Use of the chemical cleavage of mismatch method for prenatal deficiency diagnosis of alpha-1-antitrypsin

The most common mutation in alpha-1-antitrypsin deficiency, conversion of a G to an A at base 9989 (PI-Z), was detected with the chemical cleavage of mismatch method, demonstrating the power of the method for prenatal diagnosis. Exon V of the gene was amplified using the polymerase chain reaction and heteroduplexes were formed to test for the presence of the mutation. The predicted C mismatch was readily detectable with hydroxylamine, and by making the probe from the chorionic villus sample it was possible to determine that the fetus was heterozygous, not homozygous, for the mutation.     

Pursuing an integrated development and climate policy framework in Africa: options for mainstreaming

Climate change presents a major threat to the prospects for sustained economic development in Africa. In spite of this, climate change concerns do not feature prominently in the implementation of national and regional development programmes. The present paper identifies the likely trade-offs and synergies that may emerge from an integrated ‘development-climate’ approach to policy making. Also, the paper presents the case for the formulation and evaluation of an integrated policy approach based on four principle criteria, including; long-term environmental effectiveness, equity considerations, cost-effectiveness and the institutional compatibility of the policy combinations. What is more? The paper suggests specific options for mainstreaming climate change adaptation and mitigation in various sectoral development agenda such as; agricultural intensification, poverty eradication, rural development, urban renewal, energy security of supply and trade. Given the wide divergence of socio-economic systems and the peculiar challenges faced by individual countries in the continent, further research is required on robust country-specific strategies for pursuing an integrated development-climate policy framework.     

Challenges to achieving a successful transition to a low carbon economy in South Africa: examples from poor urban communities

South Africa faces several development challenges including those linked to climate change. Energy usage in South Africa, for example, is already constrained because of a range of development challenges (the dependence on cheap coal as a heating source; energy availability; access; affordability of alternative energy sources; and a range of health impacts, including air pollution). Notwithstanding calls for a transition to a low carbon economy, there have been few, recent assessments in South Africa of the costs associated with such a transition, particularly the social and economic costs for the poor who use energy in a variety of ways. In this paper we focus on trying to unravel some of the complex energy-use behaviour including understanding what drives consumers in resource-poor areas to choose and use persistently risky energy options. Analysis of qualitative data in two township areas, Doornkop and Kwaguqa, shows that township households, whether electrified or not, continue to burn coal. In both study areas, an estimated 80% of electrified households burn coal for space heating and cooking and also make use of multiple fuel sources for a range of activities. Although the major obstacles preventing people from discontinuing domestic coal combustion are poverty, the ready availability and social acceptability of coal together with other social customs cannot be underrated. This paper therefore highlights some of the persistent challenges associated with sustainable energy transitions in South Africa including implications for improved mitigation and adaptation for the energy sector in wider climate change efforts.     

Optimization of Methods for Detecting Hepatitis A Virus in Food

Hepatitis A virus (HAV) is currently recognized as an important human food borne pathogen, and it is one of the most resistant enteric RNA viruses, is highly infectious, and may lead to widespread outbreaks. The aim of this study was to optimize the methods to detect HAV from artificially contaminated food. To this end, strawberry and lettuce were experimentally contaminated with HAV suspension containing 6 × 10⁶ copies/ml. After contamination, HAV persistence and washing procedure were evaluated at 0, 1, 3, 7, and 9 days of storage. Five elution buffers (PBS (pH 7.4)/0.1% Tween80; 50 mM glycine/3% (wt/vol) beef extract (pH 9.5); PBS (pH 7, 4); 25 mM glycine/0.1 Tween80; and 1 M sodium bicarbonate) were used to elute the virus, and qualitative and quantitative PCR were used for HAV detection. HAV was detected by qualitative and quantitative PCR using any of the five elution buffers, but PBS was the most effective. Even after washing, HAV was detected up to 9 days after contamination by quantitative PCR. Quantitative PCR was more sensitive than qualitative PCR since samples containing viral load lower than 1.4 × 10³ copies/ml could not be detected by qualitative PCR. Quantitative PCR can be used for rapid detection of food borne viruses and will help in the monitoring and control of food borne disease.     

Evaluation of British Columbia Ministry of Forests aboriginal rights and title-consultation guidelines — the Ditidaht case study

The British Columbia Ministry of Forests’ “Aboriginal Rights and Title — Consultation Guidelines”, prepared in response to a Supreme Court of Canada decision on aboriginal rights and title, presents an interesting example of how common law influences provincial environmental policy. The policy addresses the British Columbia government’s fiduciary duty to First Nations and requires staff to consult with aboriginals during operational forestry planning. Adequate understanding of the policy is essential for lawful forest management. The Consultation Guidelines have become a key environmental policy in British Columbia.This evaluation will increase understanding of the Consultation Guidelines and aboriginal title for forest practitioners and policy makers. Within the context of a Vancouver Island case study, the policy is analyzed in view of the following criteria: effectiveness, efficiency, equity, and effort. Even though the policy is over 2 years old and the government is actively managing forests in an area under negotiation for treaty, the policy has yet to be implemented. As a result, aboriginal concerns about the long-term environmental and economic sustainability of current forest practices go unheeded. This situation potentially jeopardizes the government’s ability to address its fiduciary responsibilities to aboriginals, as defined in case law and the Canadian Constitution.     

Climate change and temperature-dependent biogeography: oxygen limitation of thermal tolerance in animals

Recent years have shown a rise in mean global temperatures and a shift in the geographical distribution of ectothermic animals. For a cause and effect analysis the present paper discusses those physiological processes limiting thermal tolerance. The lower heat tolerance in metazoa compared with unicellular eukaryotes and bacteria suggests that a complex systemic rather than molecular process is limiting in metazoa. Whole-animal aerobic scope appears as the first process limited at low and high temperatures, linked to the progressively insufficient capacity of circulation and ventilation. Oxygen levels in body fluids may decrease, reflecting excessive oxygen demand at high temperatures or insufficient aerobic capacity of mitochondria at low temperatures. Aerobic scope falls at temperatures beyond the thermal optimum and vanishes at low or high critical temperatures when transition to an anaerobic mitochondrial metabolism occurs. The adjustment of mitochondrial densities on top of parallel molecular or membrane adjustments appears crucial for maintaining aerobic scope and for shifting thermal tolerance. In conclusion, the capacity of oxygen delivery matches full aerobic scope only within the thermal optimum. At temperatures outside this range, only time-limited survival is supported by residual aerobic scope, then anaerobic metabolism and finally molecular protection by heat shock proteins and antioxidative defence. In a cause and effect hierarchy, the progressive increase in oxygen limitation at extreme temperatures may even enhance oxidative and denaturation stress. As a corollary, capacity limitations at a complex level of organisation, the oxygen delivery system, define thermal tolerance limits before molecular functions become disturbed.     

Practical environmental monitoring of major construction projects

Independent teams undertook environmental monitoring of particular concentrations of major construction projects forming part of Hong Kong’s U.S. $20 billion airport infrastructure programme located in dense urban areas. The team combination of environmental specialists with experienced civil engineers enabled pragmatic mitigation measures to be developed and accepted by the construction personnel with the result that potentially significant adverse impacts were averted. The authors discuss the mechanism and success of this innovative approach.     

The use of ultraviolet germicidal irradiation (UVGI) in disinfection of airborne bacteria

Contamination of indoor air by microbial pollutants has been increasingly recognized as a public health problem, and may be responsible for building-related illness (BRI) and sick-building syndrome (SBS). Bioaerosols such as fungi, bacteria, and viruses in indoor air can cause allergic and irritant responses, infectious diseases, respiratory problems, and hypersensitivity reactions. People sensitive to indoor environmental problems complain of a wide variety of symptoms ranging from headache, fatigue, nausea, sinus congestion, to eye, nose, and throat irritations.Although ultraviolet germicidal irradiation (UVGI) with a predominant wavelength of 254 nm has been used for air disinfection for many years to minimize microbial numbers in the air, few quantitative data are available on the radiation susceptibilities of individual airborne microbes. There have been a number of UVGI studies documenting the effectiveness of UVGI for the control of microbes in controlled settings. Many of these studies documented the effectiveness of UVGI against airborne tuberculosis organisms.The studies described here used commercial type fan-powered shielded UVGI-containing fixtures to evaluate their effectiveness in air disinfection. Aerosolization tests were done in the contained environment of a negative pressure bioaerosol stainless steel testing chamber 0.75 m wide·3.7 m long. The chamber was designed so that microbes could be safely aerosolized and contained while traversing the chamber through the UVGI-containing fix-tures. Four commercial (Purair UV Germicidal Systems, Mount Vernon, N.Y.) fan-powered UVGI-containing fix-tures placed in the chamber were individually evaluated for their ability to disinfect individual bioaerosols of air-borne bacteria.Air samples were taken at the inlet and outlet of the UVGI-containing units positioned in the bioaerosol chamber, using Ace Glass all-glass impingers (AGI-30). Five bacterial species were individually aerosolized to evaluate their kill. The bacteria used to test all of the UVGI-containing units were vegetative cells of Escherichia coli, Micrococcus luteus, Pseudomonas fluorescens, Staphylococcus aureus, and endospores of Bacillus subtilis. Based upon the concentration of bioaerosols collected at the inlet and outlet of the fixtures tested, the total overall microbial kills for the four fixtures with the filters in place and the UVGI units on were more than 99% for all the airborne vegetative bacteria tested, and a mean of over 75% for the B. subtilis endospores.All of the fixtures were efficient in the kill of the test vegetative bacteria used, even the more UVGI-resistant M. luteus vegetative cells and endospores of B. subtilis. Units such as these may provide an economical way to supplement existing air cleaning procedures used in indoor environments, and to kill airborne bacteria effectively without human exposure to UV light.     

Mathematical model for the microbial metabolism of glucose induced enhanced biological phosphorus removal in an anaerobic/aerobic sequential batch reactor

Glucose plays a significant role in enhanced biological phosphorus removal (EBPR). Previous experimental studies have shown that in addition to acetate, glucose can induce and maintain a successful EBPR performance under certain operating procedures. Mathematical modeling of the EBPR metabolism is an important consideration that is necessary to produce a deeper insight into this process. In this study, four anaerobic reactions plus four aerobic reactions with fourteen kinetic constants are structured to describe the dynamic behavior of the key metabolic components in the glucose induced EBPR system. The development of the stoichiometric coefficients for the reactions is based on fundamental biochemical principles. The model describes the dynamics of the important storage compounds, which are considered separately from the active biomass. Sequential batch experiments were performed to find the optimum model parameters using sludges exhibiting stable EBPR from glucose fed system. The maximum specific substrate conversion rate in the glucose model is composed of two factors: the maximum specific rates of glucose direct conversion to PHV (q _gv ^max ) and glucose conversion to glycogen q _gl ^max , which are 14.1 and 699.7 C-mmol/C-mmol·h, respectively. The maximum specific rate of polyphosphate synthesis k _pp ^max is 0.2 P-mmol/C-mmol·h. The model with the best-fit parameters satisfactorily simulates the dynamic behavior of the key components during both anaerobic and aerobic conditions.     

Carbon mitigation potential and costs of forestry options in Brazil,China, India,Indonesia, Mexico,the Philippines and Tanzania

This paper summarizes studies of carbon (C) mitigation potential and costs of about 40 forestry options in seven developing countries. Each study uses the same methodological approach – Comprehensive Mitigation Assessment Process (COMAP) – to estimate the above parameters between 2000 and 2030. The approach requires the projection of baseline and mitigation land-use scenarios. Coupled with data on a per ha basis on C sequestration or avoidance, and costs and benefits, it allows the estimation of monetary benefit per Mg C, and the total costs and carbon potential. The results show that about half (3.0 Pg C) the cumulative mitigation potential of 6.2 Petagram (Pg) C between 2000 and 2030 in the seven countries (about 200× 10⁶ Mg C yr^-1) could be achieved at a negative cost and the remainder at costs ranging up to $100 Mg C^-1. About 5 Pg C could be achieved, at a cost less than $20 per Mg C. Negative cost potential indicates that non-carbon revenue is sufficient to offset direct costs of these options. The achievable potential is likely to be smaller, however, due to market, institutional, and sociocultural barriers that can delay or prevent the implementation of the analyzed options.