Cellular damage of plant pathogenic fungi by antifungal compounds produced by Bacillus spp. isolates

The use of microorganisms as biological control agents (BCAs) has become an effective alternative to chemical means of controlling plant pathogens. The antagonistic and inhibitory activity of 71 Bacillus spp. strains, which were isolated from different Mexican sites, were tested against several phytopathogen fungi, Fusarium oxysporum, Fusarium equiseti, Fusarium avenaceum, Bipolaris spp. and Alternaria spp. From the antagonism study, the strain ELI149 showed a marked inhibition of growth against all tested fungi; therefore crude metabolites from this strain were extracted using ethyl acetate and amberlite resin and probed against the same fungi as well as strains of Mucor sp., Penicillium spp. and Paecilomyces spp. The results indicated that amberlite was more suitable for extraction of secondary metabolites with antifungal activity. Finally, observation of cell damage in the tested pathogenic fungi showed marked morphological changes on reproductive structures in all tested fungi indicating that antibiosis was the mechanism of the antagonistic effect. These results suggest that metabolites from the Bacillus strains have a wide spectrum of antibiotic activities, which can be used as biocontrol agents for controlling fungal plant diseases of agricultural importance.     

Vertical growth in a coastal city: an analysis of Boa Viagem (Recife,Brazil)

Coastal zones around the world have experienced urban growth in the last 50 years. This landscape change brings new aspects for those zones and the environment. Real estate speculation is a decisive factor that changes landscape, with urban growth that occurs both in the extent and volume of construction. Boa Viagem (BV) beach at Recife, Northeast Brazil was just a sand bar covered by an Atlantic Forest until middle of the 1800s. Today, it has turned into a busy area of the city where residences, services and commerce co-exist in a densely packed arrangement. This work demonstrates and analyses vertical growth in BV and urban changes from 1961 to 2011. It was developed using digital image processing and visual analysis of satellite imagery and aerial photos. A GIS was created using SPRING and ArcScene, to calculate variations in area and volume creating a Volumetric Index (VI). The Minimal Mapping Area was used in sixteen census tract as samples of the area. Occupation and vertical growth were especially accentuated from 1981 to 1996 with the peak at 2011. Increases in vertical growth from shore to inland are evident in all parts of the district. This finding was confirmed by three-dimensional GIS representations of the study area and the VI during the period of this work, showing the potential of 3D GIS models for studying dense urbanization areas in coastal zones.     

Simulations of the flow in the Mahakam river–lake–delta system,Indonesia

Large rivers often present a river–lake–delta system, with a wide range of temporal and spatial scales of the flow due to the combined effects of human activities and various natural factors, e.g., river discharge, tides, climatic variability, droughts, floods. Numerical models that allow for simulating the flow in these river–lake–delta systems are essential to study them and predict their evolution under the impact of various forcings. This is because they provide information that cannot be easily measured with sufficient temporal and spatial detail. In this study, we combine one-dimensional sectional-averaged (1D) and two-dimensional depth-averaged (2D) models, in the framework of the finite element model SLIM, to simulate the flow in the Mahakam river–lake–delta system (Indonesia). The 1D model representing the Mahakam River and four tributaries is coupled to the 2D unstructured mesh model implemented on the Mahakam Delta, the adjacent Makassar Strait, and three lakes in the central part of the river catchment. Using observations of water elevation at five stations, the bottom friction for river and tributaries, lakes, delta, and adjacent coastal zone is calibrated. Next, the model is validated using another period of observations of water elevation, flow velocity, and water discharge at various stations. Several criteria are implemented to assess the quality of the simulations, and a good agreement between simulations and observations is achieved in both calibration and validation stages. Different aspects of the flow, i.e., the division of water at two bifurcations in the delta, the effects of the lakes on the flow in the lower part of the system, the area of tidal propagation, are also quantified and discussed.     

Vacuum promotes metabolic shifts and increases biogenic hydrogen production in dark fermentation systems

The successful operation of any type of hydrogen-producing bioreactor depends on the performance of the microorganisms present in the system. Both substrate and partial gas pressures are crucial factors affecting dark fermentation metabolic pathways. The main objective of this study was to evaluate the impact of both factors on hydrogen production using anaerobic granular sludge as inoculum and, secondly, to study the metabolic shifts of an anaerobic community subjected to low partial gas pressures. With this goal in mind, seven different wastewater (four synthetic media, two industrial wastewater, and one domestic effluent) and the effect of applying vacuum on the systems were analyzed. The application of vacuum promoted an increase in the diversity of hydrogenproducing bacteria, such as Clostridium, and promoted the dominance of acetoclastic- over hydrogenotrophic methanogens. The application of different media promoted a wide variety of metabolic pathways. Nevertheless, reduction of the hydrogen partial pressure by application of vacuum lead to further oxidation of reaction intermediates irrespective of the medium used, which resulted in higher hydrogen and methane production, and improved the COD removal. Interestingly, vacuum greatly promoted biogenic hydrogen production from a real wastewater, which opens possibilities for future application of dark fermentation systems to enhance biohydrogen yields.     

Rapid changes in growth,condition, size and age of small pelagic fish in the Mediterranean

Since 2007, the ecosystem of the Gulf of Lions has shifted to a different regime, characterised by a low anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus) biomass and a remarkably high sprat (Sprattus sprattus) biomass. Surprisingly, the abundance and recruitment of anchovy and sardine remained high. To understand which processes (bottom-up or top-down control, etc.) could have caused this shift, we studied the changes in body condition, growth and size and age of anchovy, sardine and sprat over 1984–1985 and 1992–2012, using data from scientific surveys. The annual age structure of anchovy and sardine was estimated using Bayesian mixture models based on size frequency data with priors on the age–length relationship derived from independent otolith readings. The results indicated periods during which anchovy and sardine were in an average (1992–2004), good (2005–2007) or poor (2008–2012) overall state of condition. For sardine, the shift towards smaller fish observed during these past 4 years was explained by a combination of slower growth and the disappearance of older individuals (ages 2+). Despite the increase in biomass of sprat since 2008, indications were found that sprat was also smaller than in the past. As growth and condition decreased and overexploitation has not been documented or suspected for those three species in this area, we propose that the current decline in sardine and anchovy biomass could be due to qualitative and/or quantitative modifications in the planktonic production (i.e. a bottom-up control) or mass mortalities of adults due to an epidemic disease.     

Relative contribution of dietary carotenoids and vitamin E to visual and chemical sexual signals of male Iberian green lizards: an experimental test

Carotenoid-based sexual ornaments are widespread, but the role of carotenoids as honest signalers in the trade-off between coloration and antioxidant protection remains controversial. It has been suggested that the function of carotenoids might not be an antioxidant per se, but that colorful carotenoids may indirectly reflect the levels of nonpigmentary antioxidants, such as melatonin or vitamin E. We experimentally fed male Iberian green lizards (Lacerta schreiberi) additional carotenoids or vitamin E alone, or a combination of carotenoids and vitamin E dissolved in soybean oil, whereas a control group only received soybean oil. We examined the effects of the dietary supplementations on characteristics of lizard sexual coloration and of the chemical profile of femoral gland secretions. Results indicated that both carotenoids and vitamin E in the diet increased the expression of some visual signals (head and chest, but not dorsum) in comparison to controls. However, different traits were differentially affected, and in many cases, the addition of vitamin E, alone or in combination with carotenoids, had a greater effect on the expression of coloration than the addition of carotenoids alone, even for carotenoid-dependent ornaments. Our results support the idea that other nonpigmentary antioxidants, such as vitamin E, are needed in addition to carotenoids to increase the expression of coloration of L. schreiberi lizards. Therefore, coloration may only indirectly reflect the levels of nonpigmentary antioxidants. In contrast, an increase in dietary nonpigmentary antioxidant vitamin E was directly reflected in the chemical signals. Because of an observed concordance between visual and chemical signals, we suggest that both may be used in different contexts albeit conveying similar messages in different sensory channels.     

Food allocation rules vary with age and experience in a cooperatively breeding parrot

Although it is known that parents can differ in their optimal resource allocation to offspring in size-structured broods, the mechanisms determining differences in allocation rules of carers are not yet clarified. In cooperatively breeding species, breeders and non-reproductive helpers often differ in their fitness payoffs of providing care and in their breeding experience. Cooperative breeders thus provide an appropriate system to examine two hypotheses originally proposed to explain differences in food allocation among parents: (i) food allocation between carers differs because of the distinct cost-benefit ratio of selective feeding (i.e. breeders and helpers are expected to differ in food allocation) and (ii) carers differ in their ability to feed selectively (i.e. differences in food allocation are expected between experienced adults and inexperienced yearlings). We compared feeding rates with which breeders, old helpers and yearling helpers provisioned nestlings of different hatching rank. The influence of experience upon food allocation was further assessed by comparing food allocation of yearlings early and late during nesting. We show that allocation rules differ between age classes because breeders and old helpers fed the youngest chicks most, whereas yearlings showed the opposite pattern. The role of experience was supported by the fact that yearlings adjusted food allocation to that observed in experienced adults during the breeding season. We thus suggest that food allocation in El Oro parakeets depends either on differential skills of adults to transfer food to the youngest chick or on their ability to recognize nestling needs.     

Seeding phenology influences wood mouse seed choices: the overlooked role of timing in the foraging decisions by seed-dispersing rodents

Scatter-hoarding rodents influence the population dynamics of plants by acting as seed predators and dispersers. Therefore, rodent foraging preferences for certain seed traits (species, size, condition) have been extensively studied. However, to what extent these preferences are fixed or they track the temporal changes on seed characteristics due to phenological differences has been seldom explored. We studied the temporal variability in seed preferences by wood mouse (Apodemus sylvaticus), according to phenological changes in seed characteristics of two co-occurring oaks (Quercus ilex and Quercus pubescens). The phenology of acorn abundance and the acorn predation/dispersal patterns by rodents were monitored over an entire seeding season. Results revealed temporal changes in rodent preferences for acorns of the two oaks, matching their different seeding phenology (earlier in Q. pubescens and later in Q. ilex). On the other hand, whatever the species considered, rodents preferred larger and sound acorns along the entire season, although the dispersal of infested ones increased slightly during the peaks of acorn drop. The observed influence of seeding phenology on seed choices by rodents warns about inferring definite conclusions regarding their foraging behavior when arising from short-term experiments. Indeed, this study reveals that foraging preferences may be highly dynamic and context-dependent for some seed traits (e.g., species and condition), rather than fixed behavioral patterns. Plasticity in rodent foraging choices may allow them to successfully exploit different oaks with uncoupled seeding phenologies, while potentially favoring their coexistence.