Hopanoid Biosynthesis and Function in Bacteria

   Hopanoids are pentacyclic triterpenoid lipids occurring in bacteria. They are synthesized from isopentenyl units which are formed in a new biosynthetic route leading to isopentenyl diphosphate. Six C₅ units are joined to form squalene, the immediate precursor in hopanoid synthesis. In a highly complex cyclization reaction that shares considerable similarities with that of oxidosqualene to sterols, the hopane skeleton is formed from squalene by the squalene-hopene cyclase. Recent elucidation of the X-ray structure of this membrane-bound cyclase has shed some light on the properties of this unusual enzyme. The active site is located in a cavity within the enzyme. The squalene substrate diffuses through a channel structure from the membrane into this cavity and is there transformed into hopene. Polar side chains are attached to hopene resulting in the amphiphilic molecular structure of many hopanoids. These hopanoids are membrane components involved in regulating membrane fluidity and stability. However, the many structural variants of hopanoids indicate that they may have other interesting but as yet unknown functions.     

Mitigation and adaptation synergy in forest sector

Mitigation and adaptation are the two main strategies to address climate change. Mitigation and adaptation have been considered separately in the global negotiations as well as literature. There is a realization on the need to explore and promote synergy between mitigation and adaptation while addressing climate change. In this paper, an attempt is made to explore the synergy between mitigation and adaptation by considering forest sector, which on the one hand is projected to be adversely impacted under the projected climate change scenarios and on the other provide opportunities to mitigate climate change. Thus, the potential and need for incorporating adaptation strategies and practices in mitigation projects is presented with a few examples. Firstly, there is a need to ensure that mitigation programs or projects do not increase the vulnerability of forest ecosystems and plantations. Secondly, several adaptation practices could be incorporated into mitigation projects to reduce vulnerability. Further, many of the mitigation projects indeed reduce vulnerability and promote adaptation, for example; forest and biodiversity conservation, protected area management and sustainable forestry. Also, many adaptation options such as urban forestry, soil and water conservation and drought resistant varieties also contribute to mitigation of climate change. Thus, there is need for research and field demonstration of synergy between mitigation and adaptation, so that the cost of addressing climate change impacts can be reduced and co-benefits increased.     

Seven suggestive quantitative trait loci influence hygienic behavior of honey bees

In 1964, Walter Rothenbuhler proposed a two-gene model to explain phenotypic variance in the remarkable behavior in which honey bee workers remove dead brood from their colonies. Rothenbuhler's model proposed that one locus controls the uncapping of brood cells containing dead pupae, while a second controls the removal of the cell contents. We show here, through molecular techniques and quantitative trait loci (QTL) linkage mapping, that the genetic basis of hygienic behavior is more complex, and that many genes are likely to contribute to the behavior. In our cross, we detected seven suggestive QTLs associated with hygienic behavior. Each detected QTL controlled only 9-15% of the observed phenotypic variance in the character.     

Simulating dairy liquid waste management options as a nitrogen source for crops

Large scale dairy operations are common. In many cases the manure is deposited on a paved surface and then removed with a flushing system, after which the solids are separated, the liquid stored in ponds, and eventually the liquid applied on adjacent crop land. Management of liquid manure to maximize the fertilizer value and minimize water quality degradation requires knowledge of the interactive effects of mineralization of organic N (ON) to NH₄⁺, crop uptake of mineral N, and leaching of NO₃⁻ on a temporal basis. The purpose of the research was to use the ENVIRO-GRO model to simulate how the amount of applied N, timing of N application, ON mineralization rates, chemical form of N applied, and irrigation uniformity affected (1) yields of corn (Zea mays) in summer and a forage grass in winter in a Mediterranean climate and (2) the amount of NO₃⁻ leached below the root zone. This management practice is typical for dairies in the San Joaquin Valley of California. The simulations were conducted for a 10-year period. Steady state conditions, whereby an equivalent amount of N applied in the organic form will be mineralized in a given year, are achieved more rapidly for materials with high mineralization rates. Both timing and total quantity of N application are important in affecting crop yield and potential N leaching. Major conclusions from the simulations are as follows. Frequent low applications are preferred to less frequent higher applications. Increasing the amount of N application increased both the crop yield and the amount of NO₃⁻ leached. Increasing irrigation uniformity increased crop yields but had variable effects on the amount of NO₃⁻ leached. A winter forage crop following a summer corn crop effectively reduced the leaching of residual soil N following the corn crop.     

Differential N uptake by maize cultivars and soil nitrate dynamics under N fertilization in West Africa

Nitrate is prone to leaching in the sandy soils of the West African moist savannas. Better management of nitrogen (N) resources and maize cultivars with enhanced genetic capacity to capture and utilize soil and fertilizer N are strategies that could improve N-use efficiency. In two field experiments conducted at Zaria, northern Nigeria, five maize (Zea mays L.) cultivars planted early in the season were assessed under various N levels for differences in N uptake, soil N dynamics, and related N losses. Cultivar TZB-SR accumulated more N in the aboveground plant parts in both years than the other cultivars. All, except the semi-prolific late (SPL) variety, met about 50–60% of their N demand by the time of silking (64–69 DAP). In both years, SPL had the greatest capacity to take up N during the grain filling period, and it had the highest grain-N concentration and the least apparent N loss through leaching in the second year. There were no significant differences in soil N dynamics among cultivars in both years. At harvest, the residual N in the upper 90 cm of the profile under all the cultivars ranged from 56 to 72 kg ha⁻¹ in the first year and from 73 to 83 kg ha⁻¹ in the second year. Apparent N loss from 0 to 90 cm soil profile through leaching ranged from 35 to 122 kg ha⁻¹ in both years. N application significantly increased N uptake by more than 30% at all sampling dates in the second year of the experiment, but had no effect on apparent N loss. Results indicate that the use of maize cultivars with high N uptake capacity during the grain filling period when maximum leaching losses occur could enhance N recovery and may be effective in reducing leaching losses of mineral N in the moist savanna soils.     

Inter and intra-population variation in shoaling and boldness in the zebrafish (<Emphasis Type="Italic">Danio rerio</Emphasis>)

Population differences in anti-predator behaviour have been demonstrated in several species, although less is known about the genetic basis of these traits. To determine the extent of genetic differences in boldness (defined as exploration of a novel object) and shoaling within and between zebrafish (Danio rerio) populations, and to examine the genetic basis of shoaling behaviour in general, we carried out a study that involved laboratory-raised fish derived from four wild-caught populations. Controlling for differences in rearing environment, significant inter-population differences were found in boldness but not shoaling. A larger shoaling experiment was also performed using one of the populations as the basis of a North Carolina type II breeding design (174 fish in total) to estimate heritability of shoaling tendency. A narrow-sense heritability estimate of 0.40 was obtained, with no apparent dominance effects.