Utility of North Atlantic Right Whale Museum Specimens for Assessing Changes in Genetic Diversity

Abstract: We examined six historical specimens of the endangered North Atlantic right whale ( Eubalaena glacialis ) using DNA isolated from documented baleen plates from the late nineteenth and early twentieth centuries. Sequences from the mitochondrial DNA (mtDNA) control region from these samples were compared with those from a near-exhaustive survey (269 of approximately 320 individuals) of the remaining right whales in the western North Atlantic Ocean. Our results suggest that there has been only relatively modest change in maternal lineage diversity over the past century in the North Atlantic right whale population. Any significant reduction in genetic variation in the species most likely occurred prior to the late nineteenth century. One historical specimen was from the last documented female capable of propagating one of the maternal lineages in the population today; no females in the existing population have been found to carry this mtDNA haplotype. Analysis of the only specimens from the eastern North Atlantic right whale population ever to be examined revealed that eastern and western North Atlantic right whales may not have been genetically differentiated populations. Loss of gene diversity experienced by North Atlantic right whales over the last century has been modest, and the six decades of protection have been successful in maintaining much of the maternal lineage diversity that was present in the late nineteenth century.     

Cougar Dispersal Patterns, Metapopulation Dynamics, and Conservation

Abstract: We examined cougar (   Puma concolor ) dispersal, emigration, and immigration in the San Andres Mountains, New Mexico, from 1985 to 1995 to quantify the effects of dispersal on the local population and surrounding subpopulations. We captured, tagged, and radio-collared animals to detect the arrival of new immigrants and dispersal characteristics of progeny. We found that cougars in southern New Mexico exhibited a metapopulation structure in which cougar subpopulations were separated by expanses of noncougar habitat and linked by dispersers. Of 43 progeny (n = 20 males , 23 females ) studied after independence, only 13 females exhibited philopatric behavior. Males dispersed significantly farther than females, were more likely to traverse large expanses of noncougar habitat, and were probably most responsible for nuclear gene flow between habitat patches. We estimated that an average of 8.5 progeny (i.e., cougars born in the study area) successfully emigrated from and 4.3 cougars successfully immigrated to the San Andres Mountains each year. Concurrently, an average of 4.1 progeny were recruited into the San Andres cougar population. Protected cougar subpopulations can contribute to metapopulation persistence by supplying immigrants to surrounding subpopulations that are affected by fragmentation or offtake by humans. Cougar population dynamics and dispersal behavior dictate that cougar management and conservation should be considered on a regional scale.     

An experiment on the ability of free-ranging turkey vultures (Cathartes aura) to locate carrion by chemical cues

((without abstract.))     

The application of generalized linear mixed models to multi-level sampling for insect population monitoring

Iwao's quadratic regression or Taylor's Power Law (TPL) are commonly used to model the variance as a function of the mean for sample counts of insect populations which exhibit spatial aggregation. The modeled variance and distribution of the mean are typically used in pest management programs to decide if the population is above the action threshold in any management unit (MU) (e.g., orchard, forest compartment). For nested or multi-level sampling the usual two-stage modeling procedure first obtains the sample variance for each MU and sampling level using ANOVA and then fits a regression of variance on the mean for each level using either Iwao or TPL variance models. Here this approach is compared to the single-stage procedure of fitting a generalized linear mixed model (GLMM) directly to the count data with both approaches demonstrated using 2-level sampling. GLMMs and additive GLMMs (AGLMMs) with conditional Poisson variance function as well as the extension to the negative binomial are described. Generalization to more than two sampling levels is outlined. Formulae for calculating optimal relative sample sizes (ORSS) and the operating characteristic curve for the control decision are given for each model. The ORSS are independent of the mean in the case of the AGLMMs. The application described is estimation of the variance of the mean number of leaves per shoot occupied by immature stages of a defoliator of eucalypts, the Tasmanian Eucalyptus leaf beetle, based on a sample of trees within plots from each forest compartment. Historical population monitoring data were fitted using the above approaches.     

Impact of continental margins in the Mediterranean Sea: Hints from the surface colour and temperature historical record

The surface colour and temperature fields of the Mediterranean Sea, as appearing in time series, of basin-wide images available in the CZCS (1979–1985) and AVHRR (1982–1991) historical archives, differentiate between basin interior and continental margins affected by coastal patterns, river plumes, and mesoscale features. The original data were processed to apply calibration factors, to correct for atmospheric contamination, and to estimate chlorophyll-like pigment concentration and surface temperature. Composites were derived, as monthly and annual means, using a fixed equal-area projection with a 1-km² pixel grid. Enhanced pigment values and lower temperatures along the northern coastal areas (i.e. the Ligurian, Provençal and Balearic basins, as well as the Adriatic, and Aegean Seas) have been associated with the impact of runoff from continental margins (i.e. both a direct impact due to the sediment load and one induced on the planktonic flora by the associated nutrient load) and with vertical mixing due to the prevailing winds (i.e. the Mistral in the northwest, the Bora in the Adriatic, the Etesians in the Aegean). The pattern of increasing pigments and decreasing temperatures in seen to develop in the monthly images from the coastal zone towards the open sea from summer to winter, and then back from winter to summer. The southern coastal areas show different values, namely lower pigments and higher temperatures (except in areas where the data are altered by signal contamination). It is suggested that differences in geomorphology and meteorology of the basin margins have an impact on both water biogeochemistry and dynamics, influencing the biooptical and thermal properties of the various sub-basins, and of the entire Mediterranean region.     

Ökotoxikologische und humantoxikologische Risikobewertung PAK-belasteter Böden vor und nach biologischer Behandlung

The goal of the present work is to assess the adverse effects of soil bound polycyclic aromatic hydrocarbons (PAH) which remain in soils after biological remediation. We focus on risk assessment for mammalian species with respect to the oral uptake of contaminated soil particles and compare the results of a biomarker test with those of an ecotoxicological assay, the bioluminescence inhibition test withVibrio fischeri. As a biomarker effect in mammals, we determined the liver microsomal cytochrome P450 enzyme CYP1A1 which is induced by PAH in exposed rats. After biological soil treatment, different amounts of PAH remain in the soil depending on the soil properties and initial pollutant composition. Particularly, higher condensated PAH resists biological treatment due to its hydrophobicity. In addition, high amounts of organic carbon in the soils affect remediation efficiency. In the bioluminescence inhibition test, eluates of all biologically treated soils studied do not reveal any or only low inhibitory effects. In contrast, the oral uptake of biologically treated contaminated soils leads to induction levels for CYP1A1 similar to those in the untreated samples. A good correlation is obtained between CYP1A1 levels and the amount of 5 and 6-ring PAH in the soil samples. The main result is that the remediation efficiency determined by the luminescence test is not reflected by the biomarker test, a finding which indicates the high bioavailability of residual PAH in soils. Consequently, new criteria for human risk assessment can be delineated.     

Chemical composition of water conditioned by crowdedMoina macrocopa (Crustacea: Cladocera)

The chemical composition of water conditioned by colonies ofMoina macrocopa and involved in the regulation of their life cycle was analyzed in comparison with water samples from natural water bodies. Dechlorinated tap water was used as the control medium. The results showed that metabolism of crustaceans leads to an increase in the concentrations of phosphorus and nitrogen in all forms, the appearance of protein and carbohydrate fractions, and changes in the composition of lipid fractions in the water conditioned by their colonies. The contents of all organic components are very low, which makes their identification difficult. Concentrations of substances identified in the conditioned water do not exceed those occurring in nature.     

Gradient analysis of the chrogenetic structure of lowland and highland scotch pine populations

Gradients of genetic distances (GGDs) between 26 adjacent cenopopulations of Scotch pine (Pinus sylvestris L.) along the transects through the distinct landscape-ecotopic isolation borders were analyzed graphically. The results made it possible to reveal and quantitatively estimate gradients and borders of gene-pool structural patterns in populations of this species in the central part of Northern Eurasia. In lowland areas, the most distinct borders were found between pine populations growing on dry lands and bogs (Pineta sphagnosa) in the forest zone of the Transural region, as well as between the Arakaragaiskii and Amankaragaiskii island pine forests in the steppe zone (Northern Turgai). In highland areas (the Urals and the Carpathians), the greatest GGDs were observed between low-mountain (about 600 m above sea level) and middle-mountain (850–900 m) populations. Analysis of GGDs is a promising gene-geographic method for determining population borders and studying the chorogenetic structure of species.