found that after addition of 30 wt% PGS to PBS its impact strength was significantly increased by 344% (from 31.9 to 110 J/m) and its elongation at break was maintained at 220%. Infrared spectra of the blends showed the presence of hydroxyl groups from the PGS phase suggesting that hydrogen bonding between the phases could be responsible for a good stress transfer and an efficient toughening in the PBS/PGS blends. Scanning electron microscopy imaging showed a good dispersion of PGS phase into PBS with a PGS particle size of 10 μm and less and no agglomeration. Addition of PGS to PBS was shown to be an effective strategy for improvement of PBS impact resistance without serious detrimental effects on its thermal and rheological properties.     

Insights into the mercury(II) adsorption and binding mechanism onto several typical soils in China

To better understand the Hg(II) adsorption by some typical soils and explore the insights about the binding between Hg(II) and soils, a batch of adsorption and characteristic experiments was conducted. Results showed that Hg(II) adsorption was well fitted by the Langmuir and Freundlich. The maximum adsorption amount of cinnamon soil (2094.73 mg kg^?1) was nearly tenfold as much as that of saline soil (229.49 mg kg^?1). The specific adsorption of Hg(II) on four soil surface was confirmed by X-ray photoelectron spectroscopy (XPS) owing to the change of elemental bonding energy after adsorption. However, the specific adsorption is mainly derived from some substances in the soil. Fourier transform infrared spectroscopy (FTIR) demonstrated that multiple oxygen-containing functional groups (O–H, C=O, and C–O) were involved in the Hg(II) adsorption, and the content of oxygen functional groups determined the adsorption capacity of the soil. Meanwhile, scanning electron microscopy combined with X-ray energy dispersive spectrometer (SEM–EDS) more intuitive revealed the binding of mercury to organic matter, metal oxides, and clay minerals in the soil and fundamentally confirmed the results of XPS and FTIR to further elucidate adsorptive phenomena. The complexation with oxygen-containing functional groups and the precipitation with minerals were likely the primary mechanisms for Hg(II) adsorption on several typical soils. This study is critical in understanding the transportation of Hg(II) in different soils and discovering potential preventative measures.     

Change in zooxanthellae and mucocyte tissue density as an adaptive response to environmental stress by the coral, <Emphasis Type="Italic">Montastraea annularis</Emphasis>

Results from controlled in situ experimentation conducted on the leeward reef tract of Curaçao, Netherlands Antilles, indicate that the coral Montastraea annularis exhibits a complex, yet consistent, cellular response to increasing sea surface temperature (SST) and decreasing irradiance. This was determined by simultaneously quantifying and tracking the tissue density of zooxanthellae and mucocytes using a novel technique that integrates the lectin histochemical stain wheat germ agglutinin (WGA) with high-resolution (200 nm) optical epifluorescence microscopy. Coral colonies growing at 6-m water depth (WD) and an irradiance of 100.2 ± 6.5 μmol m^?2 s^?1 were treated with a shading experiment for 11 days that reduced irradiance to 34.9 ± 6.6, 72.0 ± 7.0 and 90.1 ± 4.2 μmol m^?2 s^?1, respectively. While a significant decrease in the density of both zooxanthellae and mucocytes were observed at all shade levels, the largest reduction occurred between the natural non-shaded control (44,298 ± 3,242 zooxanthellae cm^?2; 4,853 ± 346 mucocytes cm^?2) and the highest shading level (13,982 ± 1,961 zooxanthallae cm^?2; 2,544 ± 372.9 mucocytes cm^?2). Colonies were also sampled during a seasonal increase in SST of 1.5°C, where the density of zooxanthellae was significantly lower (from 54,710 ± 1,755 to 34,322 ± 2,894 cells cm^?2) and the density of mucocytes was significantly higher (from 6,100 ± 304 to 29,658 ± 3,937 cells cm^?2). These observations of coral cellular response to environmental change provide evidence to support new hypotheses for coral survival and the complex role played by mucus in feeding, microbial associations and resilience to increasing SST.     

Removal of malachite green from water samples by cloud point extraction using Triton X-100 as non-ionic surfactant

A surfactant mediated cloud point extraction (CPE) procedure has been developed to remove color from wastewater containing malachite green using Triton X-100 as non-ionic surfactant. The effects of the concentration of the surfactant, temperature and salt concentration on the different concentrations of dye have been studied and optimum conditions were obtained for the removal of malachite green. The concentration of malachite green in the dilute phase was measured using UV–Vis spectrophotometer. It was found that the separation of phases was complete and the recovery of malachite green was very effective in the presence of NaCl as an electrolyte. The results showed that up to 500 ppm of malachite green can quantitatively be removed (>95%) by CPE procedure in a single extraction using optimum conditions.     

Characteristics of aerosol types during large-scale transport of air pollution over the Yellow Sea region and at Cheongwon,Korea, in 2008

Episodes of large-scale transport of airborne dust and anthropogenic pollutant particles from different sources in the East Asian continent in 2008 were identified by National Oceanic and Atmospheric Administration satellite RGB (red, green, and blue)-composite images and the mass concentrations of ground level particulate matter. These particles were divided into dust, sea salt, smoke plume, and sulfate by an aerosol classification algorithm. To analyze the aerosol size distribution during large-scale transport of atmospheric aerosols, aerosol optical depth (AOD) and fine aerosol weighting (FW) of moderate imaging spectroradiometer aerosol products were used over the East Asian region. Six episodes of massive airborne dust particles, originating from sandstorms in northern China, Mongolia, and the Loess Plateau of China, were observed at Cheongwon. Classified dust aerosol types were distributed on a large-scale over the Yellow Sea region. The average PM10 and PM2.5 ratio to the total mass concentration TSP were 70% and 15%, respectively. However, the mass concentration of PM2.5 among TSP increased to as high as 23% in an episode where dust traveled in by way of an industrial area in eastern China. In the other five episodes of anthropogenic pollutant particles that flowed into the Korean Peninsula from eastern China, the anthropogenic pollutant particles were largely detected in the form of smoke over the Yellow Sea region. The average PM10 and PM2.5 ratios to TSP were 82% and 65%, respectively. The ratio of PM2.5 mass concentrations among TSP varied significantly depending on the origin and pathway of the airborne dust particles. The average AOD for the large-scale transport of anthropogenic pollutant particles in the East Asian region was measured to be 0.42 ± 0.17, which is higher in terms of the rate against atmospheric aerosols as compared with the AOD (0.36 ± 0.13) for airborne dust particles with sandstorms. In particular, the region ranging from eastern China, the Yellow Sea, and the Korean Peninsula to the Korea East Sea was characterized by high AOD distributions. In the episode of anthropogenic polluted aerosols, FW averaged 0.63 ± 0.16, a value higher than that in the episode of airborne dust particles (0.52 ± 0.13) with sandstorms, showing that fine anthropogenic pollutant particles contribute greatly to atmospheric aerosols in East Asia.     

Vulnerability of agro-ecological zones in India under the earth system climate model scenarios

India being a developing economy dependent on climate-sensitive sector like agriculture is highly vulnerable to impacts of global climate change. Vulnerability to climate change, however, differs spatially within the country owing to regional differences in exposure, sensitivity, and adaptive capacity. The study uses the Hadley Centre Global Environment Model version 2-Earth System (HadGEM-ES) climate projections to assess the dynamics in vulnerability across four climate change exposure scenarios developed using Representative Concentration Pathways (RCPs). The analysis was carried out at subnational (district) level; the results were interpreted and reported for their corresponding agro-ecological zones. Vulnerability of each district was quantified using indicators capturing climatic variability, ecological and demographic sensitivity, and socio-economic capacity. Our analysis further assigns probabilities to vulnerability classes of all the 579 districts falling under different agro-ecological zones. The results of the vulnerability profile show that Western plains, Northern plains, and central highlands of the arid and semi-arid agro-ecological zones are the most vulnerable regions in the current scenario (1950–2000). In the future scenario (2050), it extends along districts falling within Deccan plateau and Central (Malwa) highlands, lying in the arid and semi-arid zones, along with regions vulnerable in the current scenario, recording the highest vulnerability score across all exposure scenarios. These regions exhibit highest degree of variation in climatic parameters, ecological fragility, socio-economic marginality, and limited accessibility to resources, generating conditions of high vulnerability. The study emphasizes on the priority to take up adaptive management actions in the identified vulnerable districts to not only reduce risks of climate change, but also enhance their inherent capacity to withstand any future changes in climate. It provides a systematic approach to explicitly identify vulnerable regions, where regional planners and policy makers can build on existing adaptation decision-making by utilizing an interdisciplinary approach in the context of global change scenario.     

Impacts of climate variability and changes on domestic water use in the Yellow River Basin of China

We present a methodology for using a domestic water use time series that were obtained from Yellow River Conservancy Commission, together with the climatic records from the National Climate Center of China to evaluate the effects of climate variability on water use in the Yellow River Basin. A suit of seven Global Circulation Models (GCMs) were adopted to anticipate future climate patterns in the Yellow River. The historical records showed evidences of rises in temperature and subsequent rises in domestic water demand in the basin. For Upstream of Longyangxia region, the impact was the least, with only 0.0021?×?10⁸ m³ for a temperature increase of 1 °C; while for Longyangxia-Lanzhou region, domestic water use was found to increase to 0.18?×?10⁸ m³ when temperature increases 1 °C. Downstream of Huayuankou was the region with the most changes in temperature that gave the highest increase of 1.95?×?10⁸ m³ in domestic water demand for 1 °C of change of temperature. Downstream of Huayuankou was identified as the most vulnerable area, where domestic water demand increases nearly by 42.2 % with 1 °C increase of temperature. Judging from the trends of temperature range, we concluded that future temperature in Yellow River Basin has an increasing tendency. This could worsen the existing issues of domestic water demand and even more to trigger high competition among different water-using sectors.