State of the marine environment at Little Bay Arm,Newfoundland and Labrador,Canada, 10 years after a "do nothing" response to a mine tailings spill

In 1989, the tailings pond dam at the site of a former copper mine near Little Bay, Newfoundland and Labrador, Canada, ruptured and tailings spilled into Little Bay Arm. At the time, no action was taken to arrest the flow of tailings or to mitigate the effects of the spill. To date, no action has been taken to repair the dam and tailings continue to flow into Little Bay Arm. As a result, the marine environment around Little Bay Arm has become contaminated with heavy metals from the tailings. However, the tailings are not the only source of heavy metals to the ecosystem. An old slag heap and what is presumably concentrated copper ore spilled during the loading of ore freighters, are also contributing to the ecosystem's metal load. Marine sediment throughout the Arm contained elevated concentrations of Cu, Ni, Zn, As, V, Co, and Mn. Beach material also contained elevated concentrations of metals with material near the slag heap being the most contaminated. At this site, Cu concentrations were in excess of 5000 mg kg(-1) dry weight, Zn greater than 3000 mg kg(-1) and Co concentrations exceeded 700 mg kg(-1). The highest concentrations of metals in biota were found near the slag heap, near the tailings dam breach, and at the site of the former concentrate loading dock. Despite elevated metal concentrations, the tailings and nearby sediment were not devoid of life. Bivalves and seaweed were abundant in the area and there were no obvious signs of tissue damage or disease in soft shell clams (Mya arenaria) living in the tailings. These clams may be suffering from chronic exposure to the tailings, however, evidence of lipid peroxidation in the clams was inconclusive.     

Y chromosome detection by Real Time PCR and pyrophosphorolysis-activated polymerisation using free fetal DNA isolated from maternal plasma

Objectives To validate the use of Real Time PCR, a widely used technique that can detect very low levels of Y chromosomal sequence, and to assess the use of a highly sensitive PCR technique, pyrophosphorolysis-activated polymerisation (PAP), for fetal sex determination using free fetal DNA (ffDNA). Methods The fetal sex was determined by Real Time PCR in 58 pregnancies using ffDNA isolated from maternal plasma. In parallel with the Real Time PCR experiments, the presence of Y chromosome sequence was also determined using PAP on 54 isolated ffDNA samples. Results Both techniques detected Y chromosome sequence at very low levels with 98% specificity and 100% sensitivity (Real Time n = 44, PAP n = 54). Furthermore, the PAP technique was shown to be more robust than the Real Time PCR as none of the samples tested failed to meet the acceptance criteria. Combining the two techniques for male fetal sex detection from maternal blood plasma increases the sensitivity and specificity to 100% in this series. Conclusions This study shows that both Real Time PCR and PAP can be used for Y chromosome detection on ffDNA. Furthermore, by using PAP in combination with Real Time PCR more reliable early prenatal sexing can be performed using ffDNA. Copyright © 2007 John Wiley & Sons, Ltd.     

Agroecosystem energy transitions: exploring the energy-land nexus in the course of industrialization

Regional Environmental Change -     

Environmental Accumulation of Airborne Fluorides in Romania

The nature and extent of pollution from an aluminium smelter and a fertiliser factory in Romania were studied. These are large industrial complexes, and both types of industry are known to release fluorides into the atmosphere. In grass samples collected from around the aluminium smelter, the maximum fluoride levels were found to be 4023mgkg^–1 and 162mgkg^–1 in unwashed and washed grass samples respectively, and 89mgkg^–1 in soils. For the fertiliser factory, the maximum levels in washed grasses were found to be 207mgkg^–1, and 11mgkg^–1 in the soils. In both locations, these maximum values were obtained in samples collected from within 200m of the factory limits, and compare with regional background levels of less than 10mgkg^–1 for grasses and 2mgkg^–1 for soils. The high fluoride levels of fluoride in the grasses are sufficient to give cause for concern for the effects that these could have on the local population and on grazing animals.     

Habitat Improvements and Fish Community Response Associated with an Agricultural Two‐Stage Ditch in Mower County,Minnesota

Water quality and stream habitat in agricultural watersheds are under greater scrutiny as hydrologic pathways are altered to increase crop production. Ditches have been traditionally constructed to remove water from agricultural lands. Little attention has been placed on alternative ditch designs that are more stable and provide greater habitat diversity for wildlife and aquatic species. In 2009, 1.89 km of a conventional drainage ditch in Mower County, Minnesota, was converted to a two‐stage ditch (TSD) with small, adjacent floodplains to mimic a natural system. Cross section surveys, conducted pre‐ and post‐construction, generally indicate a stable channel with minor adjustments over time. Vegetation surveys showed differences in species composition and biomass between the slopes and the benches, with changes ongoing. Longitudinal surveys demonstrated a 12‐fold increase in depth variability. Fish habitat quality improved with well‐sorted gravel riffles and deeper pool habitat. The biological response to improved habitat quality was investigated using a Fish Index of Biological Integrity (FIBI). Our results show higher FIBI scores post‐construction with scores more similar to natural streams. In summary, the TSD demonstrated improvements in riparian and instream habitat quality and fish communities, which showed greater fish species richness, higher percentages of gravel spawning fish, and better FIBI scores. This type of management tool could benefit ditches in other regions where gradient and geology allow.     

Bayesian analysis of Jolly-Seber type models

We propose the use of finite mixtures of continuous distributions in modelling the process by which new individuals, that arrive in groups, become part of a wildlife population. We demonstrate this approach using a data set of migrating semipalmated sandpipers (Calidris pussila) for which we extend existing stopover models to allow for individuals to have different behaviour in terms of their stopover duration at the site. We demonstrate the use of reversible jump MCMC methods to derive posterior distributions for the model parameters and the models, simultaneously. The algorithm moves between models with different numbers of arrival groups as well as between models with different numbers of behavioural groups. The approach is shown to provide new ecological insights about the stopover behaviour of semipalmated sandpipers but is generally applicable to any population in which animals arrive in groups and potentially exhibit heterogeneity in terms of one or more other processes.