Phylogeography of Australia’s king brown snake (Pseudechis australis) reveals Pliocene divergence and Pleistocene dispersal of a top predator

King brown snakes or mulga snakes (Pseudechis australis) are the largest and among the most dangerous and wide-ranging venomous snakes in Australia and New Guinea. They occur in diverse habitats, are important predators, and exhibit considerable morphological variation. We infer the relationships and historical biogeography of P. australis based on phylogenetic analysis of 1,249 base pairs from the mitochondrial cytochrome b, NADH dehydrogenase subunit 4 and three adjacent tRNA genes using Bayesian, maximum-likelihood, and maximum-parsimony methods. All methods reveal deep phylogenetic structure with four strongly supported clades comprising snakes from New Guinea (I), localities all over Australia (II), the Kimberleys of Western Australia (III), and north-central Australia (IV), suggesting a much more ancient radiation than previously believed. This conclusion is robust to different molecular clock estimations indicating divergence in Pliocene or Late Miocene, after landbridge dispersal to New Guinea had occurred. While members of clades I, III and IV are medium-sized, slender snakes, those of clade II attain large sizes and a robust build, rendering them top predators in their ecosystems. Genetic differentiation within clade II is low and haplotype distribution largely incongruent with geography or colour morphs, suggesting Pleistocene dispersal and recent ecomorph evolution. Significant haplotype diversity exists in clades III and IV, implying that clade IV comprises two species. Members of clade II are broadly sympatric with members of both northern Australian clades. Thus, our data support the recognition of at least five species from within P. australis (auct.) under various criteria. We discuss biogeographical, ecological and medical implications of our findings.Electronic Supplementary Material  Supplementary material is available in the online version of this article at     

Musterbildung bei Drosophila

Drosophila proved an excellent system to study molecular processes in establishing the body pattern of an embryo. Genes which are active during oogenesis provide localized cues which regulate a cascade of zygotic genes that determines the developmental fate of the blastoderm cells along the longitudinal axis of the embryo.     

Tracing the diet of the monitor lizard Varanus mabitang by stable isotope analyses (delta(15)N,delta(13)C)

In this study, we used analyses of stable isotopes of nitrogen ('¹⁵N) and carbon ('¹³C) to determine the trophic ecology of the monitor lizard Varanus mabitang. Stable isotopes from claws, gut contents, and soft tissues were measured from the type specimen. Samples from Varanus olivaceus, Varanus prasinus, Varanus salvator, the herbivorous agamid lizard Hydrosaurus pustulatus, and some plant matter were included for comparison. Our data show a rapid decrease in '¹³C (about10‰) from food plants towards gut contents and soft tissues of herbivorous species. For the varanids, we found a significant linear correlation of decreasing '¹³C and increasing '¹⁵N from herbivorous towards carnivorous species. In terms of trophic isotope ecology, the type specimen of V. mabitang is a strict herbivore. Thus it differs significantly in its isotopic composition from the morphologically next closest related species V. olivaceus. The most highly carnivorous species is V. salvator, while '¹⁵N values for V. prasinus and V. olivaceus are intermediate. Claws provide very valuable samples for such measurements, because they can be sampled from living animals without harm. Additionally, their range of variability is relatively small in comparison with measurements from soft tissues.     

Microscale genetic differentiation in a sessile invertebrate with cloned larvae: investigating the role of polyembryony

Microscale genetic differentiation of sessile organisms can arise from restricted dispersal of sexual propagules, leading to isolation by distance, or from localised cloning. Cyclostome bryozoans offer a possible combination of both: the localised transfer of spermatozoa between mates with limited dispersal of the resulting larvae, in association with the splitting of each sexually produced embryo into many clonal copies (polyembryony). We spatially sampled 157 colonies of Crisia denticulata from subtidal rock overhangs from one shore in Devon, England at a geographic scale of ca. 0.05 to 130 m plus a further 21 colonies from Pembrokeshire, Wales as an outgroup. Analysis of molecular variance (AMOVA) revealed that the majority (67%) of genetic variation was distributed among individuals within single rock overhangs, with only 16% of variation among different overhangs within each shore and 17% of variation between the ingroup and outgroup shores. Despite local genetic variation, pairwise genetic similarity analysed by spatial autocorrelation was greatest at the smallest inter-individual distance we tested (5 cm) and remained significant and positive across generally within-overhang comparisons (<4 m). Spatial autocorrelation and AMOVA analyses both indicated that patches of C. denticulata located on different rock overhangs tended to be genetically distinct, with the switch from positive to negative autocorrelation, which is often considered to be the distance within which individuals reproduce with their close relatives or the radius of a patch, occurring at the 4–8 m distance class. Rerunning analyses with twenty data sets that only included one individual of each multilocus genotype (n = 97) or the single data set that contained just the unique genotypes (n = 67) revealed that the presence of repeat genotypes had an impact on genetic structuring (PhiPT values were reduced when shared genotypes were removed from the dataset) but that it was not great and only statistically evident at distances between individuals of 1–2 m. Comparisons to a further 20 randomisations of the data set that were performed irrespective of genotype (n = 97) suggested that this conclusion is not an artefact of reduced sample size. A resampling procedure using kinship coefficients, implemented by the software package GENCLONE gave broadly similar results but the greater statistical power allowed small but significant impacts of repeat genotypes on genetic structure to be also detected at 0.125–0.5 and 4–16 m. Although we predict that a proportion of the repeat multilocus genotypes are shared by chance, such generally within-overhang distances may represent a common distance of cloned larval dispersal. These results suggests that closely situated potential mates include a significant proportion of the available genetic diversity within a population, making it unlikely that, as previously hypothesised, the potential disadvantage of producing clonal broods through polyembryony is offset by genetic uniformity within the mating neighbourhood. We also report an error in the published primer note of Craig et al. (Mol Ecol Notes 1:281–282, 2001): loci Cd5 and Cd6 appear to be the same microsatellite. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Physiological response of the cold-seep mussel Bathymodiolus childressi to acutely elevated temperature

It is predicted that deep-sea animals adapted to thermally stable conditions should be highly sensitive to temperature change and should not have inducible heat-shock responses. This premise was tested with the cold-seep mussel Bathymodiolus childressi Gustafson, 1998 from 750 m depth in the Gulf of Mexico at a site known as Brine Pool NR-1 (27°43.4157N, 91°16.756W). Mussels were collected during February 2003. Site temperature, measured in different months between 1995 and 2005, ranged between 6.5 and 7.2°C. Although Brine Pool NR-1 is stenothermal, hydrogen sulfide, oxygen, and salinity vary over temporal and spatial scales. In laboratory experiments, B. childressi survived increases up to approximately 20°C above ambient temperature for 6 h before suffering greater than 50% mortality. Although a high thermal tolerance was observed, B. childressi did not express an inducible 70 kDa heat-shock protein. However, high constitutive levels of hsp70 were present in B. childressi suggesting a necessity to remediate protein damage from stressors other than elevated temperature; these constitutive proteins probably confer an indirect thermal tolerance.     

Use of Riparian Buffer Strips as Movement Corridors by Forest Birds

We conducted a 3-year field experiment to measure the frequency of bird movements through riparian buffer strips before and after harvesting of adjacent forest. Our study was conducted in the boreal mixed wood forest of Alberta and was designed to determine empirically whether songbirds use riparian buffer strips of forest connecting forest reserves as corridors and if they move along these buffer strips more frequently than they cross adjacent clearcuts. We used mist nets to obtain an index of the frequency of bird movement in the forest, and we observed bird movements across adjacent clearcuts for comparison. We predicted that the frequency of movement would be greater (1) in buffer strips after harvesting of adjacent forest than before harvesting, (2) in buffer strips than across clearcuts and, (3) in buffer strips than at control sites (lakeshore forest with no adjacent clearcuts). After adjusting for year-to-year variation in abundance, we found that capture rates increased significantly from pre- to post-harvest, but only for juveniles. Capture rates of adults decreased immediately after harvesting, probably because of the removal of an adjacent source of birds that previously moved through the lakeside forest. Movement rates of forest species in clearcuts were significantly lower than capture rates in the forest. The number of adults captured was positively correlated with the number of territories in the buffer strips, indicating that most birds captured were probably residents. The number of local territories was a poor predictor of juvenile captures, supporting the notion that juveniles were likely dispersing individuals. Our results indicate that buffer strips enhanced movements of juveniles (i.e., acted as corridors) and maintained movement rates of adults. Furthermore, there appeared to be a threshold distance between reserves below which birds may be less reluctant to fly across openings, making corridor use less important.     

Ökotoxikologische Untersuchung von Sedimenten und Schwebstoffen

The potential risk of ground-water contamination through the infiltration of contaminants originating from suspended matter and sediments deposited within flood retention areas in the Upper Rhine valley, as well as subsequent problems for drinking water production, were analyzed by means of the bacterial dehydrogenase activity (DHA; sediment contact test) assay with Arthrobacter globiformis and in a prolonged embryo toxicity assay using zebrafish (Danio rerio). Since the direct uptake of contaminants from particle-bound sources has usually been assumed to play only a minor role in bioaccumulation, the availability of organic extracts to biota has generally been regarded as being overestimated. In order to confirm or discard this hypothesis, organic (acetone) extracts of recently suspended, freeze-dried matter, as well as freeze-dried sediments collected from Rhine flood plains (i.e. soil samples) were compared to corresponding native samples in order to screen for the relative availability of particle-bound contaminants. Whereas a significantly higher ecotoxicological burden was observed for some native soil samples, organic extracts of suspended matter proved to be more toxic than corresponding native samples when compared to organic extracts using each test system. With respect to organic extracts, the suspended matter samples were more toxic than soil samples taken from a rarely flooded site. In contrast to the native samples, the rarely flooded soils revealed a higher toxicity than suspended matter. Therefore, organic extracts did not necessarily overestimate the toxicity of soil and suspended matter samples. Moreover, considerable toxicity of particle-bound contaminants to both bacteria and fish embryos, even in native samples, corroborate the hypothesis that particle-bound contaminants may be more readily available than is generally assumed.