Use of data on avian demographics and site persistence during overwintering to assess quality of restored riparian habitat

Monitoring responses by birds to restoration of riparian vegetation is relatively cost-effective, but in most assessments species-specific abundances, not demography, are monitored. Data on birds collected during the nonbreeding season are particularly lacking. We captured birds in mist nets and resighted banded birds to estimate species richness and diversity, abundance, demographic indexes, and site-level persistence of permanent-resident and overwintering migrants in remnant and restored riparian sites in California. Species richness in riparian remnants was significantly higher than in restored sites because abundances of uncommon permanent residents were greater in remnants. Species richness of overwintering migrants did not differ between remnants and restored sites. Responses among overwintering migrants (but not permanent residents) to remnant and restored riparian sites differed. Capture rates were higher in remnant or restored riparian sites for 7 of 10 overwintering migratory species. For Lincoln's Sparrows (Melospiza lincolnii) and White-crowned Sparrows (Zonotrichia leucophrys) proportions of older birds were significantly higher in remnants, even though capture rates of these species were higher in restored sites. Overwinter persistence of 4 migrant species was significantly higher in remnant than in restored sites. A higher proportion of Hermit Thrushes (Catharus guttatus, 56.3%), older Fox Sparrows (Passerella iliaca, 57.1%), Lincoln's Sparrows (59.7%), and White-crowned Sparrows (67.8%) persisted in remnants than restored sites. Our results suggest restored riparian sites provide habitat for a wide variety of species in comparable abundances and diversity as occurs in remnant riparian sites. Our demographic and persistence data showed that remnants supported some species and age classes to a greater extent than restored sites.     

A trophic cascade triggers collapse of a salt-marsh ecosystem with intensive recreational fishing

Overexploitation of predators has been linked to the collapse of a growing number of shallow-water marine ecosystems. However, salt-marsh ecosystems are often viewed and managed as systems controlled by physical processes, despite recent evidence for herbivore-driven die-off of marsh vegetation. Here we use field observations, experiments, and historical records at 14 sites to examine whether the recently reported die-off of northwestern Atlantic salt marshes is associated with the cascading effects of predator dynamics and intensive recreational fishing activity. We found that the localized depletion of top predators at sites accessible to recreational anglers has triggered the proliferation of herbivorous crabs, which in turn results in runaway consumption of marsh vegetation. This suggests that overfishing may be a general mechanism underlying the consumer-driven die-off of salt marshes spreading throughout the western Atlantic. Our findings support the emerging realization that consumers play a dominant role in regulating marine plant communities and can lead to ecosystem collapse when their impacts are amplified by human activities, including recreational fishing.     

Tissue,ontogenic and sex-related differences in δ<Superscript>13</Superscript>C and δ<Superscript>15</Superscript>N values of the oceanic squid <Emphasis Type="Italic">Todarodes filippovae</Emphasis> (Cephalopoda: Ommastrephidae)

Stable isotopes are increasingly used in the study of trophic interactions of many aquatic animals and most recently cephalopods. To evaluate the application of the method to squids, it is important to assess isotopic differences among and within consumer tissues that may confound the resolution of ecological relationships. Inter- and intra-tissue isotopic variation was examined in 55 individuals of the oceanic squid Todarodes filippovae that were collected at the beginning of April 2000 in the southwestern Indian Ocean (between 44°S, 76°E, and Saint Paul and Amsterdam islands, 38°S, 78°E). Delipidated soft tissues (mantle, arm, buccal mass, gill and reproductive organs) showed small δ¹³C and δ¹⁵N differences, which were probably tissue-specific. A lower carbon value was observed in the digestive gland as a consequence of incomplete lipid removal. Hard tissues, such as beaks and gladii, had lower ¹⁵N values than soft tissues, which can be explained by the presence of chitin, a ¹⁵N-depleted molecule. Females (n = 38) and males (n = 17) had identical δ¹³C values, but females showed higher δ¹⁵N values than males. The difference was size-related rather than sex-related, however, as females were generally larger than males. A comparison of similar-sized females and males produced identical nitrogen values. These data suggest dietary shifts from lower to higher trophic levels during growth, because δ¹⁵N values of large T. filippovae were much higher than that of small specimens. As expected, nitrogen values of lower beaks and gladii of large squids increased from the oldest to the most recently formed region, reflecting the progressive growth of chitinized tissues in parallel with dietary changes. Sequential sampling along the growth increments of squid beaks and gladii can likely be used to produce a chronological record of dietary information throughout an individual’s history.     

Reduction of CO2 emission by optimally tracking a pre-defined target

The recent global financial crisis has highlighted the need for balanced and efficient investments in the reduction of the greenhouse effect caused by emissions of CO₂ on a global scale. In a previous paper, the authors proposed a mathematical model describing the dynamic relation of CO₂ emission with investment in reforestation and clean technology. An efficient allocation of resources to reduce the greenhouse effect has also been proposed. Here, this model is used to provide estimates of the investments needed in land reforestation and in the adoption of clean technologies for an optimum emission and abatement of CO₂, for the period of 1996–2014. The required investments are computed to minimize deviations with respect to the emission targets proposed in the Kyoto Protocol for European Countries. The emission target can be achieved by 2014 with investments in reforestation peaking in 2004, and a reduction of the expected GDP of 42%, relative to 2006. Investments in clean technology should increase between 2008 and 2010 with maximum transfer figures around 70 million American dollars. Total (cumulative) costs are, however, relatively high depending on the price of carbon abatement and the rate at which the expected CO₂ concentration in the atmosphere should be reduced. Results highlight the advantages for policy makers to be able to manage investments in climate policy more efficiently, controlling optimum transfers based on a portfolio of actions that tracks a pre-defined CO₂ concentration target.     

Impact of consistent boundary layer mixing approaches between NAM and CMAQ

Discrepancies in grid structure, dynamics and physics packages in the offline coupled NWS/NCEP NAM meteorological model with the U.S. Environmental Protection Agency Community Multiscale Air Quality (CMAQ) model can give rise to inconsistencies. This study investigates the use of three vertical mixing schemes to drive chemistry tracers in the National Air Quality Forecast Capability (NAQFC). The three schemes evaluated in this study represent various degrees of coupling to improve the commonality in turbulence parameterization between the meteorological and chemistry models. The methods tested include: (1) using NAM predicted TKE-based planetary boundary height, h, as the prime parameter to derive CMAQ vertical diffusivity; (2) using the NAM mixed layer depth to determine h and then proceeding as in (1); and (3) using NAM predicted vertical diffusivity directly to parameterize turbulence mixing within CMAQ. A two week period with elevated surface O₃ concentrations during the summer 2006 has been selected to test these schemes in a sensitivity study. The study results are verified and evaluated using the EPA AIRNow monitoring network and other ozonesonde data. The third method is preferred a priori as it represents the tightest coupling option studied in this work for turbulent mixing processes between the meteorological and air quality models. It was found to accurately reproduce the upper bounds of turbulent mixing and provide the best agreement between predicted h and ozonesonde observed relative humidity profile inferred h for sites investigated in this study. However, this did not translate into the best agreement in surface O₃ concentrations. Overall verification results during the test period of two weeks in August 2006, did not show superiority of this method over the other 2 methods in all regions of the continental U.S. Further efforts in model improvement for the parameterizations of turbulent mixing and other surface O₃ forecast related processes are warranted.     

The impact of chemical lateral boundary conditions on CMAQ predictions of tropospheric ozone over the continental United States

A sensitivity study is performed to examine the impact of lateral boundary conditions (LBCs) on the NOAA-EPA operational Air Quality Forecast Guidance over continental USA. We examined six LBCS: the fixed profile LBC, three global LBCs, and two ozonesonde LBCs for summer 2006. The simulated results from these six runs are compared to IONS ozonesonde and surface ozone measurements from August 1 to 5, 2006. The choice of LBCs can affect the ozone prediction throughout the domain, and mainly influence the predictions in upper altitude or near inflow boundaries, such as the US west coast and the northern border. Statistical results shows that the use of global model predictions for LBCs could improve the correlation coefficients of surface ozone prediction over the US west coast, but could also increase the ozone mean bias in most regions of the domain depending on global models. In this study, the use of the MOZART (Model for Ozone And Related chemical Tracers) prediction for CMAQ (Community Multiscale Air Quality) LBC shows a better surface ozone prediction than that with fixed LBC, especially over the US west coast. The LBCs derived from ozonesonde measurements yielded better O₃ correlations in the upper troposphere.     

Potentially harmful elements in house dust from Estarreja,Portugal: characterization and genotoxicity of the bioaccessible fraction

Due to their behavioral characteristics, young children are vulnerable to the ingestion of indoor dust, often contaminated with chemicals that are potentially harmful. Exposure to potentially harmful elements (PHEs) is currently exacerbated by their widespread use in several industrial, agricultural, domestic and technological applications. PHEs cause adverse health effects on immune and nervous systems and can lead to cancer development via genotoxic mechanisms. The present study is an integrated approach that aims at assessing the genotoxicity of bioaccessible PHEs following ingestion of contaminated house dust. A multidisciplinary methodology associating chemical characterization of five house dust samples, extraction of the bioaccessible PHEs in gastric extracts by the unified BARGE method, determination of the bioaccessible fraction and in vitro genotoxicity of gastric extracts in adenocarcinoma gastric human (AGS) cells was developed. The five gastric extracts induced dose-dependent genotoxicity in AGS cells. Copper (bioaccessible concentration up to 111 mg/kg) was probably the prevalent PHE inducing primary DNA damage (up to 5.1-fold increase in tail DNA at 0.53 g/l of gastric extract). Lead (bioaccessible concentration up to 245 mg/kg) was the most prevalent PHE inducing chromosome-damaging effects (r = 0.55; p < 0.001 for micronucleated cells induction). The association of principal component analysis and Spearman’s correlations was decisive to understand the chromosome-damaging properties of the bioaccessible PHEs in AGS cells. This methodology could be used on a larger-scale study to provide useful information for science-based decision-making in regulatory policies, and a better estimation of human exposure and associated health risks.     

Lack of population structure in the fiddler crab Uca annulipes along an East African latitudinal gradient: genetic and morphometric evidence

Phylogeographic patterns in Uca annulipes sampled from 30 locations across an East African latitudinal gradient were investigated using mitochondrial DNA cytochrome oxidase I sequences and analysed together with patterns of morphometric differentiation. Four hundred and four specimens along the east African coast were sampled, and 18 haplotypes were encountered. Haplotype and nucleotide diversity values were very low and the phylogenetic analysis did not reveal any clear phylogeographic structure. Furthermore, the analysis of molecular variance and pairwise Φ _ST values showed no significant spatial population differentiation. Mismatch analyses and tests of neutrality supported the hypothesis that this species has undergone a fairly recent demographic expansion. Our results, therefore, failed to demonstrate significant geographical structure in the pattern of genetic variation, indicating that populations of U. annulipes are capable of extensive gene flow among mangroves along the coast. The genetic structure of this species could be panmictic due to a high amount of gene flow along the geographical gradient in study during the planktonic larval phase, when larvae are carried along stream by the dominant currents. Moreover, the morphometric analysis performed did not reveal differences of shape differentiation according to a geographical pattern, although significant differences among the sampling areas were found.     

Modelling the effects of extreme events on the dynamics of the amphipod Corophium orientale

The brackish water amphipod Corophium orientale is the dominant macroinvertebrate species in the upper Mira estuary, a small mesotidal system located in the southwest coast of Portugal. As climate changes will increase the frequency and intensity of extreme events such as floods and droughts, these will have a negative effect on benthic estuarine invertebrates, namely C. orientale. In order to understand the effects of these events on C. orientale, a dynamic model, based on published information and calibrated with field data, was developed and different scenarios were tested.For model construction, the annual development of three cohorts of C. orientale, their growth rates, and the establishment of the timing of each cohort rise and extinction are introduced. This structure can be repeated indefinitely, for years, and few parameters are required. The model simulations highlight the need for refuge areas that enable a fast recovery of the amphipod population after an extreme event and the recolozination of the affected areas.