Stable nitrogen isotope ratio in wood substrates and xylotrophic fungi in forest ecosystems of Western Siberia

It has been shown that wood substrates are the main source of nitrogen for xylotrophic fungi, which have almost the same isotopic signature as their substrate. This fact and a strong positive correlation in nitrogen isotope composition between the substrates and fungi provide evidence for a closed type of nitrogen turnover in the wood-fungus system that is based on retention and repeated utilization of this element. Its isotope composition in the fungi depends on that in the substrate, which is enriched in the heavy isotope in deciduous wood and in the light isotope in coniferous wood. The nitrogen isotope composition in the fungi and wood substrates does not depend on the degree of wood mineralization or climatic conditions, and δ¹⁵N is not an indicator of fungal physiological activity or wood decomposition rate but rather a marker of the isotopic composition of nitrogen sources for the fungi.     

Change in a butterfly community on a gradually overgrowing site

Monitoring of day-active butterflies by water pan traps method over the period 2001–2012 was conducted on a gradually overgrowing habitat in Ko?ick? kotlina basin (Slovakia). Totally, 1457 individuals of 57 species of butterflies were caught and evaluated. Monitoring revealed significant changes in the butterfly community which might be a consequence of a gradual overgrown of the study area. During the research, 12 butterfly species have disappeared from the study area. The monitoring provided results which point to the necessity of appropriate management for conservation of rare and protected butterfly species.     

Listeria monocytogenes batch culture growth response to metabolic inhibitors

In certain environments nutrient and energy sources available to microorganisms can be limited. Foodborne pathogens must efficiently adapt in order to be successfully transmitted through the food chain to their hosts. For the intracellular foodborne pathogen Listeria monocytogenes, little is known regarding its response to nutrient/energy-limiting conditions. The alternative stress responsive sigma factor σ^B has been reported to contribute to survival under specific stresses. Therefore, the effects of several metabolic inhibitors on growth of L. monocytogenes wild-type and a ΔsigB mutant were examined. In the absence of inhibitors, both strains reached stationary phase after 18 h at 23°C and 10 h at 37°C. All of the metabolic inhibitors slowed growth of either strain, with few differences observed among the different inhibitors.     

Abundance of denitrification genes under different peizometer depths in four Irish agricultural groundwater sites

This study examined the relationship between the abundance of bacterial denitrifiers in groundwater at four sites, differing with respect to overlaying land management and peizometer depth. Groundwater was sourced from 36 multilevel piezometers, which were installed to target different groundwater zones: (1) subsoil, (2) subsoil to bedrock interface, and (3) bedrock. The gene copy concentrations (GCCs), as gene copies per liter, for bacterial 16S rRNA genes and the denitrifying functional genes, nirK, nirS, and nosZ, were determined using quantitative polymerase chain reaction assays. The results were related to gaseous nitrogen emissions and to the physicochemical properties of the four sites. Overall, nirK and nirS abundance appeared to show no significant correlation to N₂O production (P?=?0.9989; P?=?0.3188); and no significant correlation was observed between nosZ and excess N₂ concentrations (P?=?0.0793). In the majority of piezometers investigated, the variation of nirK and nirS gene copy concentrations was considered significant (P?<?0.0001). Dissolved organic carbon (DOC) decreased with aquifer depth and ranged from 1.0–4.0 mg l^?1, 0.9–2.4 mg l^?1, and 0.8–2.4 mg l^?1 within piezometers located in the subsoil, subsoil/bedrock interface, and bedrock depths, respectively. The availability of increasing DOC and the depth of the water table were positively correlated with increasing nir and nosZ GCCs (P?=?0.0012). A significant temporal correlation was noted between nirS and piezometer depth (P?<?0.001). Interestingly, the nirK, nirS, and nosZ GCCs varied between piezometer depths within specific sites, while GCCs remained relatively constant from site to site, thus indicating no direct impact of agricultural land management strategies investigated on denitrifier abundance.     

Chemical amendment of pig slurry: control of runoff related risks due to episodic rainfall events up to 48 h after application

Losses of phosphorus (P) from soil and slurry during episodic rainfall events can contribute to eutrophication of surface water. However, chemical amendments have the potential to decrease P and suspended solids (SS) losses from land application of slurry. Current legislation attempts to avoid losses to a water body by prohibiting slurry spreading when heavy rainfall is forecast within 48 h. Therefore, in some climatic regions, slurry spreading opportunities may be limited. The current study examined the impact of three time intervals (TIs; 12, 24 and 48 h) between pig slurry application and simulated rainfall with an intensity of 11.0?±?0.59 mm h^?1. Intact grassed soil samples, 1 m long, 0.225 m wide and 0.05 m deep, were placed in runoff boxes and pig slurry or amended pig slurry was applied to the soil surface. The amendments examined were: (1) commercial-grade liquid alum (8 % Al₂O₃) applied at a rate of 0.88:1 [Al/ total phosphorus (TP)], (2) commercial-grade liquid ferric chloride (38 % FeCl₃) applied at a rate of 0.89:1 [Fe/TP] and (3) commercial-grade liquid poly-aluminium chloride (10 % Al₂O₃) applied at a rate of 0.72:1 [Al/TP]. Results showed that an increased TI between slurry application and rainfall led to decreased P and SS losses in runoff, confirming that the prohibition of land-spreading slurry if heavy rain is forecast in the next 48 h is justified. Averaged over the three TIs, the addition of amendment reduced all types of P losses to concentrations significantly different (p?<?0.05) to those from unamended slurry, with no significant difference between treatments. Losses from amended slurry with a TI of 12 h were less than from unamended slurry with a TI of 48 h, indicating that chemical amendment of slurry may be more effective at ameliorating P loss in runoff than current TI-based legislation. Due to the high cost of amendments, their incorporation into existing management practices can only be justified on a targeted basis where inherent soil characteristics deem their usage suitable to receive amended slurry.     

Determination of C(5)-C(12) perfluoroalkyl carboxylic acids in river water samples in the Czech Republic by GC-MS after SPE preconcentration

A method employing solid phase extraction followed by gas chromatography-mass spectrometry with negative chemical ionization has been developed for determination of ultratrace concentrations of perfluoroalkyl carboxylic acids in river water. The effects of the experimental parameters, such as the pH, additions of NaCl and an ion-pairing agent (tetraethylammonium bromide) and the kind of the elution agent, on the efficiency of the test acid extraction have been studied. The analyte extraction recoveries and the limits of detection and determination have been found. The method developed has been tested on determinations of perfluoroalkyl carboxylic acids in the waters of the two largest Czech rivers, Vltava and Labe (Elbe). The best extraction results have been attained without any alteration of the sample pH, with an addition of tetrabutylammonium bromide (a concentration of 50 μg mL⁻¹ in the sample) and using methanol as the elution agent. Under these conditions, the recoveries of the test acids in the spiked real samples are within ranges from 60% to 104% and 53% to 111% for analyte concentration levels of 1.40 ng mL⁻¹ and 0.14 ng mL⁻¹, respectively, depending on the lengths of the perfluorinated chains of the acids. In general, the recovery decreases with increasing length of this chain. The method developed exhibits very low limits of detection and determination and the results are fully comparable with those obtained when using more expensive HPLC-MS/MS instrumentation. Typical values amount to tenths to tens of pg mL⁻¹ and units to one hundred pg mL⁻¹ for the limits of detection and determination, respectively; the measuring sensitivity increases with increasing length of the analyte chain. The analyzes of real samples from the Vltava and Elbe rivers have demonstrated that the results obtained are similar to the values published for contamination of the Elbe and other rivers in western and central Europe. The concentrations determined are of the order of units to tens of pg mL⁻¹ and the C₈-C₁₀ acids occur most often.     

BRC4Env,a network of Biological Resource Centres for research in environmental and agricultural sciences

The Biological Resource Centre for the Environment BRC4Env is a network of Biological Resource Centres (BRCs) and collections whose leading objectives are to improve the visibility of genetic and biological resources maintained by its BRCs and collections and to facilitate their use by a large research community, from agriculture research to life sciences and environmental sciences. Its added value relies on sharing skills, harmonizing practices, triggering projects in comparative biology, and ultimately proposing a single-entry portal to facilitate access to documented samples, taking into account the partnership policies of research institutions as well as the legal frame which varies with the biological nature of resources. BRC4Env currently includes three BRCs: the Centre for Soil Genetic Resources of the platform GenoSol, in partnership with the European Conservatory of Soil Samples; the Egg Parasitoids Collection (EP-Coll); and the collection of ichthyological samples, Colisa. BRC4Env is also associated to several biological collections: microbial consortia (entomopathogenic bacteria, freshwater microalgae…), terrestrial arthropods, nematodes (plant parasitic, entomopathogenic, animal parasitic...), and small mammals. The BRCs and collections of BRC4Env are involved in partnership with academic scientists, as well as private companies, in the fields of medicinal mining, biocontrol, sustainable agriculture, and additional sectors. Moreover, the staff of the BRCs is involved in many training courses for students from French licence degree to Ph.D, engineers, as well as ongoing training.     

Climate change impacts detection in dry forested ecosystem as indicated by vegetation cover change in —Laikipia,of Kenya

The objective of the study was to detect and identify land cover changes in Laikipia County of Kenya that have occurred during the last three decades. The land use types of study area are six, of which three are the main and the other three are the minor. The main three, forest, shrub or bush land and grassland, changed during the period, of which grasslands reduced by 5864 ha (40%), forest by 3071 ha (24%) and shrub and bush land increased by 8912 ha (43%). The other three minor land use types were bare land which had reduced by 238 ha (45%), river bed vegetation increased by 209 ha (72%) and agriculture increased by 52 ha (600%) over the period decades. Differences in spatiotemporal variations of vegetation could be largely attributed to the effects of climate factors, anthropogenic activities and their interactions. Precipitation and temperature have been demonstrated to be the key climate factors for plant growth and vegetation development where rainfall decreased by 200 mm and temperatures increased by 1.5 °C over the period. Also, the opinion of the community on the change of land use and management was attributed to climate change and also adaptation strategies applied by the community over time. For example unlike the common understanding that forest resources utilisation increases with increasing human population, Mukogodo dry forested ecosystem case is different in that the majority of the respondents (78.9%) reported that the forest resource use was more in that period than now and also a similar majority (74.2%) had the same opinion that forest resource utilisation was low compared to last 30 years. In Yaaku community, change impacts were evidenced and thus mitigation measures suggested to address the impacts which included the following: controlled bush management and indigenous grass reseeding programme were advocated to restore original grasslands, and agricultural (crop farming) activities are carried out in designated areas outside the forest conservation areas (ecosystem zoning) all in consultation with government (political class), community and other stakeholders. Groups are organised (environmental management committee) to address conservation, political and vulnerability issues in the pastoral dry forested ecosystem which will sustain pastoralism in the ecosystem.