Rapid prenatal diagnosis of sickle cell diseases using oligonucleotide ligation assay coupled with laser-induced capillary fluorescence detection

Prenatal diagnosis of sickle cell diseases has been available for several years, and our laboratory has performed over 1000 prenatal diagnoses. However, currently available techniques are labor-intensive and time-consuming, and thus the diagnosis is delayed, making the mother's decision difficult. We describe a rapid, high-throughput technique based on the ligation assay coupled with automated capillary fluorescence detection. This new approach allows the diagnosis of both Hgb S and Hgb C to be available in a few hours. We have utilized this technique in 30 prenatal diagnoses and found it to be in complete agreement with the standard diagnoses. Copyright © 2002 John Wiley & Sons, Ltd.     

Parameterizing soil and weather inputs for crop simulation models using the VEMAP database

Soil and weather data are critical for the operation of crop simulation models. However, in many cases they are not readily available, especially applications at a regional or larger spatial scale. The Vegetation/Ecosystem Modeling and Analysis Project (VEMAP) provides massive quantities of geo-referenced soil and weather data variables on a half-degree latitude–longitude grid covering the conterminous USA. The VEMAP data were derived from a range of products and analyses, including ground observations, cluster analyses, kriging interpolation, and data assimilation. The objective of this study was to convert the soil and daily weather data of VEMAP into a format that can be used in the popular modeling software Decision Support System for Agrotechnology Transfer (DSSAT). Users can select appropriate soil or daily weather information for the area of interest. The conversion of the VEMAP data resulted in 5927 unique soil profiles and 3261 unique weather station files that encompass daily data from 1895 to 1993. To demonstrate the utility of this database in DSSAT, one representative county of the state of Georgia, USA was selected and a soybean simulation model was employed to simulate final yield using the extracted soil and daily weather data for the normal year (1961–1990). Meanwhile, the extracted daily weather data were compared with ground station observations from the National Weather Service Cooperative Observer Program (COOP). The paired t-test showed that no significant differences were found between the daily weather data and between simulated yields based on VEMAP and COOP weather data for the selected location. The outcome of this research showed that the VEMAP data can be used for crop model applications. However, further research is needed to assess the accuracy of the datasets for a variety of crops at a regional or national scale.     

New stem-sauropodomorph (Dinosauria,Saurischia) from the Triassic of Brazil

Post-Triassic theropod, sauropodomorph, and ornithischian dinosaurs are readily recognized based on the set of traits that typically characterize each of these groups. On the contrary, most of the early members of those lineages lack such specializations, but share a range of generalized traits also seen in more basal dinosauromorphs. Here, we report on a new Late Triassic dinosaur from the Santa Maria Formation of Rio Grande do Sul, southern Brazil. The specimen comprises the disarticulated partial skeleton of a single individual, including most of the skull bones. Based on four phylogenetic analyses, the new dinosaur fits consistently on the sauropodomorph stem, but lacks several typical features of sauropodomorphs, showing dinosaur plesiomorphies together with some neotheropod traits. This is not an exception among basal dinosaurs, the early radiation of which is characterized by a mosaic pattern of character acquisition, resulting in the uncertain phylogenetic placement of various early members of the group.     

The long-term stability of calcium arsenates: Implications for phase transformation and arsenic mobilization

It is well known that calcium arsenates may not be a good choice for arsenic removal and immobilization in hydrometallurgical practices. However, they are still produced at some plants in the world due to various reasons. Furthermore, calcium arsenates can also naturally precipitate under some specific environments. However, the transformation process of poorly crystalline calcium arsenates (PCCA) and the stability of these samples under atmospheric CO₂ are not yet well understood. This work investigated the transformation process of PCCA produced by using different neutralization reagents (CaO vs. NaOH) with various Ca/As molar ratios at pH?7–12 in the presence of atmospheric CO₂. After aging at room temperature for a period of time, for samples neutralized with NaOH and precipitated at pH?10 and 12, release of arsenic back into the liquid phase occurred. In contrast, for the samples precipitated at pH?8, the aqueous concentration of arsenic was observed to decrease. XRD, Raman, and SEM results suggested that the formation of various types of crystalline calcium carbonates and/or calcium arsenates controls the arsenic behavior. Moreover, the application of lime may enhance the stability of the generated PCCA. However, no matter what neutralization reagent is used, the stability of the generated PCCA is still of concern.     

Modeling population effects of the Deepwater Horizon oil spill on a long-lived species

The 2010 Deepwater Horizon (DWH) oil spill exposed common bottlenose dolphins (Tursiops truncatus) in Barataria Bay, Louisiana to heavy oiling that caused increased mortality and chronic disease and impaired reproduction in surviving dolphins. We conducted photographic surveys and veterinary assessments in the decade following the spill. We assigned a prognostic score (good, fair, guarded, poor, or grave) for each dolphin to provide a single integrated indicator of overall health, and we examined temporal trends in prognostic scores. We used expert elicitation to quantify the implications of trends for the proportion of the dolphins that would recover within their lifetime. We integrated expert elicitation, along with other new information, in a population dynamics model to predict the effects of observed health trends on demography. We compared the resulting population trajectory with that predicted under baseline (no spill) conditions. Disease conditions persisted and have recently worsened in dolphins that were presumably exposed to DWH oil: 78% of those assessed in 2018 had a guarded, poor, or grave prognosis. Dolphins born after the spill were in better health. We estimated that the population declined by 45% (95% CI 14–74) relative to baseline and will take 35 years (95% CI 18–67) to recover to 95% of baseline numbers. The sum of annual differences between baseline and injured population sizes (i.e., the lost cetacean years) was 30,993 (95% CI 6607–94,148). The population is currently at a minimum point in its recovery trajectory and is vulnerable to emerging threats, including planned ecosystem restoration efforts that are likely to be detrimental to the dolphins’ survival. Our modeling framework demonstrates an approach for integrating different sources and types of data, highlights the utility of expert elicitation for indeterminable input parameters, and emphasizes the importance of considering and monitoring long-term health of long-lived species subject to environmental disasters. Article impact statement: Oil spills can have long-term consequences for the health of long-lived species; thus, effective restoration and monitoring are needed.     

Balancing making a difference with making a living in the conservation sector

Goals play important roles in people's lives because they focus attention, mobilize effort, and sustain motivation. Understanding conservationists’ satisfaction with goal progress may provide insights into real-world environmental trends and flag risks to their well-being and motivation. We asked 2694 conservationists working globally how satisfied they were with progress toward goals important to them. We then explored how this satisfaction varied among groups, including demographic and occupational. Finally, we looked at respondents' experiences associated with goal-progress satisfaction. Many (94.0%) indicated that making a meaningful contribution to conservation was an important goal for them, and over half were satisfied or very satisfied in this area (52.5%). However, respondents were generally dissatisfied with progress on collective conservation goals (e.g., stopping species loss). Some groups were more likely to report dissatisfaction than others. For instance, those in conservation for longer tended to be less satisfied with collective goal progress (log odds –0.21, 95% credibility interval [CI] –0.32 to –0.10), but practitioners reported greater satisfaction (log odds 0.38, 95% CI 0.15–0.60). Likewise, those who were more optimistic in life (log odds 0.24, 95% CI 0.17–0.32), male (log odds 0.25, 95% CI 0.10–0.41), and working in conservation practice (log odds 0.25, 95% CI 0.08–0.43) reported greater satisfaction with individual goal progress. Free-text responses suggested widespread dissatisfaction with livelihood goals, particularly related to job security and adequate compensation. Although contributing to conservation appeared to be a source of satisfaction, slow goal progress in other areas––particularly around making a living––looked to be a source of distress and demotivation. Employers, funders, professional societies, and others should consider ways to help those in the sector make a difference while making a satisfactory living by, for example, prioritizing conservationists′ well-being when allocating funding. This support could include avoiding exploitative practices, fostering supportive work environments, and celebrating positive outcomes.     

Temporal distribution patterns of metals in water,sediment, and components of the trophic structure in a tropical coastal lagoon of the Gulf of Mexico

Environmental Science and Pollution Research - Trophic transfer and bioaccumulation of trace metals have a profound impact on the structure and function of coastal areas; however, the metal...     

Applications of Cr-rich composted tannery sludge in the soil decrease microbial biomass and select specific bacterial groups

The tannery industries generate a solid waste known as tannery sludge, which is composed of organic and inorganic compounds, mainly chromium (Cr). When Cr is not removed from the tannery sludge, this solid waste is metal-rich and its application could affect the soil microorganisms. Alternatively, the composting of the tannery sludge can contribute to decreasing the concentration of Cr in the composted tannery sludge (CTS). However, in some cases, the concentration of Cr remains high in the CTS. During the last 10 years, the Cr-rich CTS has been successively applied in the soil, and its effect on soil microbial properties was verified. Here, we discuss the effect of successive applications of Cr-rich CTS on soil microbes. Interestingly, the findings have shown that successive applications of Cr-rich CTS selected specific soil microbial groups with potential functions. In addition, the studies added a new focus to further research evaluating the potential effect of successive applications of Cr-rich CTS on the rare microbial community.

     

The Potential of Cleaner Fermentation Processes for Bioplastic Production: A Narrative Review of Polyhydroxyalkanoates (PHA) and Polylactic Acid (PLA)

Journal of Polymers and the Environment - Synthetic plastics generate major problems in landfills after their consumption for occupying high volumes and difficult the decomposition of other organic...