Round your numbers in rank tests: exact and asymptotic inference and ties

Non-parametric statistical tests are commonly used in the behavioral sciences. Researchers need to be aware that non-parameteric methods involving ranks can perform unreliably as a result of very small amounts of noise added in the storage and manipulation of values by computers, causing spurious reduction in the number of ties. In order to avoid this problem, researchers should round values to an appropriate number of decimal places prior to the ranking procedure to ensure that data points whose values cannot be separated according to the precision of their measurement are recorded as having identical rank. We also recommend exact rather than asymptotic evaluation of p values in non-parametric statistical tests.     

Bedeutung der Expositionswege auf Bioakkumulation und Wirkung in C. elegans

Different uptake routes of contaminants were analysed with focus on particle-bound pollutants. Bioavailability of cadmium was determined with quantitative mRNA-analysis using the expression of the “cadmium responsive gene” cdr- in Caenorhabditis elegans. Comparable experiments were performed with fluoranthene as organic pollutant. The exposure in medium was compared with and without bacteria as food particles. Both bioaccumulation and toxic effects were most influenced via the food exposure. Inorganic particles increased also the uptake of cadmium, but significantly less than food or mixtures of food and inorganic particles. The exposure of fluoranthene reduced the reproduction of the nematodes, if a gene expression threshold was exceeded. However, bioavailabilty of fluoranthene via food particles caused a faster response of the cyp-expression. Thus means, the internal availability is crucial influenced by the uptake route.     

Chaotic genetic patchiness and high relatedness of a poecilogonous polychaete in a heterogeneous estuarine landscape

The genetic structure of benthic marine invertebrates is often described as “chaotic” when genetic structure cannot be explained and barriers to dispersal and gene flow cannot be identified. Here, chaotic patterns of genetic structure for the polychaete Pygospio elegans (Claparède) sampled at 16 locations from the heterogeneous Isefjord–Roskilde Fjord estuary complex in Denmark were found. There was no isolation by distance, and the geography of the estuary complex did not seem to pose a barrier to dispersal and gene flow in this species. We investigated whether characteristics of the environment could be related to the genetic structure and possibly restrict gene flow in this species. Additionally, since P. elegans is poecilogonous, producing larvae with different pelagic developmental periods, we investigated whether observed developmental modes in the samples might clarify the genetic patterns. None of the tested factors explained the population genetic structure. However, a high degree of relatedness among individuals in almost all samples was found. Samples with a larger percentage of young individuals had more related individuals, suggesting that different cohorts could be comprised of individuals with different degrees of relatedness. Relatedness within a site could be increased by limited larval dispersal, collective dispersal of related larvae, sweepstakes reproductive success, or asexual reproduction, but distinguishing between these requires further study. Using a “seascape genetics” approach allowed us to investigate some of the numerous potential factors that could influence population genetic structure in a poecilogonous species.     

A performance-based tabular approach for joint systematic improvement of risk control and resilience applied to telecommunication grid,gas network,and ultrasound localization system

Environment Systems and Decisions - Organizational and technical approaches have proven successful in increasing the performance and preventing risks at socio-technical systems at all scales....     

A new ecotoxicological test method for genetically modified plants and other stressors in soil with the black fungus gnat <Emphasis Type="Italic">Bradysia impatiens</Emphasis> (Diptera): current status of test development and dietary effects of azadirachtin on larval development and emergence rate

Background

Few suitable and standardized test methods are currently available to test the effects of genetically modified plants (GMP) on non-target organisms. To fill this gap and improve ecotoxicological testing for GMP, we developed a new soil ecotoxicological test method using sciarid larvae as test organisms.

Results

Bradysia impatiens was identified as a candidate species. Species of the genus Bradysia occur in high numbers in European agroecosystems and B. impatiens can be reared in the laboratory in continuous culture. A functional basic test design was successfully developed. Newly hatched larvae were used as the initial life stage to cover most of the life cycle of the species during the test. Azadirachtin was identified as a suitable reference substance. In several tests, the effects of this substance on development time and emergence rate varied for different temperatures and test substrates. The toxicity was higher at 25 °C compared to 20 °C and in tropical artificial soil compared to coconut fiber substrate.

Conclusions and outlook

Results suggest that the developed test system is suitable to enter a full standardization process, e.g., via the Organisation for Economic Co-operation and Development. Such a standardization would not only assist the risk assessment of GMP, but could include other stressors such as systemic pesticides or veterinary pharmaceuticals reaching the soil, e.g., via spreading manure. The use of sciarid flies as test organisms supports recommendations of EFSA, which stressed the ecological role of flies and encouraged including Diptera into test batteries.

     

A unified approach for including non-extractable residues (NER) of chemicals and pesticides in the assessment of persistence

All chemicals form non-extractable residues (NER) to various extents in environmental media like soil, sediment, plants and animals. NER can be quantified in environmental fate studies using isotope-labeled (such as ¹⁴C or ¹³C) tracer compounds. Previous NER definitions have led to a mismatch of legislation and state of knowledge in research: the residues are assumed to be either irreversibly bound degradation products or at least parts of these residues can be released. In the latter assumption, soils and sediments are a long-term source of slowly released residues. We here present a conceptual experimental and modeling approach to characterize non-extractable residues and provide guidance how they should be considered in the persistence assessment of chemicals and pesticides. Three types of NER can be experimentally discriminated: sequestered and entrapped residues (type I), containing either the parent substance or xenobiotic transformation products or both and having the potential to be released, which has indeed been observed. Type II NER are residues that are covalently bound to organic matter in soils or sediments or to biological tissue in organisms and that are considered being strongly bound with very low remobilization rates like that of humic matter degradation rates. Type III NER comprises biogenic NER (bioNER) after degradation of the xenobiotic chemical and anabolic formation of natural biomolecules like amino acids and phospholipids, and other biomass compounds. We developed the microbial turnover to biomass (MTB) model to predict the formation of bioNER based on the structural properties of chemicals. Further, we proposed an extraction sequence to obtain a matrix containing only NER. Finally, we summarized experimental methods to distinguish the three NER types. Type I NER and type II NER should be considered as potentially remobilizable residues in persistence assessment but the probability of type II release is much lower than that of type I NER, i.e., type II NER in soil are “operationally spoken” irreversibly bound and can be released only in minute amounts and at very slow rates, if at all. The potential of remobilization can be evaluated by chemical, physical and biological methods. BioNER are of no environmental concern and, therefore, can be assessed as such in persistence assessment. The general concept presented is to consider the total amount of NER minus potential bioNER as the amount of xenoNER, type I?+?II. If a clear differentiation of type I and type II is possible, for the calculation of half-life type I NER are considered as not degraded parent substance or transformation product(s). On the contrary, type II NER may generally be considered as (at least temporarily) removed. Providing proof for type II NER is the most critical issue in NER assessment and requires additional research. If no characterization and additional information on NER are available, it is recommended to assess the total amount as potentially remobilizable. We propose our unified approach of NER characterization and evaluation to be implemented into the persistence and environmental hazard assessment strategies for REACH chemicals and biocides, human and veterinary pharmaceuticals, and pesticides, irrespective of the different regulatory frameworks.     

Evidence of nitrification and denitrification in high and low microbial abundance sponges

Aerobic and anaerobic microbial key processes were quantified and compared to microbial numbers and morphological structure in Mediterranean sponges. Direct counts on histological sections stained with DAPI showed that sponges with high microbial abundances (HMA sponges) have a denser morphological structure with a reduced aquiferous system compared to low microbial abundance (LMA) sponges. In Dysidea avara, the LMA sponge, rates of nitrification and denitrification were higher than in the HMA sponge Chondrosia reniformis, while anaerobic ammonium oxidation and sulfate reduction were below detection in both species. This study shows that LMA sponges may host physiologically similar microbes with comparable or even higher metabolic rates than HMA sponges, and that anaerobic processes such as denitrification can be found both in HMA and LMA sponges. A higher concentration of microorganisms in the mesohyl of HMA compared to LMA sponges may indicate a stronger retention of and, hence, a possible benefit from associated microbes.     

Effects of an Experimental Enrichment of Instream Habitat Heterogeneity on the Stream Bed Morphology and Chironomid Community of a Straightened Section in a Sandy Lowland Stream

A straightened stream stretch with poor habitat heterogeneity was divided into a “control” section with a low amount of submerged woody debris and an experimentally “wood-enriched” downstream section to study the effect of enhanced habitat diversity on the benthic invertebrate community. The downstream section was enriched by fixing 25 wood packages constructed from 9–10 branches on the stream bottom. Succession processes occurring in the two stream sections were compared by chironomid exuviae drift from July to November 2000 and from April to August 2001. During the first sampling period, more drifting chironomid exuviae (medians of control vs. wood-enriched: 446 vs. 331, no significant difference) and total number of taxa (44 vs. 36, Wilcoxon signed-rank test P = 0.019) were recorded for the control section. Although species compositions of both stream sections were highly similar (Sørensen index: 0.83) the diversity in the wood-enriched section was distinctly lower compared to the control section (Shannon–Weaver index: 1.19 vs. 1.50). During the second sampling period, exuviae numbers remained higher in the control section (median: 326 vs. 166), but total numbers of taxa were nearly equal (51 vs. 49), as well as species diversity (Shannon–Weaver index: 1.67 vs. 1.64). The lower chironomid diversity observed during the first sampling period coincided with a gradual but significant change of the streambed morphology in the wood-enriched section. There, the initially more U-shaped profile (V/U = 0.81 ± 0.37) had turned into a pronounced V shape (V/U = 1.14 ± 0.21), whereas the control section retained its unaltered U shape (V/U = 0.62–0.75). This small-scale study on experimental of woody debris in sandy lowland streams showed that the negative impact of increased hydraulic disturbance of the existing streambed more than outweighed any positive impact resulting from the increase in woody debris.