Isolation and sequence of cDNA encoding a 3-methylcholanthrene-inducible cytochrome P450 from wild red sea bream,Pagrus major

We have isolated a cDNA clone of mRNA for the cytochrome P450 from a 3-methylcholanthrene (MC)-treated red sea bream,Pagrus major, using a cDNA fragment for rat P4501A2 as a probe. The cloned cDNA is ca. 1.8 kb long and contains an open reading frame of 1545 nucleotides for polypeptides of 515 amino acids. The deduced N-terminal amino acid sequence of the cDNA is very similar to that for purified cytochrome P450 protein from the marine fish scup, which was reported previously (Klotz et al. 1983). A conserved amino acid sequence containing a putative heme-binding cysteine is present in the equivalent position proximate to the C-terminus of the molecules. The deduced amino acid sequence shows more than 50% positional identity with known members of the mammalian aromatic hydrocarbon-inducible P450 family. RNA blot analysis indicates that P450 mRNA (s) is expressed in the liver, kidney, gill and gut of the MC-treatedP. major.     

Krill evolution and the Antarctic ocean currents: evidence of vicariant speciation as inferred by molecular data

The phylogenetic relationships of the Antarctic krill Euphausia superba, the key species in the Antarctic food web, and other Antarctic and sub-Antarctic cuphausiids have been investigated using the 16S ribosomal mitochondrial gene. The phylogenetic reconstructions indicated that the Antarctic species form a monophyletic clade separated by the non-Antarctic species. The results revealed a large genetic divergence between the Antarctic (E. superba and E. crystallorophias) and sub-Antarctic species (E. vallentini). The time of separation between these species, estimated from the molecular data, is around 20 million years ago, which is comparable with the geological time of the formation of a circum-Antarctic water circulation and the Antarctic Polar Frontal Zone. The euphausiid molecular phylogeny therefore represents evidence for vicariant speciation.     

Effect of chemical and microbial amendments on ammonia volatilization from composting poultry litter

Research has shown that aluminum sulfate (alum) and phosphoric acid greatly reduce ammonia (NH3) volatilization from poultry litter; however, no studies have yet reported the effects of these amendments on field-scale composting of poultry litter. The objectives of this study were to (i) evaluate NH3 volatilization from composting litter by measuring both NH3 volatilization and changes in total nitrogen (N) in the litter and (ii) evaluate potential methods of reducing NH3 losses from composting poultry litter. Poultry litter was composted for 68 d the first year and 92 d the second year. Eleven treatments were screened in Year 1, which included an unamended control, a microbial mixture, a microbial mixture with 5% alum incorporated into the litter, 5 and 10% alum rates either surface-applied or incorporated, and 1 and 2% phosphoric acid rates either surface-applied or incorporated. Treatments in Year 2 included an unamended control, a microbial mixture, alum (7% by fresh wt.), and phosphoric acid (1.5% by fresh wt.). Alum and phosphoric acid reduced NH3 volatilization from composting poultry litter by as much as 76 and 54%, respectively. The highest NH3 emission rates were from microbial treatments each year. Compost treated with chemical amendments retained more initial N than all other treatments. Due to the cost and N loss associated with composting poultry litter, composting is not economical from an agronomic perspective compared with the use of fresh poultry litter.     

Spatial variability in soil water and salinity in Tamarix community in a semiarid saline region of the upper Yellow River北大核心CSCD

Tamarix is widely distributed in semiarid saline regions of the upper Yellow River. The community of Tamarix affects the spatial distribution of soil water and salinity. It is important to explore the dynamic response relationship of Tamarix community and spatial distribution of soil water and salinity in order to evaluate the effects of vegetation community construction and ecological restoration in this region. The natural Tamarix community in the secondary saline-alkali land of the Ningxia Yellow River Irrigation Area was investigated in July 2016. Classical statistics and geostatistics were used to analyze the spatial distribution characteristics of soil water and salinity. The results showed that the soil water content was relatively low (1.98%-7.55%), whereas the soil salinity was high (average conductivity 10.28-25.38 mS/cm) in the study area. The variability coefficient range of soil water and salinity was 36.1%-83.7%, both with moderate variations. Furthermore, the variation degree of soil salinity decreased with the increase in soil depth. The soil water and salinity had obvious spatial structure characteristics, which was mainly affected by structural factors or structural factors associated with stochastic factors. The coefficients of nugget were 0.04%-49.88%, indicating the strong spatial correlation. The spatial distribution of soil water and salinity in Tamarix community showed a patchy pattern; the soil water and salinity distribution in the areas with high Tamarix growing density were considerably high. The correlation analysis showed that there was a positive correlation between soil water and salinity in the study area. In conclusion, soil water and salinity restrict the distribution and growth of Tamarix. Furthermore, the distribution and growth of Tamarix enhanced the spatial variability of soil water and salinity. Keywords. © 2018 Science Press. All rights reserved.     

Population structure and historical demography of the thorny skate (<Emphasis Type="Italic">Amblyraja radiata</Emphasis>, Rajidae) in the North Atlantic

Population genetic structure of the thorny skate (Amblyraja radiata) was surveyed in >300 individuals sampled from Newfoundland, Iceland, Norway, the Kattegat and the central North Sea. A 290-bp fragment of the mt cytochrome-b gene was first screened by SSCP. Sequences of SSCP haplotypes revealed 34 haplotypes, 14 of which were unique to Iceland, 3 to Newfoundland, 1 to Norway and 3 to the Kattegat. The global F _ST was weak but significant. Removal of the two Kattegat locations, which were the most differentiated, resulted in no significant genetic differentiation. Haplotype diversity was high and evenly distributed across the entire Atlantic (h = 0.8) with the exception of the North Sea (h = 0.48). Statistical parsimony revealed a star-like genealogy with a central widespread haplotype. A subsequent nested clade analysis led to the inference of contiguous expansion with evidence for long distance dispersal between Newfoundland and Iceland. Historical demographic analysis showed that thorny skates have undergone exponential population expansion that started between 1.1 million and 690,000 years ago; and that the Last Glacial Maximum apparently had little effect. These results strongly differ from those of a parallel study of the thornback ray (Raja clavata) in which clear structure and former refugial areas could be identified. Although both species have similar life history traits and overlapping ranges, the continental shelf edge apparently does not present a barrier to migration in A. radiata, as it does for R. clavata.     

Histological study of the effects of starvation on reared and wild-caught larval stone flounder,Kareius bicoloratus

Starvation tolerance of laboratory-reared larval stone flounder, Kareius bicoloratus, was examined at different temperatures and salinities during the winters of 1984, 1985 and 1986. Starvation tolerance decreased with increased temperature and exhibited low values with high salinities. The highest starvation tolerance observed at low salinity was just before the metamorphosis stage. Starvation tolerance showed little change until larvae were 11 d. It increased with age thereafter. Epithelial cell heights of the digestive tract and cell diameters of pancreas and liver were measured histologically in reared stone flounder during growth and starvation. These values decreased markedly in the starved condition. Aldehyde fuchsin positive granules in the rectal epithelium also disappeared during the short starved period. The nutitrional condition of wild-caught stone flounder larvae, collected in January and February 1986 from the Matsukawa-ura inlet, Fukushima, Japan, was also examined. Eighty percent of larvae were estimated to be in fed condition just before sampling. The changes in cell heights of digestive organs agreed with this estimate. These histological methods seem to be useful in assessing the nutritional condition of marine fish larvae.     

Environmentally friendly bleaching of cotton using laccases

A new strain of Trametes hirsuta was found to oxidize various cotton flavonoids. Here we show that laccases of this organism were responsible for oxidation of the flavonoids morin, luteolin, rutin and quercetin. Out of two laccases produced by T. hirsuta (60.7 and 51.0 kDa) the more prominent 60.7 kDa laccase was purified and showed K _m and k _cat values of 75.5, 20.9 and 49.4 μM and 72.5, 96.3 and 32.7 s⁻¹, hours on ABTS, syringaldazide and DMP, respectively. Pretreatment of cotton with the T. hirsuta laccase resulted in a whiteness increase of 8.5%.     

The Novel and Endemic Pathogen Hypotheses: Competing Explanations for the Origin of Emerging Infectious Diseases of Wildlife

Abstract:  Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis , is an emerging infectious disease implicated in declines of amphibian populations around the globe. An emerging infectious disease is one that has recently been discovered; has recently increased in incidence, geography, or host range; or is newly evolved. For any given outbreak of an emerging disease, it is therefore possible to state two hypotheses regarding its origin. The novel pathogen hypothesis states that the disease has recently spread into new geographic areas, whereas the endemic pathogen hypothesis suggests that it has been present in the environment but recently has increased in host range or pathogenicity. Distinguishing between these hypotheses is important, because the conservation measures needed to slow or stop the spread of a novel pathogen are likely to differ from those needed to prevent outbreaks of an endemic pathogen. Population genetics may help discriminate among the possible origins of an emerging disease. Current evidence suggests chytridiomycosis may be a novel pathogen being spread worldwide by carriers; until we know how much genetic variation to expect in an endemic strain, however, we cannot yet conclude that B. dendrobatidis is a novel pathogen.