Documentation of selected constructs and parameter values in the aquatic model cleaner

Process representations critical to the phytoplankton and zooplankton submodels are described. These include constructs for: light- and nutrient-limitations and their interaction, temperature, consumption, and population-age structure. Values for key parameters are documented with reference to the literature on aquatic ecology and ecological modelling. Time-course relationships of the processes affecting the phytoplankton, zooplankton, phosphorus and nitrogen compartments are presented and discussed. These serve as additional documentation and are an important result of modelling synthesis.     

Ecological energetics of Nerita (Archaeogastropoda,Neritacea) populations on Barbados,West Indies

Population energy budgets estimated on the assumption of steady state conditions for Nerita tessellata Gmelin, N. versicolor Gmelin, and N. peloronta L. on Barbados, W. Indies, are presented. Large differences in population structure, and hence energetics, occurred at different localities along the beach. Relatively high proportions (81 to 88%) of the assimilated energy were lost via metabolism. Assimilation efficiencies ranged from 39 to 43%, net growth efficiencies from 5 to 13%, and ecological efficiencies from 3 to 7%. For each species, production (P), energy flow (A) and total energy consumption (C) were expressed as functions of animal size, in order to facilitate gross estimations of the energy components for other populations for which data on size-frequency and density are available. Respiration studies of all three species in the laboratory failed to detect differences between respiration rates in air or under seawater.     

Genealogical relationships within and among shallow-water <Emphasis Type="Italic">Ciona</Emphasis> species (Ascidiacea)

In spite of historical and current interest in Ciona intestinalis and its congeners, little is known about evolutionary relationships among the members of the genus Ciona. Here 744-bp sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene are used to examine phylogenetic relationships among three described species (C. intestinalis, C. roulei, C. savignyi) sampled from multiple coastal sites in the Northeast Pacific (CA, USA), Northwest Atlantic (from New Hampshire to Connecticut, USA), Northeast Atlantic (Sweden and The Netherlands), and Mediterranean (Banyuls-sur-Mer, France). The samples were collected in June–October 2005. The COI sequences of Northeast Pacific/Mediterranean (Type A) and Northwest Atlantic (Type B) C. intestinalis differ by ∼12% and C. roulei is nested within Type B C. intestinalis. Ciona savignyi differs from all other haplotypes by 13–16%. A previously undescribed but morphologically distinct Ciona sp. found at the Banyuls-sur-Mer site was >10% divergent from all other haplotypes. Although these data arise from a single gene study, they indicate that further elucidation of species relationships within the genus and of the species’ distributions will be needed if continuing invasions and potential reproductive isolation are to be investigated.     

The irish sea: Towards a more effective science strategy

The Irish Sea's distinctive hydrographic features present unique opportunities for research into the complex processes that regulate shelf-sea ecosystems. Such studies are essential in developing capabilities to detect and evaluate change in marine environments. A 1993 review showed almost 230 projects underway on the Irish Sea, spanning all the major fields of marine science. But a large proportion of research projects failed to indicate the purpose of the work; overall, there was a remarkable absence of clarity and specificity in the objectives. Progress in some fields is also hampered by insufficient coordination and cohesion; at present there are no standing arrangements between Ireland and the United Kingdom that provide for bilateral, co-ordination of scientific work in the area. There is clearly a need for a more planned and integrated Irish Sea science programme to provide information for management purposes and also to advance scientific understanding of the components and functions of Irish Sea ecosystems, and how and why they change with time. There is a common belief that the first of these predominantly involves monitoring, and the second research. However, the paper cautions that this is a dubious and unnecessary distinction. A strategy aimed at better integration of research and monitoring (e.g. a framework of linked objectives and targets) could substantially increase the information dividend from current investments in Irish Sea science. Based on a joint Irish/UK review, this paper outlines studies and approaches that are seen as key elements of a future, more relevant and costeffective research programme for the Irish Sea.     

Epidemic Disease and the Catastrophic Decline of Australian Rain Forest Frogs

In the montane rain forests of eastern Australia at least 14 species of endemic, stream-dwelling frogs have disappeared or declined sharply (by more than 90%) during the past 15 years. We review available information on these declines and present eight lines of evidence that collectively suggest that a rapidly spreading, epidemic disease is the most likely responsible agent. The extreme virulence of the putative frog patbogen suggests it is likely exotic to Australian rain forests. We propose that exotic pathogens may be responsible for some recent declines of amphibian populations on other continents and that the intercontinental spread of such pathogens is greatly facilitated by human activities such as the thriving international trade in aquarium fish. Our hypothesis may help explain why some amphibian populations in seemingly pristine environments have mysteriously declined.     

Sexual conflict over sperm ejection in monogamous pairs of kittiwakes<Emphasis Type="Italic"> Rissa tridactyla</Emphasis>

Socially monogamous partners suffer conflicting interests concerning various aspects of reproduction such as parental care, copulation and fertilization. Female black-legged kittiwakes commonly eject their mates' sperm immediately following copulations. Because sperm ejection reduces male sperm competitiveness and paternity assurance, males and females have conflicting interests as regards sperm ejection. Males whose mates ejected their sperm at least once remained longer on their mates' backs after the last insemination which apparently prevented the females from ejecting sperm. These results suggest that compelling females to retain their sperm may be a previously unidentified tactic employed by males to assure their paternity. Females tried to prevent their mates from witnessing sperm ejection by ejecting sperm after their mates departed from the nest. Females were more likely to eject sperm when they terminated the copulations by unbalancing the male. The conflict over sperm ejection was related to the ability of the females to end the copulations which covaried with the body mass of their mates. These findings suggest that conflicts in monogamous pairs also exist over the disposition of sperm.Communicated by C.R. Brown     

A Large-Eddy Simulation Study of the Convective Boundary Layer over Philadelphia during the 1999 Summer NE-OPS Campaign

This study presents a large-eddy simulation (LES) study of the convective boundary layer on August 1, 1999 over Philadelphia, PA during a summer ozone episode. The study is an evaluation of the Colorado State University's Regional Atmospheric Modeling System Version 4.3 (RAMS4.3) with the LES option using Northeast Oxidant and Particulate Study (NE-OPS) data. Simulations were performed with different imposed sensible heat fluxes at the ground surface. The model was initialized with the atmospheric sounding data collected at Philadelphia at 1230 UTC and model integrations continued till 2130 UTC. The resulting mean profiles of temperature and humidity obtained from the LES model were compared with atmospheric soundings, tethered balloon and aircraft data collected during the NE-OPS 1999 field campaign. Also the model-derived vertical profiles of virtual temperature were compared with NE-OPS Radio Acoustic Sounder System (RASS) data while the humidity profiles were compared with NE-OPS lidar data. The comparison of the radiosonde data with the LES model predictions suggests that the growth of the mixing layer is reasonably well simulated by the model. Overall, the agreement of temperature predictions of the LES model with the radiosonde observations is good. The model appears to underestimate humidity values for the case of higher imposed sensible heat flux. However, the humidity values in the mixing layer agree quite well with radiosonde observations for the case of lower imposed sensible heat flux. The model-predicted temperature and humidity profiles are in reasonable agreement with the tethered balloon data except for some small overestimation of temperature at lower layers and some underestimation of humidity values. However, the humidity profiles as simulated by the model agree quite well with the tethered balloon data for the case of lower imposed sensible heat flux. The model-predicted virtual temperature profile is also in better agreement with RASS data for the case of lower imposed sensible heat flux. The model-predicted temperature profile further agrees quite well with aircraft data for the case of lower imposed heat flux. However, the relative humidity values predicted by the model are lower compared with the aircraft data. The model-predicted humidity profiles are only in partial agreement with the lidar data. The results of this study suggest that the explicitly resolved energetic eddies seem to provide the correct forcing necessary to produce good agreement with observations for the case of an imposed sensible heat flux of 0.1 K m s^–1 at the surface.     

Environmental risk assessment of metals contaminated soils at silvermines abandoned mine site,Co Tipperary,Ireland

A centuries long history of mining and mineral processing has resulted in elevated Cd, Pb and Zn soil concentrations in the vicinity of the Silvermines abandoned mine site (AMS), Co. Tipperary, Ireland. A process for preliminary evaluation of environmental risk was developed and implemented. Potential pathways of metal compound transport and deposition were mapped and used to optimise the subsequent site investigation. Elevated soil metals are shown to be predominantly in areas where metal deposition in soil is associated with water related pathways (surface runoff, seasonal groundwater seepage and floodplains). Extensive areas of soil in the surrounding district are classified as contaminated on the basis of Cd, Pb and Zn concentrations, both total and potential bioavailable (EDTA-extractable). The most affected areas, with metal concentrations in soil comparable with that within the AMS, were floodplains located 2–3 km downstream from the site. Assessment of the sequential effects on grass and grazing animals indicates that Pb poses the greatest risk due to its high toxicity and high concentrations in soil (more than 10 000 mg kg^–1). Within floodplain areas grazing cattle may intake a lethal dose of Pb. On the basis of the investigation an approach to risk assessment was developed which allowed quantified assessment of the risks related to individual metals, areas of contamination and contamination targets.     

Ruffed grouse brood habitat on reclaimed surface mines in West Virginia

Human-imprinted ruffed grouse (Bonasa umbellus) chicks were used to evaluate grouse brood food and cover conditions on reclaimed surface mines in northern West Virginia. Reclaimed surface-mined areas did not provide the quality of habitat for ruffed grouse chicks that unmined land provided. On the surface-mined areas, grasslegume reclamation provided the poorest cover and next to the lowest feeding rates. Of the surface-mined areas a 25-year-old reclaimed mine planted to autumn olive had canopy provided a more favorable micro-climate for insects and herbaceous vegetation was established around the edge. Planting rows of shrubs in addition to the current practice of planting grasses and legumes on surface-mined areas is suggested to create ruffed grouse brood habitat.