Determining the diet of larvae of the red rock lobster (Jasus edwardsii) using high-throughput DNA sequencing techniques

The diet of Jasus edwardsii during its ~2-year larval (phyllosoma) phase is largely unknown. High mortalities experienced during larviculture might be reduced if their diet were nutritionally modelled on the natural diet. Here, prey species were identified from phyllosoma midgut glands using 454 pyrosequencing of 18S rDNA. We found that gelatinous zooplankton, particularly Siphonophora and Ctenophora, occurred frequently in the midgut glands of phyllosomas, resolving previous conjecture that these animals are in the diet of J. edwardsii phyllosomas. A high occurrence of sequencing reads from unicellular microbes may also reflect a reliance on scavenging detritus.     

Metal contamination recorded in the sediment of the semi-closed Bakar Bay (Croatia)

This study presents metal levels in the sediments of the Bakar Bay, with its main goal to evaluate recent anthropogenic influence, as well as over previous decades. Sediment profiles at 7 sampling points were taken. Chemical contents in bulk sediment were obtained using ICP, ICP-MS, and AAS methodologies, and 20 most significant elements were presented. Concentrations of selected elements were evaluated by factor statistical analyses to identify their source. Also, metal enrichment factor and geoaccumulation index were calculated, and spatial distribution maps for three sediment layers were constructed. Measured metal concentrations in sediment were compared with concentrations in other sediments from the Adriatic Sea. In addition, a set of sediment quality guidelines were also applied in order to predict the probability of adverse biological effects on the benthic community: This was found not to be very serious. Factor analysis clearly demonstrates the segregation between metals of natural origin resulted from soil and bedrock weathering (Li, Al, Cr, Sc), and with two anthropogenic sources originating from the city of Bakar and bulk cargo terminal (Hg, Pb, Zn, Ag, Sn, and Fe). Mercury (max 0.65 μg g^?1) is found to be the heaviest contaminant, followed by lead (max 71.5 μg g^?1), copper (89.3 μg g^?1), and zinc (156 μg g^?1). However, this study shows that Bakar Bay is considerably less polluted with toxic metals than it was believed.     

Uranium mining in Portugal: a review of the environmental legacies of the largest mines and environmental and human health impacts

The history of uranium mining in Portugal during almost one century has followed international demand peaks of both radium and uranium, which in turn were driven by medical, military, and civil applications. Nowadays, following price drop in the 1980s, mining activities decreased and ceased in 2001. The current challenge is to deal with environmental legacies left by old uranium mines, mainly located in Viseu and Guarda districts. In 2001, based on several radiological surveys carried out, the Portuguese government assumed the remediation costs of abandoned mine areas for environmental safety and public health protection. Detailed environmental and public health risk assessments were performed under the scope of studies both requested by the government and by funded research projects. It was found that the existing risks, due to radiological and chemical exposures to metals and radionuclide’s, were particularly high at the old milling facilities and mines where in situ and heap leaching of low-grade ore occurred. The different studies, involving both humans and non-human species from different trophic levels, demonstrated the existence of effects at different levels of biological organization (molecular, cellular, tissues, individuals, and populations) and on ecosystem services. To mitigate the risks, the environmental rehabilitation works at the Urgeiriça mine complex are almost complete, while at Cunha Baixa mine, they are presently in progress. These works and environmental improvements achieved and expected are described herein.     

An initial assessment of spatial relationships between respiratory cases,soil metal content,air quality and deprivation indicators in Glasgow,Scotland, UK: relevance to the environmental justice agenda

There is growing interest in links between poor health and socio-environmental inequalities (e.g. inferior housing, crime and industrial emissions) under the environmental justice agenda. The current project assessed associations between soil metal content, air pollution (NO₂/PM₁₀) and deprivation and health (respiratory case incidence) across Glasgow. This is the first time that both chemical land quality and air pollution have been assessed citywide in the context of deprivation and health for a major UK conurbation. Based on the dataset ‘averages’ for intermediate geography areas, generalised linear modelling of respiratory cases showed significant associations with overall soil metal concentration (p = 0.0367) and with deprivation (p < 0.0448). Of the individual soil metals, only nickel showed a significant relationship with respiratory cases (p = 0.0056). Whilst these associations could simply represent concordant lower soil metal concentrations and fewer respiratory cases in the rural versus the urban environment, they are interesting given (1) possible contributions from soil to air particulate loading and (2) known associations between airborne metals like nickel and health. This study also demonstrated a statistically significant correlation (?0.213; p < 0.05) between soil metal concentration and deprivation across Glasgow. This highlights the fact that despite numerous regeneration programmes, the legacy of environmental pollution remains in post-industrial areas of Glasgow many decades after heavy industry has declined. Further epidemiological investigations would be required to determine whether there are any causal links between soil quality and population health/well-being. However, the results of this study suggest that poor soil quality warrants greater consideration in future health and socio-environmental inequality assessments.     

High male reproductive success in a low-density Antarctic fur seal (Arctocephalus gazella) breeding colony

Understanding how population density influences mating systems may lead to important insights into the plasticity of breeding behavior, but few natural systems allow for such studies. Antarctic fur seals (Arctocephalus gazella) provide an interesting model system because they breed in colonies of varying densities. Previous studies have largely focused on a high-density site at Bird Island, South Georgia. Here, 13 highly polymorphic microsatellite loci were used to conduct a genetic analysis of a low-density breeding colony of this species at Livingston Island, approximately 1,600 km south of South Georgia. The majority of adults seen ashore (n?=?54) were sampled together with every pup born (n?=?97) over four consecutive years. Paternities were confidently assigned for 34 out of the 97 pups. Two out of 23 sampled males accounted for the paternity of 28 % of all pups sampled during the study and 82 % of the pups with an assigned father. Moreover, a full likelihood pedigree inference method assigned a further eight paternities to a single unsampled male seal that is inferred to have held a territory during the season before the study began. The most successful males in our study easily surpassed the previous record for the total number of pups sired per male seal for the species. Furthermore, we identified two triads of full siblings implying that their parents remated in three consecutive years. These findings suggest that territorial male fur seals may achieve greater success in monopolizing access to breeding females when population density is relatively low.     

Waves and turbulence in katabatic winds

The measurements taken during the Vertical Transport and Mixing Experiment (VTMX, October, 2000) on a northeastern slope of Salt Lake Valley, Utah, were used to calculate the statistics of velocity fluctuations in a katabatic gravity current in the absence of synoptic forcing. The data from ultrasonic anemometer-thermometers placed at elevations 4.5 and 13.9 m were used. The contributions of small-scale turbulence and waves were isolated by applying a high-pass digital (Elliptical) filter, whereupon the filtered quantities were identified as small-scale turbulence and the rest as internal gravity waves. Internal waves were found to play a role not only at canonical large gradient Richardson numbers $(\overline{\hbox {Ri}_\mathrm{g} } >1)$ , but sometimes at smaller values $(0.1 < \overline{\hbox {Ri}_\mathrm{g}}<1)$ , in contrast to typical observations in flat-terrain stable boundary layers. This may be attributed, at least partly, to (critical) internal waves on the slope, identified by Princevac et al. [1], which degenerate into turbulence and help maintain an active internal wave field. The applicability of both Monin-Obukhov (MO) similarity theory and local scaling to filtered and unfiltered data was tested by analyzing rms velocity fluctuations as a function of the stability parameter z/L, where L is the Obukhov length and z the height above the ground. For weaker stabilities, $\hbox {z/L}<1$ , the MO similarity and local scaling were valid for both filtered and unfiltered data. Conversely, when $\hbox {z/L}>1$ , the use of both scaling types is questionable, although filtered data showed a tendency to follow local scaling. A relationship between z/L and $\overline{\hbox {Ri}_\mathrm{g} }$ was identified. Eddy diffusivities of momentum $\hbox {K}_\mathrm{M}$ and heat $\hbox {K}_\mathrm{H}$ were dependent on wave activities, notably when $\overline{\hbox {Ri}_\mathrm{g} } > 1$ . The ratio $\hbox {K}_{\mathrm{H}}/\hbox {K}_{\mathrm{M}}$ dropped well below unity at high $\overline{\hbox {Ri}_\mathrm{g} }$ , in consonance with previous laboratory stratified shear layer measurements as well as other field observations.     

Demographic parameters of two populations of red coral (Corallium rubrum L. 1758) in the North Western Mediterranean

The demographic and reproductive structure of populations represents the main data set needed for conservation and management plans. Mediterranean red coral Corallium rubrum has been exploited for 2,000 years, but only recently management plans have been solicited by the international community. We examined and compared the demographic features of two red coral shallow populations located in distinct geographic locations: Portofino (Italy) and Cap de Creus (Spain). Adults and juveniles density, growth rates, population size and age structure, fecundity and fertility were examined. Juveniles were the dominant class (33 %) in both populations. The analysis of the gamete content of 653 colonies revealed that the populations have balanced sex ratios and similar fertility and polyp fecundity. The average annual growth rate, determined on 119 colonies by annual growth rings count, was similar in both populations (0.24 mm year^?1), decreasing with colony age. Maximum life span of 99 % of the colonies was 60 and 40 years at Portofino and Cap de Creus, respectively. Minimum harvestable size (7 mm basal diameter) was reached in 30–35 years, and the percentage of colonies above it was 6.7 % at Portofino and 2.1 % at Cap de Creus, where juvenile and adult colony densities were significantly lower and the percentage of commercial-sized colonies reduced by 25 % in just a few years. Notwithstanding similar growth and fecundity, the two populations showed different densities and size/age structures suggesting local factors, together with different fishing pressures, have to be taken into account in the management plans for this species.     

Does temporal and spatial segregation explain the complex population structure of humpback whales on the coast of West Africa?

Humpback whales (Megaptera novaeangliae) in the Southeastern Atlantic Ocean (International Whaling Commission ‘Breeding Stock B’—BSB) are distributed from the Gulf of Guinea to Western South Africa. Genetic data suggest that this stock may be sub-structured, but it remains unknown if this is due to reproductive segregation. This paper evaluates the spatial and temporal population structure of BSB humpback whales using a combination of maternally and bi-parentally inherited markers. The genetic differentiation that we identify in this study could be due to a combination of (1) spatial and/or temporal segregation on breeding grounds in the greater Gulf of Guinea, (2) the possibility of maternally inherited site fidelity to specific feeding grounds and (3) the use of two generalized but exclusive migratory routes (coastal and offshore) between feeding and breeding areas. Further, photo-identification and genetic sampling efforts in other areas of the Sub-Saharan Western Africa winter range and targeted deployment of satellite tags would help to clarify some of the apparent complexity in the population structure of animals biopsied in this region.     

Habitat,movements and environmental preferences of dusky sharks,Carcharhinus obscurus,in the northern Gulf of Mexico

The dusky shark (Carcharhinus obscurus) is the largest member of the genus Carcharhinus and inhabits coastal and pelagic ecosystems circumglobally in temperate, subtropical and tropical marine waters. In the western North Atlantic Ocean (WNA), dusky sharks are overfished and considered vulnerable by the International Union for the Conservation of Nature. As a result, retention of dusky sharks in commercial and recreational fisheries off the east coast of the United States (US) and in the northern Gulf of Mexico is prohibited. Despite the concerns regarding the status of dusky sharks in the WNA, little is known about their habitat utilization. During the summers of 2008–2009, pop-up satellite archival tags were attached to ten dusky sharks (one male, nine females) at a location where they have been observed to aggregate in the north central Gulf of Mexico southwest of the Mississippi River Delta to examine their movement patterns and habitat utilization. All tags successfully transmitted data with deployment durations ranging from 6 to 124 days. Tag data revealed shark movements in excess of 200 km from initial tagging locations, with sharks primarily utilizing offshore waters associated with the continental shelf edge from Desoto Canyon to the Texas/Mexican border. While most sharks remained in US waters, one individual moved from the northern Gulf of Mexico into the Bay of Campeche off the coast of Mexico. Sharks spent 87 % of their time between 20 and 125 m and 83 % of their time in waters between 23 and 30 °C. Since dusky sharks are among the most vulnerable shark species to fishing mortality, there is a recovery plan in place for US waters; however, since they have been shown to make long-distance migrations, a multi-national management plan within the WNA may be needed to ensure the successful recovery of this population.     

Identification and assessment of water pollution as a consequence of a leachate plume migration from a municipal landfill site (Tucumán,Argentina)

Landfills constitute potential sources of different pollutants that could generate human health and environmental problems. While some landfills currently work under the protection of a bottom liner with leachate collection, it was demonstrated that migration could take place even yet with these cautions. The purpose of this paper is to assess the pollution caused by a leachate plume from a municipal landfill that is affecting both groundwater and surface waters. The research was carried out at Pacará Pintado landfill in northwestern Argentina. Analysis of water samples indicates that leachate is affecting groundwater under the landfill area and an abandoned river channel hydraulically connected. In the center of the landfill area, the plume is anoxic and sulfate, nitrate, iron and manganese reduction zones were identified. Leachate plume presented high concentration of organic matter, Fe, Mn, NH₄ ⁺, Cl^? and Cr reaching an extension of 900 m. The presence of a leachate plume in a landfill site with a single liner system implies that the use of this groundwater pollution control method alone is not enough especially if permeable sediments are present below.