Effects of management and climate on elk brucellosis in the Greater Yellowstone Ecosystem.

Every winter, government agencies feed approximately 6000 metric tons (6 x 10(6) kg) of hay to elk in the southern Greater Yellowstone Ecosystem (GYE) to limit transmission of Brucella abortus, the causative agent of brucellosis, from elk to cattle. Supplemental feeding, however, is likely to increase the transmission of brucellosis in elk, and may be affected by climatic factors, such as snowpack. We assessed these possibilities using snowpack and feeding data from 1952 to 2006 and disease testing data from 1993 to 2006. Brucellosis seroprevalence was strongly correlated with the timing of the feeding season. Longer feeding seasons were associated with higher seroprevalence, but elk population size and density had only minor effects. In other words, the duration of host aggregation and whether it coincided with peak transmission periods was more important than just the host population size. Accurate modeling of disease transmission depends upon incorporating information on how host contact rates fluctuate over time relative to peak transmission periods. We also found that supplemental feeding seasons lasted longer during years with deeper snowpack. Therefore, milder winters and/or management strategies that reduce the length of the feeding season may reduce the seroprevalence of brucellosis in the elk populations of the southern GYE.     

Responses of pond-breeding amphibians to wildfire: short-term patterns in occupancy and colonization.

Wildland fires are expected to become more frequent and severe in many ecosystems, potentially posing a threat to many sensitive species. We evaluated the effects of a large, stand-replacement wildfire on three species of pond-breeding amphibians by estimating changes in occupancy of breeding sites during the three years before and after the fire burned 42 of 83 previously surveyed wetlands. Annual occupancy and colonization for each species was estimated using recently developed models that incorporate detection probabilities to provide unbiased parameter estimates. We did not find negative effects of the fire on the occupancy or colonization rates of the long-toed salamander (Ambystoma macrodactylum). Instead, its occupancy was higher across the study area after the fire, possibly in response to a large snowpack that may have facilitated colonization of unoccupied wetlands. Naive data (uncorrected for detection probability) for the Columbia spotted frog (Rana luteiventris) initially led to the conclusion of increased occupancy and colonization in wetlands that burned. After accounting for temporal and spatial variation in detection probabilities, however, it was evident that these parameters were relatively stable in both areas before and after the fire. We found a similar discrepancy between naive and estimated occupancy of A. macrodactylum that resulted from different detection probabilities in burned and control wetlands. The boreal toad (Bufo boreas) was not found breeding in the area prior to the fire but colonized several wetlands the year after they burned. Occupancy by B. boreas then declined during years 2 and 3 following the fire. Our study suggests that the amphibian populations we studied are resistant to wildfire and that B. boreas may experience short-term benefits from wildfire. Our data also illustrate how naive presence-non-detection data can provide misleading results.     

Estimating dyad association probability under imperfect and heterogeneous detection

In animal behaviour studies, association indices estimate the proportion of time two individuals (i.e. a dyad) spend in association. In terms of dyads, all association indices can be interpreted as estimators of the probability that a dyad is associated. However, traditional indices rely on the assumptions that the probability to detect a particular individual (p) is either approximately one and/or homogeneous between associated and not associated individuals. Based on marked individuals we develop a likelihood based model to estimate the probability a dyad is associated (ψ) accounting for p < 1 and possibly varying between associated and not associated individuals. The proposed likelihood based model allows for both individual and dyadic missing observations. In addition, the model can easily be extended to incorporate covariate information for modeling p and ψ. A simulation study showed that the likelihood based model approach yield reasonably unbiased estimates, even for low and heterogeneous individual detection probabilities, while, in contrast, traditional indices showed moderate to strong biases. The application of the proposed approach is illustrated using a real data set collected from a population of Commerson's dolphin (Cephalorhynchus commersonii) in Patagonia Argentina. Finally, we discuss possible extensions of the proposed model and its applicability in animal behaviour and ecological studies.     

Suitability of short or long conservation contracts under ecological and socio-economic uncertainty

Acquisition of land rights has become a primary tool used to protect terrestrial biodiversity. Fixed length contracts are often used when trying to secure conservation benefits on private land in agri-environment schemes and payment for environmental services schemes, but the duration of the conservation contracts used in different programmes varies. To date, very little research has been undertaken to determine the situations in which contracts of differing lengths are optimal or when conservation agencies or groups should use a portfolio of different contract lengths rather than relying on a single type. Using stochastic dynamic programming and related heuristic methods, we investigate how the choice between short or long conservation contracts is affected by uncertainty regarding the future availability of sites and their ecological condition. We also examine the benefits offered by using a portfolio of different contract lengths. Conservation agencies must pay private landowners a premium to secure longer agreements and because of this, shorter contracts are advantageous if sites are likely to remain available for conservation in the future. Long contracts are preferred when future site availability becomes more unlikely. In contrast to uncertainty over site availability, uncertainty over future ecological conditions has little effect on contract selection and only markedly influences the choice between short and long contracts when there is heterogeneity across sites in expected conservation outcomes and future availability of sites is also uncertain. Finally, when future site availability is unlikely, the use of a portfolio of short and long contracts would offer greater conservation gains than using either type in isolation, even though this option is not yet one that is commonly found in conservation practice.     

Effect of starvation on the energy budget of two Asian horseshoe crab species: <Emphasis Type="Italic">Tachypleus tridentatus</Emphasis> and <Emphasis Type="Italic">Carcinoscorpius rotundicauda</Emphasis> (Chelicerata: Xiphosura)

Energy budget is one of the most studied parameters in aquatic animals under environmental challenge. To examine how prolonged starvation would affect their energy budget, respiration rate (RR), ammonia excretion rate (ER), oxygen consumption to ammonia–nitrogen excretion (O:N) ratio and scope for growth (SfG) representing the balance between energy intake and metabolic output, two Asian horseshoe crab species, Tachypleus tridentatus and Carcinoscorpius rotundicauda, were investigated in two feeding regimes (fed and starved) over a period of 7 weeks. No significant effects of species and time course, as well as their interaction, on absorption efficiency were observed in the fed treatments. For both species, RR and ER of the starved treatments significantly decreased, while their O:N ratio significantly increased during the experiment. However, such values for the fed treatments remained relatively stable over the study period. A rapid reduction in SfG was only apparent in the first week of the starved treatments for both species; thereafter, their SfG remained relatively constant. In the fed treatments, SfG of T. tridentatus was significantly lower than that of C. rotundicauda throughout the experiment. In general, C. rotundicauda showed a greater decrease in SfG under starvation than T. tridentatus, suggesting that they may have a more competitive life-history strategy for adjusting to poor nutritional conditions.     

Limited population structure in Northern and Spotted Wolffishes (<Emphasis Type="Italic">Anarhichas denticulatus</Emphasis> and <Emphasis Type="Italic">A. minor</Emphasis>) despite low apparent dispersal potential

Northern and Spotted Wolffishes (Anarhichas denticulatus and A. minor) are demersal marine fishes listed as “threatened” in Canadian waters. Both species have unusually large benthic eggs and large size at hatch, which should reduce passive dispersal. We examined population differentiation with microsatellite and AFLP loci across the ranges of both species in the North Atlantic Ocean. Although significant population structure was documented, differentiation was less than expected based on knowledge of life history characteristics. Significant differentiation was found in Northern Wolffish between the Barents Sea and other samples based on both microsatellite and AFLP data. In contrast, population structure in the Spotted Wolffish was notably weaker, particularly with microsatellites. Both species were characterized by low genetic diversity for marine fishes and had significantly lower genetic diversity than the congeneric Atlantic Wolffish. This finding was consistent with the conservation status of these three species and suggests potential vulnerability to over-exploitation in Northern and Spotted Wolffishes.     

Movements and wintering areas of breeding age Thick-billed Murre <Emphasis Type="Italic">Uria lomvia</Emphasis> from two colonies in Nunavut,Canada

The non-breeding movements of marine birds were poorly known until recently, but this information is essential to understanding the risk to different geographical populations from events on the wintering grounds. We tracked the migration routes and wintering areas of Thick-billed Murre Uria lomvia from two breeding colonies in eastern Canada: Coats Island in northern Hudson Bay and The Minarets, Baffin Island, during the period August 2007–May 2008 using geolocation loggers. Birds from The Minarets moved south rapidly post-breeding and wintered principally off Newfoundland and southern Labrador, or between Newfoundland and southern Greenland, remaining south of 55°N until at least the spring equinox. Those from Coats Island remained in Hudson Bay until at least mid-November, after which they moved rapidly through Hudson Strait to winter in southern Davis Strait and the northern Labrador Sea, mostly north of 55°N. Many individuals stayed throughout the winter in areas of heavy ice cover. Adults from the two colonies appear to be completely segregated in winter and those from Coats Island probably did not enter the area of the winter hunt in Newfoundland. Unexpectedly, some birds from The Minarets wintered in waters beyond the continental slope and outside the distribution of pack ice, demonstrating that particular individuals can be wholly pelagic throughout the winter. Coats Island birds returned through Hudson Strait as soon as open water areas became available in spring. Their sojourn in Hudson Bay coincided very closely with the occurrence of areas with <90% ice cover. In spite of the relatively large error in positions obtained from geolocation loggers, our results demonstrated the value of these devices by uncovering a number of previously unknown aspects of Thick-billed Murre non-breeding ecology in the Northwest Atlantic. Comparison of the non-breeding ecology based on SST experienced in winter show that the winter niche is broader than hitherto assumed, demonstrating that separate populations may experience different selection in the face of climate change.     

Carbon, nitrogen and phosphorus elemental stoichiometry in aquacultured and wild-caught fish and consequences for pelagic nutrient dynamics

The elemental carbon (C), nitrogen (N) and phosphorus (P) compositions of the whole-body and gut content of wild marine fish inhabiting the Bay of Biscay (Northeast Atlantic) were studied. Furthermore, the literature was examined for studies of aquacultured fish, reporting the elemental composition of the whole-body fish, that of their food, and nutrient assimilation and gross growth efficiencies (GGE). In both wild-caught and aquacultured fish, significant differences in C, N and P elemental composition were found between species, with P being the most variable component. Differences among species in terms of C, N and P content could be explained by varying proportions of storage compounds in whole-body fish, and varying degrees of ossification. Aquacultured fish feces were found to be P-rich, because of a lower P assimilation efficiency, compared to C or N assimilation efficiencies. Examination of aquacultured fish literature also revealed that C, N and P GGE and nutrient resupply ratios agreed with basic principles of homeostatic regulation of whole-body fish elemental composition. Extrapolation of the results to broader marine systems indicated that fish may be important for conveying nutrients toward the ocean interior.     

Successful DNA-based prenatal exclusion of juvenile neuronal ceroid lipofuscinosis

A family with two siblings, 10 and 8 years old, both with clinical and ultrastructural evidence of juvenile neuronal ceroid lipofuscinosis is described. The family was found to be informative for the restriction fragment length polymorphisms (RFLPs) detected by the probes pCJ52–95Ml (locus D16S148) and pCJ52-94Tl (locus D16S159) flanking the juvenile neuronal ceroid lipofuscinosis locus, CLN3. The parents were both heterozygous using these probes, while their two children with juvenile neuronal ceroid lipofuscinosis were both homozygous. Chorionic villi analysis showed that the fetus was heterozygous and had inherited the one allele of the mother which was not found in the two siblings. This suggested that the fetus had derived one healthy allele from the mother, the risk for a double crossing-over being less than 1 per cent. Electron microscopy showed no fingerprint inclusions in chorionic villi. The child was investigated at 6 months of age and found to be healthy, as new fingerprint inclusions were found at electron microscopy and no vacuolated lymphocytes were found in the blood smear. Due to the risk of heterogeneity, both DNA-based analysis and electron microscopy on chorionic villi are recommended for prenatal examination for juvenile neuronal ceroid lipofuscinosis.