The fire frequency analysis branch of the pyrostatistics tree: sampling decisions and censoring in fire interval data

Statistical characterization of past fire regimes is important for both the ecology and management of fire-prone ecosystems. Survival analysis—or fire frequency analysis as it is often called in the fire literature—has increasingly been used over the last few decades to examine fire interval distributions. These distributions can be generated from a variety of sources (e.g., tree rings and stand age patterns), and analysis typically involves fitting the Weibull model. Given the widespread use of fire frequency analysis and the increasing availability of mapped fire history data, our goal has been to review and to examine some of the issues faced in applying these methods in a spatially explicit context. In particular, through a case study on the massive Cedar Fire in 2003 in southern California, we examine sensitivities of parameter estimates to the spatial resolution of sampling, point- and area-based methods for assigning sample values, current age surfaces versus historical intervals in generating distributions, and the inclusion of censored (i.e., incomplete) observations. Weibull parameter estimates were found to be roughly consistent with previous fire frequency analyses for shrublands (i.e., median age at burning of ~30–50 years and relatively low age dependency). Results indicate, however, that the inclusion or omission of censored observations can have a substantial effect on parameter estimates, far more than other decisions about specifics of sampling.

Effects of algae-enriched rotifers on winter flounder (Pseudopleuronectes americanus) gene expression during metamorphosis

The aim of this study was to evaluate the effect of a dietary highly unsaturated fatty acid (HUFA) deficiency on winter flounder Pseudopleuronectes americanus metamorphosis by examining the growth and the expression of genes involved in some key metabolic processes: lipid digestion, oxidative stress, and growth. Three groups of fish were fed rotifers enriched with different blends of microalgae providing different HUFA profiles: (1) a diet comprising a mixture of three microalgae, Nannochloropsis oculata, Isochrysis galbana, and Pavlova lutheri (Cocktail diet), which contained a balanced combination of ecosapentaenoic acid (EPA), docosahexaenoic acid (DHA), and arachidonic acid (AA); (2) the N. oculata diet (Nanno diet), with a low level of DHA; and (3) the I. galbana diet (Tiso diet), characterized by low levels of EPA and AA. The results indicate that the need for DHA increased from settlement and for EPA and AA from 15 days after settlement. The lower HUFA content in the Tiso and Nanno diets did not affect larval development or lipid reserve accumulation. The superoxide dismutase gene expression suggests a reduced oxidative stress in the Cocktail group, and overall results indicate that gh gene expression could be a valuable indicator of development at the molecular level in response to dietary HUFA quality during metamorphosis in winter flounder.     

Species-specific dinoflagellate vertical distribution in temperature-stratified waters

Thermal stratification is increasing in strength as a result of higher surface water temperature. This could influence the vertical distribution of vertically migrating dinoflagellates. We studied the diel vertical distribution of the dinoflagellates Heterocapsa triquetra and Prorocentrum minimum using stratified laboratory columns with two thermoclines of different strength (ΔT° = 10 or 17 °C), with below cline temperature of 8 °C. Above the thermocline, nutrient depletion simulated the natural summer conditions in the Baltic Sea. Our study shows that H. triquetra and P. minimum can behave differently in terms of their vertical occurrence, both in space and in time when subjected to thermoclines of different strength. Also, both dinoflagellate species showed species-specific distribution patterns. In the ΔT° = 10 °C treatment, H. triquetra cells performed a diel vertical migration (DVM) behavior just above the thermocline, but not in the ΔT° = 17 °C. In the ΔT° = 17 °C, the cells did not migrate and cell densities in the water column decreased over time. Opposing results were observed for P. minimum, where a DVM pattern was found exclusively below the thermocline of ΔT° = 17 °C, while in the ΔT° = 10 °C treatment, no clear DVM pattern was observed, and the highest number of cells were found in the cold bottom water. These results indicate that an increase in thermal stratification can influence species-specific dinoflagellate distribution, behavior, and survival.     

Fuel loss and flexible fuel deposition rates in a long-distance migrant

Most migrating birds alternate flight bouts with stopovers, during which they rest and replenish the fuel used during flight (refueling). The rate of refueling (fuel deposition rate, FDR) affects stopover duration, and hence is an important determinant of the overall time required for migration. Although environmental and endogenous factors affect FDR, the urge to refuel depends on the anticipated distance to be travelled and possibly also on the amount of fuel used during the flight preceding stopover. Combining a field study with a fasting–refueling experiment on long-term captive songbirds, we tested whether the extent of fuel loss prior to refueling indeed affects FDR. In the field study, we took a comparative approach and determined FDR in two subspecies of northern wheatear (Oenanthe oenanthe) that differ greatly in the distance flown, and thus the extent of fuel used to reach our study (stopover) site. As both winter in western sub-Sahelian Africa, they face the same remaining migration distance. We found that FDR was higher in the subspecies that uses more fuel to get to our study site. Solidifying this result, in the experiment on captive northern wheatears, we found that the extent of fuel loss as a consequence of fasting explained most of the variation in subsequent FDR. The observation that experimental birds losing little fuel did not maximize their FDR suggests there are costs to rapid refueling. Our study shows that FDR is shaped not just by current environmental and endogenous conditions but also by fuel loss prior to refueling.     

The proton binding properties of biosorbents

Environmental Chemistry Letters - A broad variety of materials of biological origin have been successfully used in recent decades for the removal of pollutants from waters. These biosorbents...     

Human predisposition to cognitive impairment and its relation with environmental exposure to potentially toxic elements

New lines of evidence suggest that less than 10% of neurodegenerative diseases have a strict genetic aetiology and other factors may be prevalent. Environmental exposures to potentially toxic elements appear to be a risk factor for Parkinson’s, Alzheimer’s and sclerosis diseases. This study proposes a multidisciplinary approach combining neurosciences, psychology and environmental sciences while integrating socio-economic, neuropsychological, environmental and health data. We present the preliminary results of a neuropsychological assessment carried out in elderly residents of the industrial city of Estarreja. A battery of cognitive tests and a personal questionnaire were administered to the participants. Multivariate analysis and multiple linear regression analysis were used to identify potential relationships between the cognitive status of the participants and environmental exposure to potentially toxic elements. The results suggest a relationship between urinary PTEs levels and the incidence of cognitive disorders. They also point towards water consumption habits and profession as relevant factors of exposure. Linear regression models show that aluminium (R ² = 38%), cadmium (R ² = 11%) and zinc (R ² = 6%) are good predictors of the scores of the Mini-Mental State Examination cognitive test. Median contents (µg/l) in groundwater are above admissible levels for drinking water for aluminium (371), iron (860), manganese (250), and zinc (305). While the World Health Organization does not provide health-based reference values for aluminium, results obtained from this study suggest that it may have an important role in the cognitive status of the elderly. Urine proved to be a suitable biomarker of exposure both to elements with low and high excretion rates.     

Characterization and modelling of the heat transfers in a pilot-scale reactor during composting under forced aeration

The paper focused on the modelling of the heat transfers during composting in a pilot-scale reactor under forced aeration. The model took into account the heat production and the transfers by evaporation, convection between material and gas crossing the material, conduction and surface convection between gas and material in bottom and upper parts of the reactor. The model was adjusted thanks to the measurements practised during fifteen composting experiments in which five organic wastes were, each, composted under three constant aeration rates. Heat production was considered proportional to oxygen consumption rate and the enthalpy per mole oxygen consumed was assumed constant. The convective heat transfer coefficients were determined on basis of the continuous measurements of the temperatures of both the lid and the bottom part of the reactor. The model allowed a satisfying prediction of the temperature of the composting material. In most cases, the mean absolute discard between the experimental and the simulated temperatures was inferior to 2.5°C and the peaks of temperature occurred with less than 8h delay. For the half of the experiments the temperature discard between the simulated peak and the experimental one was inferior to 5°C. On basis of the calculation of a stoichiometric production of water through oxidation of the biodegradable organic matter, the simulation of water going out from material as vapour also allowed a rather satisfying prediction of the mass of water in final mixture. The influence of the aeration rate on every type of heat loss was characterized. Finally, the model was used to evaluate the impacts on material temperature caused by the change of the insulation thickness, the ambient temperature, take the lid away, the increase or the decrease of the mass of waste to compost.     

Evidence of nitrification and denitrification in high and low microbial abundance sponges

Aerobic and anaerobic microbial key processes were quantified and compared to microbial numbers and morphological structure in Mediterranean sponges. Direct counts on histological sections stained with DAPI showed that sponges with high microbial abundances (HMA sponges) have a denser morphological structure with a reduced aquiferous system compared to low microbial abundance (LMA) sponges. In Dysidea avara, the LMA sponge, rates of nitrification and denitrification were higher than in the HMA sponge Chondrosia reniformis, while anaerobic ammonium oxidation and sulfate reduction were below detection in both species. This study shows that LMA sponges may host physiologically similar microbes with comparable or even higher metabolic rates than HMA sponges, and that anaerobic processes such as denitrification can be found both in HMA and LMA sponges. A higher concentration of microorganisms in the mesohyl of HMA compared to LMA sponges may indicate a stronger retention of and, hence, a possible benefit from associated microbes.     

Non-linear ecological processes, fires, environmental heterogeneity and shrub invasion in northwestern Patagonia

The emergent behaviors of nature are not only the sum of interactions among ecosystem parts but also depend on the organization of these interactions. Fire, climate and vegetation patterns produce non-linear fire propagation across the landscape. Environmental heterogeneity, like outcrop presence and hare density, increases landscape patchiness and makes possible the occupation of fire refuges by plants, like Fabiana imbricata shrubs. We monitored shrub recruitment and cover during nine postfire years in northwestern Patagonia grasslands and we studied the long-term population dynamics under different environmental conditions through a matrix model, exploring different fire frequencies and spring precipitation regimes. Both, the field monitoring and the model seem to confirm the relationships between shrub invasion and fire. The climate change forecast predicts an increase in the frequency of El Niño Southern Oscillation phenomena that could causes more coupled fires—rainy springs in northwestern Patagonia, and consequently, more recruitment windows for shrubs, like F. imbricata. The matrix model also indicates that this scenario would be the most favourable for shrub invasion. Our results contribute to the knowledge of the ecosystem properties and processes, providing useful information to improve the grasslands sustainable use.     

Identification of sources of environmental lead in South Africa from surface soil geochemical maps

The bioavailability of lead in soil is of considerable importance to human and animal health. Although selective extraction has been explored as a more appropriate technique than total heavy metal analysis in environmental pollution assessments, such studies remain scarce globally and are almost non-existent in developing countries. Results for a large-scale study of extractable lead levels in undisturbed soil samples in South Africa identify several geographic areas of concern. Lead levels are considerably elevated relative to background levels in the Johannesburg urban and industrial area. Areas of active lead mining also exhibit higher surface soil values. Interestingly, areas of active and intensive coal mining activity display relatively low soil Pb values, possibly attributable to the relatively low heavy metal content of South African coal. In all instances, distribution of cadmium, a carcinogenic element, correlates with that of lead. The results demonstrate the usefulness of the quick and easy Mehlich-3 single extractant technique, an established technique in micronutrient studies, to simultaneously provide valuable environmental data for toxic metals such as Pb and Cd.