Habitat,movements and environmental preferences of dusky sharks,Carcharhinus obscurus,in the northern Gulf of Mexico

The dusky shark (Carcharhinus obscurus) is the largest member of the genus Carcharhinus and inhabits coastal and pelagic ecosystems circumglobally in temperate, subtropical and tropical marine waters. In the western North Atlantic Ocean (WNA), dusky sharks are overfished and considered vulnerable by the International Union for the Conservation of Nature. As a result, retention of dusky sharks in commercial and recreational fisheries off the east coast of the United States (US) and in the northern Gulf of Mexico is prohibited. Despite the concerns regarding the status of dusky sharks in the WNA, little is known about their habitat utilization. During the summers of 2008–2009, pop-up satellite archival tags were attached to ten dusky sharks (one male, nine females) at a location where they have been observed to aggregate in the north central Gulf of Mexico southwest of the Mississippi River Delta to examine their movement patterns and habitat utilization. All tags successfully transmitted data with deployment durations ranging from 6 to 124 days. Tag data revealed shark movements in excess of 200 km from initial tagging locations, with sharks primarily utilizing offshore waters associated with the continental shelf edge from Desoto Canyon to the Texas/Mexican border. While most sharks remained in US waters, one individual moved from the northern Gulf of Mexico into the Bay of Campeche off the coast of Mexico. Sharks spent 87 % of their time between 20 and 125 m and 83 % of their time in waters between 23 and 30 °C. Since dusky sharks are among the most vulnerable shark species to fishing mortality, there is a recovery plan in place for US waters; however, since they have been shown to make long-distance migrations, a multi-national management plan within the WNA may be needed to ensure the successful recovery of this population.     

Different tactics,one goal: initial reproductive investments of males and females in a small Arctic seabird

Despite a great number of studies on extra-pair paternity in birds, the actual roles of males and females in extra-pair contacts is poorly understood, as detailed behavioural studies comparing the reproductive performance of the two sexes prior to egg laying are relatively scarce. Here, we investigated mating behaviour (copulations and aggressive interactions), time budget and body condition (size-adjusted body mass and baseline corticosterone level) in the little auk (Alle alle), a monogamous and highly colonial, Arctic seabird. We performed the study in a large breeding colony of the little auk in Hornsund (Spitsbergen). We found that the males frequently attempted extra-pair copulations (EPCs), although these contacts were almost always unsuccessful, mostly because of the females’ rejection behaviour. These results clearly indicate that genetic monogamy is maintained through female control. Nevertheless, males tried to protect their paternity by staying in close proximity to their females and aggressively intervening when their mates became involved in EPCs. Compared to females, males also spent more time in the colony guarding nest sites. Despite the apparent sex differences in the time budget and frequency of aggressive interactions, body condition was similar in the two sexes, indicating comparable parental investments during the mating period.     

Distributional patterns of adult male loggerhead sea turtles (<Emphasis Type="Italic">Caretta caretta</Emphasis>) in the vicinity of Cape Canaveral,Florida, USA during and after a major annual breeding aggregation

Satellite transmitters were attached to 25 reproductively active and four inactive adult male loggerhead sea turtles (86.6–107.0 cm SCLmin) captured from the Port Canaveral, FL, USA shipping channel to assess horizontal and vertical distributions. During the breeding period, male loggerheads aggregated (44% of 755 turtle days) in a 117.6 km² core area that encompassed the shipping channel. Median dive duration during the breeding period was 27 min (IQR = 15–42 min) and males spent 4% (IQR = 3–5%) of the time at the surface, with significantly shorter dives associated with reproductively active males. Migrant and resident males dispersed concurrently, with residents shifting > 30 km east across the continental shelf over a more protracted departure schedule than migrants. Dive duration and time spent at the surface increased through the fall. Cluster analysis revealed the strongest association for dive duration with sea state during and after the breeding period, with significantly longer dives during more turbulent conditions. In contrast, univariate associations with surface interval duration were not elucidated.     

Granulation of anammox microorganisms for autotrophic nitrogen removal from wastewater

Excessive discharge of nutrients in waters induces pollution such as such as eutrophication. Conventional methods to treat waters are expensive. Alternatively, anaerobic ammonium oxidation, termed “anammox”, has been recently developped with benefits such as low sludge production, 50% less aeration demand, no external carbon supply, 60% less power consumption, and 90% reduction of greenhouse gas emissions. However, anammox is limited by long start-up periods due to the low growth rate of anammox bacteria. This issue can be solved by complete retention of biomass by reactor modification or by formation of anammox granules. This article reviews the mechanisms of anammox granulation and biogranulation models. We present factors involved in the granulation processes such as hydrodynamic shear force, extracellular polymeric substances, hydraulic retention time, seed sludge and bioreactors. We also discuss the interaction of proteins and polysaccharides in anammox granules.     

Submesoscale distribution of Antarctic krill and its avian and pinniped predators before and after a near gale

We conducted two ship-based surveys of the nearshore ecosystem north of Livingston Island, Antarctica during 2–10 February 2005. Between the two surveys, a low-pressure system (963 mbar) passed through the area providing the opportunity to measure ecosystem parameters before and after a near gale. A ship-based multiple-frequency acoustic-backscatter survey was used to assess the distribution and relative abundance of Antarctic krill (Euphausia superba). Net tows, hydrographic profiles, and meteorological data were collected to measure biological and physical processes that might affect the krill population. During the survey, the distribution and behavior of several krill predators [chinstrap penguins (Pygoscelis antarctica), cape petrels (Daption capense), and Antarctic fur seals (Arctocephalus gazella)] were measured from the vessel by visual observations. The survey encompassed an area of roughly 2,500 km², containing two submarine canyons with one to the west and one to the east of Cape Shirreff, which had different abundances of krill and predators. Several aspects of the nearshore ecosystem changed after the near gale including: hydrography of the upper 100 m of the water column, phytoplankton biomass, the abundance and distribution of krill, and the distribution of some krill predators. Differences in these parameters were also measured between the two canyons. These changes in the physical and biological environment during the survey period are quantified and show that the ecosystem exhibited significant changes over relatively short spatial (tens of kilometers) and time (tens of hours) scales.     

Response of balanced network models to large-scale perturbation: Implications for evaluating the role of small pelagics in the Gulf of Maine

Exploring the response of an ecosystem, and subsequent tradeoffs among its biological community, to human perturbations remains a key challenge for the implementation of an ecosystem approaches to fisheries (EAF). To address this and related issues, we developed two network (or energy budget) models, Ecopath and Econetwrk, for the Gulf of Maine ecosystem. These models included 31 network “nodes” or biomass state variables across a broad range of trophic levels, with the present emphasis to particularly elucidate the role of small pelagics. After initial network balancing, various perturbation scenarios were evaluated to explore how potential changes to different fish, fisheries and lower trophic levels can affect model outputs. Categorically across all scenarios and interpretations thereof, there was minimal change at the second trophic levels and most of the “rebalancing” after a perturbation occurred via alteration of the diet matrix. Yet the model results from perturbations to a balanced energy budget fall into one of three categories. First, some model results were intuitive and in obvious agreement with established ecological and fishing theory. Second, some model results were counter-intuitive upon initial observation, seemingly contradictory to known ecological and fishing theory; but upon further examination the results were explainable given the constraints of an equilibrium energy budget. Finally, some results were counter-intuitive and difficult to reconcile with theory or further examination of equilibrium constraints. A detailed accounting of biomass flows for example scenarios explores some of the non-intuitive results more rigorously. Collectively these results imply a need to carefully track biomass flows and results of any given perturbation and to critically evaluate the conditions under which a new equilibrium is obtained for these types of models, which has implications for dynamic simulations based off of them. Given these caveats, the role of small pelagics as a prominent component of this ecosystem remains a robust conclusion. We discuss how one might use this approach in the context of further developing an EAF, recognizing that a more holistic, integrated perspective will be required as we continue to evaluate tradeoffs among marine biological communities.     

Polynomial Surrogates for Open-Channel Flows in Random Steady State

Assessing epistemic uncertainties is considered as a milestone for improving numerical predictions of a dynamical system. In hydrodynamics, uncertainties in input parameters translate into uncertainties in simulated water levels through the shallow water equations. We investigate the ability of generalized polynomial chaos (gPC) surrogate to evaluate the probabilistic features of water level simulated by a 1-D hydraulic model (MASCARET) with the same accuracy as a classical Monte Carlo method but at a reduced computational cost. This study highlights that the water level probability density function and covariance matrix are better estimated with the polynomial surrogate model than with a Monte Carlo approach on the forward model given a limited budget of MASCARET evaluations. The gPC-surrogate performance is first assessed on an idealized channel with uniform geometry and then applied on the more realistic case of the Garonne River (France) for which a global sensitivity analysis using sparse least-angle regression was performed to reduce the size of the stochastic problem. For both cases, Galerkin projection approximation coupled to Gaussian quadrature that involves a limited number of forward model evaluations is compared with least-square regression for computing the coefficients when the surrogate is parameterized with respect to the local friction coefficient and the upstream discharge. The results showed that a gPC-surrogate with total polynomial degree equal to 6 requiring 49 forward model evaluations is sufficient to represent the water level distribution (in the sense of the \(\ell _2\) norm), the probability density function and the water level covariance matrix for further use in the framework of data assimilation. In locations where the flow dynamics is more complex due to bathymetry, a higher polynomial degree is needed to retrieve the water level distribution. The use of a surrogate is thus a promising strategy for uncertainty quantification studies in open-channel flows and should be extended to unsteady flows. It also paves the way toward cost-effective ensemble-based data assimilation for flood forecasting and water resource management.     

Organic pollutants in compost and digestate. Part 1. Polychlorinated biphenyls, polycyclic aromatic hydrocarbons and molecular markers

In Europe, 9.3 x 10(6) t(dry weight (dw)) of compost and digestate are produced per year. Most of this is applied to agricultural land, which can lead to considerable inputs of organic pollutants, such as polychlorinated biphenyls (PCB) and polycyclic aromatic hydrocarbons (PAH) to soil. This paper presents an inventory of the pollutant situation in source-separated composts, digestates and presswater in Switzerland by a detailed analysis of over 70 samples. PCB concentrations ( summation PCB 28, 52, 101, 118, 138, 153, 180) were significantly higher in urban (median: 30 microg kg(-1)dw, n = 52) than in rural samples (median: 14 microg kg(-1)dw, n = 16). Together with low concentrations in general, this points to aerial deposition on compost input material as the major contamination pathway. Enantiomeric fractions of atropisometric PCB were close to racemic. Median PAH concentration was 3010 microg kg(-1)dw( summation 15PAH, n = 69), and one quarter of the samples exhibited concentrations above the relevant Swiss guide value for compost (4000 microg kg(-1)dw). The levels were influenced by the treatment process (digestate > compost), the season of input material collection (spring-summer > winter > autumn), the particle size (coarse-grained > fine-grained), and maturity (mature > less mature). The main source of PAH in compost was pyrogenic, probably influenced mainly by liquid fossil fuel combustion and some asphalt abrasion, as suggested by multiple linear regression. This study, together with a companion paper reporting on other organic contaminates including emerging compound classes, provides a starting point for a better risk-benefit estimation of the application of compost and digestate to agricultural soil in Switzerland.