DNA Heat Treatment for Improving qPCR Analysis of Human Adenovirus in Wastewater

PCR inhibitory substances in complex sample matrices can cause false negatives or under-estimation of target concentration. This study assessed DNA heat treatment for reducing inhibition during qPCR analysis of human adenovirus (HAdV) in wastewater samples. Inhibition was reduced by heat treating DNA, where mean HAdV concentration was increased by 0.71 log₁₀ GC/L (and up to 3.04 log₁₀ GC/L in one case), and replicate variability and false negatives were reduced. DNA heat treatment should be further investigated for improving reliability of HAdV concentration estimates in water, which can support more accurate assessment of health risks associated with viral pathogen exposure.     

Assessment and Evaluation of an Integrated Hybrid Anaerobic–Aerobic Sewage Treatment System for the Removal of Enteric Viruses

The capability of a cost-effective and a small size decentralized pilot wastewater treatment plant (WWTP) to remove enteric viruses such as rotavirus, norovirus genogroup I (GGI), norovirus genogroup II (GGII), Hepatitis E virus (HEV), and adenovirus was studied. This pilot plant is an integrated hybrid anaerobic/aerobic setup which consisted of anaerobic sludge blanket (UASB), biological aerated filter (BAF), and inclined plate settler (IPS). Both the UASB and BAF are packed with a non-woven polyester fabric (NWPF). Results indicated that the overall log₁₀ reductions of enteric viruses’ genome copies through the whole system were 3.1 ± 1, 3.3 ± 0.5, and 2.6 ± 0.9 log₁₀ for rotavirus, norovirus GGI, and adenovirus, respectively. Reduction efficiency for both norovirus GGII and HEV after the different treatment steps could not be calculated because there were no significant numbers of positive samples for both viruses. The overall reduction of rotavirus infectious units through the whole system was 2.2 ± 0.8 log₁₀ reduction which is very close to the overall log₁₀ reduction of adenovirus infectious units through the whole system which was 2.1 ± 0.8 log₁₀ reduction. There was no considerable difference in the removal efficiency for different rotavirus G and P types. Adenovirus 41 was the only type detected in the all positive samples. Although the pilot WWTP investigated is cost effective, has a small footprint, does not need a long distance network pipes, and easy to operate, its efficiency to remove enteric viruses is comparable with the conventional centralized WWTPs.     

镧-铅复合污染下AM真菌对玉米生长和镧、铅吸收的影响

采用温室盆栽试验的方法,模拟不同程度的镧-铅复合污染土壤(50、200、800 mg·kg~(-1)),研究接种丛枝菌根(arbuscular mycorrhizal,AM)、真菌Claroideoglomus etunicatum(CE)和Rhizophagus intraradices(RI)对玉米(Zea mays L.)菌根侵染率、生物量、矿质营养元素吸收、C∶N∶P生态化学计量比、稀土镧(La)和重金属铅(Pb)吸收、转运的影响,旨在为稀土-重金属复合污染土壤的治理和修复提供科学依据.结果表明,AM真菌CE和RI均与玉米建立了共生关系,平均菌根侵染率为26.7%~95.8%;随着La-Pb复合污染含量的增加,玉米植株菌根侵染率、地上部和根部生物量以及N、P、K、Ca、Mg这5种矿质营养元素含量显著降低,而玉米植株C∶P和N∶P以及地上部和根部La、Pb含量显著增加.接种2种AM真菌使玉米植株生物量显著提高了17.8%~158.9%,地上部和根部P含量显著提高了24.5%~153.8%,降低了C∶P和N∶P,符合生长速率假设.在3种程度La-Pb复合污染含量土壤上,AM真菌使玉米植株根部Pb含量显著增加了51.3%~67.7%,地上部Pb含量显著降低了16.0%~67.7%,Pb从玉米根部向地上部的转运率降低了31.5%~54.7%;同时,接种AM真菌显著增加了轻度LaPb复合污染土壤上玉米植株的La含量,在中度La-Pb复合污染土壤上却显著减少了玉米地上部的La含量,增加了玉米根部的La含量,抑制了La从根部向地上部的转运,重度La-Pb复合污染土壤上均没有显著影响.试验结果初步证明,AM真菌具有促进稀土-重金属复合污染土壤植物修复的潜力,对于稀土-重金属复合污染土壤生态系统的植被恢复具有潜在应用价值.     

Effects of exotic fish farms on bird communities in lake and marine ecosystems

Salmon farming is a widespread activity around the world, also known to promote diverse environmental effects on aquatic ecosystems. However, information regarding the impact of salmon farming on bird assemblages is notably scarce. We hypothesize that salmon farming, by providing food subsidies and physical structures to birds, will change their local community structure. To test this hypothesis, we conducted a seasonal monitoring of bird richness, abundance, and composition at paired salmon pen and control plots in two marine and two lake sites in southern Chile, from fall 2002 to summer 2004. Overall, salmon farming had no significant effects on species richness, but bird abundance was significantly and noticeably higher in salmon pens than in controls. Such aggregation was mainly accounted for by the trophic guilds of omnivores, diving piscivores, carrion eaters, and perching piscivores, but not by invertebrate feeders, herbivores, and surface feeders. Species composition was also significantly and persistently different between salmon pens and controls within each lake or marine locality. The patterns described above remained consistent across environment types and seasons indicating that salmon farming is changing the community structure of birds in both lake and marine habitats by promoting functional and aggregation responses, particularly by favoring species with broader niches. Such local patterns may thus anticipate potential threats from the ongoing expansion of the salmon industry to neighboring areas in Chile, resulting in regional changes of bird communities, toward a less diverse one and dominated by opportunistic, common, and generalist species such as gulls, vultures, and cormorants.     

Hunting behaviour and breeding performance of northern goshawks Accipiter gentilis, in relation to resource availability, sex, age and morphology

Animal territories that differ in the availability of food resources will require (all other things being equal) different levels of effort for successful reproduction. As a consequence, breeding performance may become most strongly dependent on factors that affect individual foraging where resources are poor. We investigated potential links between foraging behaviour, reproductive performance and morphology in a goshawk Accipiter gentilis population, which experienced markedly different resource levels in two different parts of the study area (rabbit-rich vs. rabbit-poor areas). Our analyses revealed (1) that rabbit abundance positively affected male reproductive output; (2) that age, size and rabbit abundance (during winter) positively affected different components of female reproductive output; (3) that foraging movements were inversely affected by rabbit abundance for both sexes (for females, this may mainly have reflected poor provisioning by males in the rabbit-poor area); (4) that younger breeders (both in males and females) tended to move over larger distances than older individuals (which may have reflected both a lack of hunting experience and mate searching); and (5) that male body size (wing length) showed some covariation with resource conditions (suggesting possible adaptations to hunting agile avian prey in the rabbit-poor area). Although we are unable to establish firm causal relationships with our observational data set, our results provide an example of how territory quality (here, food abundance) and individual features (here, age and morphology) may combine to shape a predator's foraging behaviour and, ultimately, its breeding performance.     

Pollination syndromes ignored: importance of non-ornithophilous flowers to Neotropical savanna hummingbirds

Generalization prevails in flower–animal interactions, and although animal visitors are not equally effective pollinators, most interactions likely represent an important energy intake for the animal visitor. Hummingbirds are nectar-feeding specialists, and many tropical plants are specialized toward hummingbird-pollination. In spite of this, especially in dry and seasonal tropical habitats, hummingbirds may often rely on non-ornithophilous plants to meet their energy requirements. However, quantitative studies evaluating the relative importance of ornithophilous vs. non-ornithophilous plants for hummingbirds in these areas are scarce. We here studied the availability and use of floral resources by hummingbirds in two different areas of the Cerrado, the seasonal savannas in Central Brazil. Roughly half the hummingbird visited plant species were non-ornithophilous, and these contributed greatly to increase the overall nectar availability. We showed that mean nectar offer, at the transect scale, was the only parameter related to hummingbird visitation frequency, more so than nectar offer at single flowers and at the plant scale, or pollination syndrome. Centrality indices, calculated using hummingbird–plant networks, showed that ornithophilous and non-ornithophilous plants have similar importance for network cohesion. How this foraging behaviour affects reproduction of non-ornithophilous plants remains largely unexplored and is probably case specific, however, we suggest that the additional energy provided by non-ornithophilous plants may facilitate reproduction of truly ornithophilous flowers by attracting and maintaining hummingbirds in the area. This may promote asymmetric hummingbird–plant associations, i.e., pollination depends on floral traits adapted to hummingbird morphology, but hummingbird visitation is determined more by the energetic "reward" than by pollination syndromes.     

Vulnerability risk assessment and adaptation to climate change induced sea level rise along the Mediterranean coast of Egypt

Consequence of the sea level rise (SLR) on the Mediterranean coastal areas in Egypt, particularly the Nile River Delta, has become an issue of major concern to Egypt’s population and the government. Previous publications disregard the entire Mediterranean coast of Egypt as an integral unit subject to the impacts of the SLR. This study aims to analyzing the risks, ranking the vulnerability and suggesting adaptation measures to mitigate the impact of the SLR along the Mediterranean coast of Egypt. Although the prominent features of Egypt’s Mediterranean coastal zone are the low lying coast of the Nile Delta, associated with land subsidence, tectonic activities and erosion; the contiguous coastal sectors are backed by shore-parallel carbonate ridges and Plateau (the western coast) and sand dune belts (Sinai coast). The coastal zone is ranked as high, moderate, and low vulnerable to the SLR. The social and biophysical vulnerabilities demonstrate the asymmetrical impacts of the SLR on the Mediterranean coast of Egypt. Areas at risk in the Alexandria region are Mandara and El Tarh whereas in the Nile Delta region, they are the Manzala Lagoon barrier, east and west of the Rosetta City, Gamil, and the Tineh plain. Risk associated with these impacts may be reduced provided the consideration of immediate and adequate adaptation measures.     

Detection Method for Avian Influenza Viruses in Water

Recent events have shown that humans may become infected with some pathogenic avian influenza A viruses (AIV). Since soil and water, including lakes, rivers, and seashores, may be contaminated by AIV excreted by birds, effective methods are needed for monitoring water for emerging viruses. Combining water filtration with molecular methods such as PCR is a fast and effective way for detecting viruses. The objective of this study was to apply a convenient method for the detection of AIV in natural water samples. Distilled water and lake, river, and seawater were artificially contaminated with AIV (H5N3) and passed through a filter system. AIV was detected from filter membrane by real-time RT-PCR. The performance of Zetapor, SMWP, and Sartobind D5F membranes in recovering influenza viruses was first evaluated using contaminated distilled water. SWMP, which gave the highest virus recoveries, was then compared with a pre-filter combined GF/F filter membrane in a trial using natural water samples. In this study, the cellulose membrane SMWP was found to be practical for recovery of AIVs in water. Viral yields varied between 62.1 and 65.9% in distilled water and between 1 and 16.7% in natural water samples. The borosilicate glass membrane GF/F combined with pre-filter was also feasible in filtering natural water samples with viral yields from 1.98 to 7.33%. The methods described can be used for monitoring fresh and seawater samples for the presence of AIV and to determine the source of AIV transmission in an outbreak situation.