Restoration of Some Parameters in the Development of Benthos After Reduction of Anthropogenous Loading in the Ecosystem of the Sevastopol Bay in the Black Sea

Research on benthic communities have been carried out in the Sevastopol Bay of the Black Sea for a hundred years. The anthropogenous influence began to have an effect already in the 20–30^th. In this period, all oyster-banks were lost and the mussel-silt and mellina-silt communities have begun to degrade and were not found during almost seventy years in the Bay. The worst state of benthic communities was observed in the 60–90^th, when species of bottom animals were not found over some parts of the sea. In this period, only 10 macrozoobenthic species were registered in the Bay. Mollusks: Nassarius reticulatus, Bittium reticulatum, Cerastoderma glaucum and polychaetes: Nephtys hombergii, Neanthes succinea have proved the most enduring at high anthropogenous loadings The faunistic complex of benthic species registered in 1913 had the greatest similarity to the benthic species complex of 2002. Return of mussel, Melinna palmata polychaete and Ascidiella aspersa sea squirt in benthic communities of the Sevastopol Bay are responsible for the similarity between these faunistic complexes. The restoration of local populations of these benthic species has followed the significant decrease of the anthropogenous loading on the sea ecosystems as a result of the significant reduction of the military naval base in the Bay during the last five to ten years.     

Forensic entomology

Necrophagous insects are important in the decomposition of cadavers. The close association between insects and corpses and the use of insects in medicocriminal investigations is the subject of forensic entomology. The present paper reviews the historical background of this discipline, important postmortem processes, and discusses the scientific basis underlying attempts to determine the time interval since death. Using medical techniques, such as the measurement of body temperature or analysing livor and rigor mortis, time since death can only be accurately measured for the first two or three days after death. In contrast, by calculating the age of immature insect stages feeding on a corpse and analysing the necrophagous species present, postmortem intervals from the first day to several weeks can be estimated. These entomological methods may be hampered by difficulties associated with species identification, but modern DNA techniques are contributing to the rapid and authoritative identification of necrophagous insects. Other uses of entomological data include the toxicological examination of necrophagous larvae from a corpse to identify and estimate drugs and toxicants ingested by the person when alive and the proof of possible postmortem manipulations. Forensic entomology may even help in investigations dealing with people who are alive but in need of care, by revealing information about cases of neglect.     

RNA interference: from an ancient mechanism to a state of the art therapeutic application?

Now that the sequencing of many genomes has been completed, the basic challenges are finding the genes and predicting their functions. Up until now, a large information gap has existed between the knowledge of genome sequence and our knowledge of protein function. The assessment of gene function may be performed using the tools of reverse genetics, including knock-out mice, antisense oligomers, aptamers, and ribozymes. These approaches have been superseded by RNA interference (RNAi), which exhibits much more potency for the investigation of protein function than the techniques listed above. As already known some years ago, RNAi is based on an ancient anti-viral defense mechanism in lower eukaryotes. It is induced by double-stranded RNA and its processing to 21–23 nt small interfering RNAs (siRNAs), which cause the degradation of homologous endogenous mRNA. The way RNAi works has still to be determined, but it already serves as a first-choice approach to generate loss-of-function phenotypes among a broad variety of eukaryotic species, such as nematodes, flies, plants, fungi and mammals. RNAi also represents an extremely powerful tool, becoming a therapeutic approach to curing infectious diseases originated by viral or parasitic invasion. In this review we present the current view of how RNAi works in different eukaryotic species and its high potential for functional genomics and in rational drug design.     

'Molecular farming' of antibodies in plants

'Molecular farming' is the production of valuable recombinant proteins in transgenic organisms on an agricultural scale. While plants have long been used as a source of medicinal compounds, molecular farming represents a novel source of molecular medicines, such as plasma proteins, enzymes, growth factors, vaccines and recombinant antibodies, whose medical benefits are understood at a molecular level. Until recently, the broad use of molecular medicines was limited because of the difficulty in producing these proteins outside animals or animal cell culture. The application of molecular biology and plant biotechnology in the 1990s showed that many molecular medicines or vaccines could be synthesised in plants and this technology is termed 'molecular farming'. It results in pharmaceuticals that are safer, easier to produce and less expensive than those produced in animals or microbial culture. An advantage of molecular farming lies in the ability to perform protein production on a massive scale using hectares of cultivated plants. These plants can then be harvested and transported using the agricultural infrastructure. Thus, molecular farming allows rapid progress from genetic engineering to crop production, and new cash crops producing recombinant proteins are already being commercially exploited. We speculate that as functional genomics teaches us more about the nature of disease, molecular farming will produce many of the protein therapeutics that can remedy it.     

Mark-recapture estimators for dual frame population size of prominent nesting structures: the effect of uncertain detection probability

The combined mark-recapture and line transect sampling methodology proposed by Alpizar-Jara and Pollock [Journal of Environmental and Ecological Statistics, 3(4), 311–327, 1996; In Marine Mammal Survey and Assessment Methods Symposium. G.W. Garner, S.C. Amstrup, J.L. Laake, B.F.J. Manly, L.L. McDonald, and D.C. Robertson (Eds.), A.A. Balkema, Rotterdam, Netherlands, pp. 99–114, 1999] is used to illustrate the estimation of population size for populations with prominent nesting structures (i.e., bald eagle nests). In the context of a bald eagle population, the number of nests in a list frame corresponds to a pre-marked sample of nests, and an area frame corresponds to a set of transect strips that could be regularly monitored. Unlike previous methods based on dual frame methodology using the screening estimator [Haines and Pollock (Journal of Environmental and Ecological Statistics, 5, 245–256, 1998a; Survey Methodology, 24(1), 79–88, 1998b)], we no longer need to assume that the area frame is complete (i.e., all the nests in the sampled sites do not need to be seen). One may use line transect sampling to estimate the probability of detection in a sampled area. Combining information from list and area frames provides more efficient estimators than those obtained by using data from only one frame. We derive an estimator for detection probability and generalize the screening estimator. A simulation study is carried out to compare the performance of the Chapman modification of the Lincoln–Petersen estimator to the screening estimator. Simulation results show that although the Chapman estimator is generally less precise than the screening estimator, the latter can be severely biased in presence of uncertain detection. The screening estimator outperforms the Chapman estimator in terms of mean squared error when detection probability is near 1 wheareas the Chapman estimator outperforms the screening estimator when detection probability is lower than a certain threshold value depending on particular scenarios.     

Gastroliths in<Emphasis Type="Italic"> Yanornis</Emphasis>: an indication of the earliest radical diet-switching and gizzard plasticity in the lineage leading to living birds?

Yanornis martini is an Early Cretaceous basal ornithurine bird. Its fish-eating diet was previously recognized from a discrete mass of disarticulated fish remains discovered in its abdominal region. A new complete and articulated specimen of Yanornis martini preserves abundant in-situ gastroliths such as have been associated with a herbivorous diet. We suggest that the occurrence of gastroliths in this specimen, fish remains in a second, and the lack of gastroliths in three others, is consistent with diet-switching in Yanornis martini. Incompatibility of the preserved data with explanations of the grit as an artifact of preservation or result of accidental ingestion is discussed. This discovery indicates the earliest presence of intermittent diet change (and associated gizzard plasticity) observed in extant birds seasonally and in response to changes in available food sources.     

Scale-dependent habitat selection in migratory frugivorous passerines

Frugivorous migrants may select fruit-rich habitats en route to attain high food rewards, yet their stopover behavior may also be shaped by other considerations, such as predation risk. During 1996–2001 we investigated autumn stopover habitat use of three Sylvia warblers (sylviids; S. hortensis, S. atricapilla and S. curruca) and three Turdidae chats (turdids; Cercotrichas galactotes, Oenanthe hispanica and Phoenicurus phoenicurus) in planted groves of the fruiting tree Pistacia atlantica in Lahav Forest, Israel, which is located at the edge of a desert. We used fecal analysis, a constant-effort trapping scheme and field observations to estimate the extent of frugivory, and bird habitat and microhabitat selection with regard to natural fruit and foliage densities. We also measured bird microhabitat selection in a set of fruit-manipulated trees. We trapped a total of 2,357 birds during the course of the study. Although sylviids exhibited higher frugivory level than turdids, both species groups exhibited a similar significantly positive correlation between bird and fruit densities at the habitat scale. However, at the microhabitat scale, sylviids selected densely foliated trees, whilst turdids were randomly distributed among trees. Our findings suggest that both species groups selected fruit-rich stopover habitats to take advantage of the high food availability before the demanding migration journey. No other mechanism except predation avoidance can explain the sylviids microhabitat selection; the migrants used foliage cover to reduce bird detectability by raptors. We conclude that en route passerines may use staging habitats in a sophisticated manner, by adopting scale-related behavior with regard to the availability of food and refuge cover.     

Genetic variation in natural honeybee populations,<Emphasis Type="Italic"> Apis mellifera capensis</Emphasis>

Genetic variation in honeybee, Apis mellifera, populations can be considerably influenced by breeding and commercial introductions, especially in areas with abundant beekeeping. However, in southern Africa apiculture is based on the capture of wild swarms, and queen rearing is virtually absent. Moreover, the introduction of European subspecies constantly failed in the Cape region. We therefore hypothesize a low human impact on genetic variation in populations of Cape honeybees, Apis mellifera capensis. A novel solution to studying genetic variation in honeybee populations based on thelytokous worker reproduction is applied to test this hypothesis. Environmental effects on metrical morphological characters of the phenotype are separated to obtain a genetic residual component. The genetic residuals are then re-calculated as coefficients of genetic variation. Characters measured included hair length on the abdomen, width and length of wax plate, and three wing angles. The data show for the first time that genetic variation in Cape honeybee populations is independent of beekeeping density and probably reflects naturally occurring processes such as gene flow due to topographic and climatic variation on a microscale.     

Factors inducing the intense burrowing activity of the red-swamp crayfish,<Emphasis Type="Italic"> Procambarus clarkii</Emphasis>, an invasive species

The burrowing activity of the invasive red-swamp crayfish, Procambarus clarkii, was studied along a 25-m-long transect in an irrigation ditch system in Italy. Our objective was to understand the factors inducing this species intense digging, which can result in bank collapse and consequently in severe damage to both agricultural fields and natural ecosystems. Burrow morphology and position, together with their occupancy by crayfish and digging, were recorded once every 6 h for 10 consecutive days. The majority of burrows were simple, although a few had a chimney and were constructed at a farther distance from the water surface than simple burrows. Burrow occupancy and digging, together with their plugged/unplugged status, were constant throughout a 24-h cycle and were not related to any abiotic parameter of the habitat. Crayfish occupied and dug a burrow for a relatively short time (6 h on average). Once abandoned, old burrows were rarely reoccupied and often collapsed, while crayfish excavated new ones. As a result, the overall number of burrows increased. This massive use of banks by P. clarkii seems to be related to soil composition and humidity, which favour crayfish digging but also cause the easy collapse of burrows.