Bacterial community structure of Tricholoma matsutake stipe soil by high-throughput sequencing北大核心CSCD

In order to understand the interaction between microorganisms in soil attached to the stipes of Tricholoma matsutake, we utilized high-throughput sequencing technology using an Illumina HiSeq 2500 System (San Diego, CA, USA) to explore the bacterial community structure in such soils and analyzed the effects of microorganisms on the formation and growth of T. matsutake. A total of 6 730 sequences were obtained from the samples, and these sequences were clustered into 928 operational taxonomic units (OTUs) at a 97% similarity level. In addition, these OTUs were grouped into 22 bacterial phyla (including 62 classes, 90 orders, 162 families, and 275 genera) and 2 archaeal phyla (including 4 classes, 6 orders, 7 families, and 8 genera). Proteobacteria was the dominant phylum present in all the samples, and these bacteria were significantly more abundant in soils attached to stipe of T. matsutake than they were in the control samples. Similarly, Beta-proteobacteria were the dominant class, and bacteria in this class were less abundant than they were in the control samples. Moreover, the genus Burkholderia within the Proteobacteria was more abundant in the control samples than in the T. matsutake soil samples. Generally, Proteobacteria, especially the genus Burkholderia, played an important role in the growth of T. matsutake, whereas other bacteria, such as Unknown-Ellin 60, would probably inhibit the growth of T. matsutake. This study showed that bacteria might be involved in the growth of T. matsutake and the formation of its fruiting bodies, but they had no positive relationship with bacterial abundance, which may provide theoretical guidance for the cultivation of T. matsutake. © 2018 Science Press. All rights reserved.     

Cloning and expression of RING-finger E3 ubiquitin ligase CsSDIR1 gene in tea plant (Camellia sinensis)北大核心CSCD

Protein ubiquitination regulates many aspects of plant development and stress response. The RING-finger type E3 ubiquitin ligase SDIR1 (salt and drought induced ring finger 1) gene plays a key role in plant stress response. In this study, the full-length cDNA and the promoter sequences of CsSDIR1 were isolated from tea plants using the RT-PCR technology, and its bioinformatics characteristics were systematically analyzed. The expression patterns of CsSDIR1 in various tissues and in response to cold, drought, salt, and ABA treatments were also investigated by quantitative real-time RT-PCR (qRT-PCR). The sequence of CsSDIR1 contains a complete open reading frame of 831 bp, coding for a 276-long amino acid protein with a molecular weight of (Mr) 30.085 × 103 and a theoretical isoelectric point of 6.54. CsSDIR1 was predicted to be a hydrophobic protein localized on the intracellular membranes. The analysis of the amino acid sequence characteristics showed that CsSDIR1 contains two putative transmembrane domains at the N-terminus and a C3H2C3 RING-finger domain at the C-terminus; it shares high similarity with other plants' SDIR1, and has the closest relationship to Actinidia sinensis. A cis-acting regulatory elements prediction showed that the CsSDIR1 promoter contains many cis-acting elements, especially drought and salt stress response elements. The qRT-PCR analysis indicated that the CsSDIR1 gene has a high expression level in stems, followed by roots, leaves, and flowers; the expression of the CsSDIR1 gene is up-regulated by ABA, salt, and drought treatments, whereas it is down-regulated in response to cold stress. These results demonstrated that the CsSDIR1 gene might be involved in the plant stress response of tea trees. © 2018 Science Press. All rights reserved.     

Identification of Bacillus methylotrophicus and its application in preventing fly maggot production in the environment北大核心CSCD

This research aimed to screen Bacillus spp. to prevent the production of fly maggot on kitchen wastes from soil in the experimental bases of the South China Agricultural University. A nutrient-rich medium was used to isolate the Bacillus spp. with high temperature treatment. The seventeen Bacillus strains were obtained and assigned to three groups by using Insertion Sequence based PCR (IS-PCR) DNA fingerprinting patterns. The homology of the 16S rDNA gene was 100% between Group I and Bacillus methylotrophicus CBMB 205T, 99.61% between Group II and Bacillus aerophilus 28KT, and 99.87% between Group III and Bacillus cereus ATCC 14579T. The results of kitchen waste tests proved that the representative bacteria of Group I RF2 had the ability to prevent fly maggot production on kitchen wastes. Furthermore, the results of physiological and biochemical tests, carbon utilization tests, and antagonists against plant pathogen tests showed that the bacteria from Group I RF2 had the ability to decompose glucose into pyruvate and then decarboxylate pyruvate to diacetyl under alkaline conditions, convert ammonia to intracellular amino acids or other kinds of nitrogenous compounds, use many kinds of carbon source for self-growth, and be antagonistic against plant pathogenic rice sheath blight disease, banana fusarium wilt, and Fusarium oxysporum. Besides, the bacteria from RF2 could secret organic acids to dissolve insoluble phosphate [Ca3(PO4)2] for its own growth by decreasing the pH. Group I RF2 was a strong plant-promotion bacterium, and had good prospects of application for preventing fly maggot production on kitchen wastes. © 2018 Science Press. All rights reserved.     

Discovery of novel halogenase genes using sequence-driven metagenomics approach北大核心CSCD

It is of great significance to ability to obtain new natural products with diverse activities through the study of soil microorganisms. However, less than 1% of the total soil microorganisms can be cultured under laboratory conditions, thus limiting the discovery of new compounds. Metagenomics, by which the genomic DNA of soil microorganisms can be extracted and expressed in heterologous hosts, provides a new approach for the functional study of soil microorganisms. Natural halides have good bioactivities, including antibacterial and antitumor activities. Halogenases play an important role in biosynthesis, and introducing bioactivities of halogenated compounds. To investigate the potential of halogenated compounds production from soil microorganisms, a soil metagenomic library was screened by PCR for clones harboring reduced flavin adenine dinucleotide (FADH2) - dependent halogenase genes. Sixty-five positive clones were identified from the library, and the amino acid sequences of halogenase genes within the positive clones were analyzed. Phylogenetic analyses revealed that more than 85% of these genes were separated from known halogenases to form new clades in the phylogenetic tree; moreover the soilderived halogenases showed high diversity. By further biosynthetic gene analysis of the positive clones, a new type I polyketide biosynthetic gene sequence was identified, which is probably related to the biosynthesis of the halogenated type I polyketide. In conclusion, novel and diverse halogenase genes were identified on sixty-five metagenomic clones using a sequence-driven metagenomic approach, laying a foundation for the further discovery of novel natural halides biosynthetic gene clusters and halides. © 2018 Science Press. All rights reserved.     

Enhancing transverse mixing in streams with submerged vanes

In order to maintain the water quality of moving streams, it is essential to know the process of pollutant mixing. The transverse mixing is very important which is needed to be modeled to understand mixing phenomenon. It was observed that transverse mixing is a strong function of secondary currents, thus, submerged vanes, which are aerofoil skewed at angle of 10°–40° with respect to flow, generate transverse circulations that can be utilized to induce secondary currents in the flow to enhance transverse mixing. Present study is an attempt to utilize submerged vanes as an instrument to enhance the transverse mixing by incorporating various vane configurations. In order to study the effect of vane generated circulations on transverse mixing, experimentations were conducted on three vane sizes and for various row arrangements of vanes attached to bed. An attempt is made to investigate the effect of submerged vane size and rows on transverse velocity, concentration profile and transverse mixing coefficient. It was observed by measurement of concentration profile that transverse mixing was more enhanced for submerged vanes of higher height. It was also observed that as the number of rows is proportional to the transverse mixing. By measuring the transverse velocity profile, it was observed that more and more fluid was advected in transverse direction for higher rows of vanes. By utilizing the observed transverse mixing coefficients, number of vane rows and relative height of vane, a predictor was derived to predict transverse mixing coefficient in the presence of submerged vane rows. It was observed that the derived predictor shows a fair amount of agreement in the result predicted.     

现代城市的理想模式--生态城市

从分析我国城市生态问题出发,指出建设生态城市是城市发展的方向,就生态城市的含义、特点,以及建设生态城市实施措施做了探索,以期推动我国生态城市建设工作的开展。     

Technical efficiency analysis of the conversion of cropland to forestland program in Jiangxi,Shaanxi, and Sichuan

Conversion of Cropland to Forestland Program (CCFP) has greatly impacted China’s agricultural sector, and more specifically rural farmers. While changes in living standards as a result of the implementation of the CCFP have been analyzed, little research has been conducted regarding the impacts of such policies on farming operations. As agriculture contributes nearly 10% of national GDP, it is important to analyze the implications of policies on a national industry. An input-oriented data envelopment analysis (DEA) model was used to examine the technical efficiency of farming operations following implementation of the CCFP, using survey data from farmers in Jiangxi, Shaanxi, and Sichuan provinces. Additionally, the impact of factors such as urbanization, age and education, and land fragmentation was examined with respect to farming operational efficiency. Scale inefficiency was found to have the greatest effect on overall inefficiency in farming operations in comparison to pure technical inefficiency, which was largely influenced by the presence and degree of land fragmentation of land holdings. Findings can be used to inform national land-use policies facilitating land fragmentation in China and address gaps in existing broader level studies that utilize non-parametric approaches to examine the technical efficiency of Chinese farmers affected by the CCFP.     

Physical factors negatively affecting evaluation of long-term biodegradation experiments of polychlorinated biphenyls

Behaviour of PCB added in the form of a technical mixture (Delor 106) and [¹⁴C]PCB 77 into different aqueous model cultivation media in long-term experiments was studied. The work was focused on monitoring PCB recovery from liquid media in the absence of micro-organisms. GC-ECD and radioanalysis were utilised for determination of PCB in the examined systems. Strong relations between duration of experiments, composition of media, degree of chlorination of biphenyls, and recovery of PCB were found. The lowest yields of PCB were observed for the extracts from model solutions based on N-limited cultivation media without veratryl alcohol and Tween 80. The addition of these components, mainly of Tween 80, caused a significant increase of PCB recoveries.