Thioredoxins in bacteria: functions in oxidative stress response and regulation of thioredoxin genes

Thioredoxins fulfill a number of different important cellular functions in all living organisms. In bacteria, thioredoxin genes are often regulated by external factors. In turn, thioredoxins influence the expression of many other genes. The multiple and important functions of thioredoxins in cells necessitate to appropriately adjust their level. This review outlines different strategies that have evolved for the regulation of bacterial thioredoxin genes. It also summarizes effects of thioredoxins on gene regulation and presents a recent model for a redox-dependent gene regulation that is mediated by thioredoxins.     

Nitrous oxide emissions from a dung heap measured by chambers and plume methods

Dung heaps provide a large, spatial and temporal variable, source of the greenhouse gas N₂O. In this paper emission rates measured by static and flow through chamber methods, which enclose only a small area of the heap, were compared with Gaussian plume and tracer ratio methods, which measure the emissions from the entire dung heap. The dung heap was a 300 m³ heap, composed of material from nearby cattle sheds. From the flow through and static chambers it was estimated that the dung heap emitted 315 and 51 g N₂ON m⁻³ day⁻¹, respectively. The spatial variability between the chambers and chamber methods was large. Standard deviations of the mean fluxes were >75% of the average flux. The smaller emissions were measured on the slopes of the heap and the larger emissions on the ridge. The plume of N₂O was measured downwind of the dung heap by (1) tunable diode laser spectroscopy and calculation of the N₂O source strength of the heap using Gaussian plume theory and (2) tracer ratio method releasing SF₆ from the heap summit and capture in Tedlar bags downwind with subsequent analysis by gas chromatography. The Gaussian plume theory calculated an average N₂O source strength of 5.3 g N₂ON m⁻³ day⁻¹ (1.4–6.7 g N₂ON m⁻³ day⁻¹). The tracer ratio method calculated a slightly larger average emission rate of 14.4 g N₂ON m⁻³ day⁻¹ (7.4–38.6 g N₂ON m⁻³ day⁻¹). Both methods were successfully validated by point release of SF₆ and N₂O, which suggests that the micrometeorological methods provided a good estimate of the source strength of the heap, whereas the few chamber measurements overestimated its source strength.     

Epigeic Collembola in winter wheat under organic,integrated and conventional farm management regimes

Community characteristics of Collembola assemblages in conventional, integrated and organic fields of winter wheat were compared among three randomly chosen areas in England using analysis of similarities, cluster analysis, multi-dimensional scaling and several measures of diversity and evenness. Indicator values were used to identify indicator species. Significant differences were found in the abundance of most species and in community structure among the three geographical regions but few differences between the farming regimes were significant. Despite a lack of significant differences among regimes, Entomobrya multifasciata and Isotomurus spp. were consistently, although not significantly more common in conventional than organic fields whereas the opposite was true for Isotoma viridis and Isotoma notabilis. Farming regime significantly affected the abundance of Sminthurinus elegans and Sminthurus viridis but the effect differed between geographical regions. Community composition and species dominance were influenced by farming regime, but no species were indicative of the different farming systems, as most occurred ubiquitously in all fields. Organically and conventionally farmed fields were found not to differ significantly from each other in community composition, but both differed from integrated fields. These findings are compared with the results from other recent European studies of the effects of farming systems on arthropods and their wider ecological implications are discussed.     

Effects of ethylenediurea and ozone on the antioxidative systems in beans (Phaseolus vulgaris L.)

To study the biochemical mechanism of EDU protection against ozone injury, peroxidase, ascorbate-dependent peroxidase, and catalase activities, and the contents of ascorbic acid, dehydroascorbic acid, malondialdehyde and soluble protein were measured in Phaseolus vulgaris L. cv. Lit exposed to ozone and ethylenediurea (EDU) in open-top chambers. Plants not treated with EDU showed foliar bronzing due to ozone, while EDU-treated plants were not affected. EDU application modified the reaction of biochemical parameters to ozone. Soluble protein content was elevated by EDU. Peroxidase activity increased with ozone exposure in untreated plants only, while ascorbate-dependent peroxidase activity was lower in EDU treated plants. Catalase activity decreased in EDU-untreated plants. The ratio of ascorbic acid to dehydroascorbic acid was significantly increased in EDU treated plants. These results suggest that EDU might induce ascorbic acid synthesis and therefore provide the plant with a very potent antioxidant. Or the content of hydrogen peroxide was reduced due to other unknown processes and caused a delay in foliar senescence, regardless of whether these processes were ozone-induced or due to natural aging processes.     

From critical levels to critical loads for ozone: a discussion of a new experimental and modelling approach for establishing flux-response relationships for agricultural crops and native plant species

Present critical levels for ozone (O3) for protecting vegetation against adverse effects are based on exposure-response relationships mainly derived from open-top chamber experiments and are expressed as an Accumulated exposure Over a Threshold of 40 ppb (AOT40). In that context with a revision of the UN (United Nations)-ECE (Economic Commission for Europe) Gothenburg protocol, AOT40 values should be replaced by flux-oriented quantities, i.e. in the end by critical loads. At present, the database for the derivation of critical loads for O3 is extremely inadequate. Furthermore, the currently available flux-response relationships are also derived from open-top chamber experiments. The use of a relationship for spring wheat in a risk assessment for an agricultural site in Hesse, Germany, demonstrates in principle, the applicability of the critical load concept for O3. Comparisons of diurnal variation of stomatal uptake and AOT40 showed that a major part of toxicologically effective stomatal uptake occurred before noon whereas the AOT40 values were dominated by the O3 concentrations during afternoon. In other words, the AOT40 exposure index do not adequately address the O3 burden during hours when plants are sensitive to O3 uptake. However, due to the differences in radiation, air temperature and humidity between the chamber and the ambient microclimates, a derivation of flux-response relationships from chamber experiments is likely to be questionable, especially for species rich ecosystems: Here, without any changes in the pollution climate, significant modifications of species composition as well as an earlier beginning of the growing season has been previously observed. To overcome the problems associated with chamber-derived flux-response relationships, a new experimental and modelling concept, was developed. The approach, briefly described in this paper, combines methods in air pollution toxicology and micrometeorology. As an analogy to the free-air fumigation concept, O3 is released into the air by an injection system above the plant canopy. The assessment of dispersion and surface deposition of O3 released is based on Lagrangian trajectory modelling. Depending on wind direction and velocity, atmospheric stratification and surface roughness, without any disturbance of the microclimate and micrometeorology, several sub-areas can be identified around the source position with differing deposition rates above the ambient level. Taking into account the actual O3 background deposition, deposition rates and vegetation responses observed in these sub-areas can easily be used to derive flux-effect relationships under ambient conditions and more realistic limiting values to protect our environment.     

Determination of vanillin in vanilla perfumes and air by capillary electrophoresis

The present study investigated capillary electrophoretic detection of vanillin in vanilla perfume and air. An UV-absorbance detector was used in a home-made capillary electrophoretic instrument. A fused silica capillary (outer diameter: 364 μm, inner diameter: 50 μm) was used as a separation capillary, and a high electric voltage (20 kV) was applied across the two ends of the capillary. Total length of the capillary was 70 cm, and the effective length was 55 cm. Experimental results showed that the vanillin peak was detected at about 600, 450, and 500 seconds when pH of running buffers in CE were 7.2, 9.3, and 11.5, respectively. The peak area of vanillin was proportional to its concentration in the range of 0–10^?2 mol/L. The detection limit was about 10^?5 mol/L. Vanillin concentration in a 1% vanilla perfume sample was determined to be about 3×10^?4 mol/L, agreed well with that obtained by a HPLC method. Furthermore, determination of vanillin in air by combination of CE and active carbon adsorption method was investigated     

Influence of grain size on species-habitat models

High resolution remote sensing data facilitate the use of small-scale habitat features such as trees or hedges in the analysis of species-habitat relationships. Such data potentially enable more accurate species-habitat mapping than lower resolution data. Here, for the first time, we systematically investigated this hypothesis by altering the spatial resolution from 1 m up to 1000 m grain size in species-habitat models of 13 bird species. The study area covered the Nidda river catchment in central Germany, a large heterogeneous landscape of 1620 km². A high resolution habitat map of the area was converted to coarser spatial and thematic resolutions in seven steps. We investigated how model performance responded to grain size, and we compared the differential effects of spatial resolution and thematic resolution on model performance. Explained deviance (D²) of the bird models generally decreased with coarser spatial resolution of the data, although it did not decrease monotonically in all species. On average across all species, model D² decreased from 41.5 at 1 m grain size to 15.9 at 1000 m grain size. Ten species were best modelled at 1 m, two species at 3 m and one species at 32 m grain size. Model performance degraded continuously with increasing grain size, both in habitat generalist and habitat specialist bird species, and was systematically lower in habitat generalists. The higher model performance observed at finer grain sizes was most likely caused by the combination of three factors: (1) high spatial accuracy of bird records and (2) a more precise location and delineation of habitat features and, (3) to a lesser degree, by more habitat types differentiated in maps of finer resolution. We conclude that higher spatial and thematic resolution data can be essential for deriving accurate predictions on bird distribution patterns from species-habitat models. Especially for bird species that are sensitive to specific land-use types or to small-scaled habitat features, a grain size of 1-3 m seems most promising.     

Toxicology of perfluorinated compounds

Perfluorinated compounds [PFCs] have found a wide use in industrial products and processes and in a vast array of consumer products. PFCs are molecules made up of carbon chains to which fluorine atoms are bound. Due to the strength of the carbon/fluorine bond, the molecules are chemically very stable and are highly resistant to biological degradation; therefore, they belong to a class of compounds that tend to persist in the environment. These compounds can bioaccumulate and also undergo biomagnification. Within the class of PFC chemicals, perfluorooctanoic acid and perfluorosulphonic acid are generally considered reference substances. Meanwhile, PFCs can be detected almost ubiquitously, e.g., in water, plants, different kinds of foodstuffs, in animals such as fish, birds, in mammals, as well as in human breast milk and blood. PFCs are proposed as a new class of 'persistent organic pollutants'. Numerous publications allude to the negative effects of PFCs on human health. The following review describes both external and internal exposures to PFCs, the toxicokinetics (uptake, distribution, metabolism, excretion), and the toxicodynamics (acute toxicity, subacute and subchronic toxicities, chronic toxicity including carcinogenesis, genotoxicity and epigenetic effects, reproductive and developmental toxicities, neurotoxicity, effects on the endocrine system, immunotoxicity and potential modes of action, combinational effects, and epidemiological studies on perfluorinated compounds).