A pattern-oriented modelling approach to simulating populations of grey partridge

A number of wildlife species including the grey partridge (Perdix perdix) have shown dramatic post-war population declines. Multiple drivers have been proposed as reasons for the declines, for example agrochemical use and intensification of agricultural practices, climate, predation, and changes in landscape structure. These drivers may interact in non-linear ways and are inherently spatio-temporal in nature. Therefore models used to investigate mechanisms should be spatio-temporal, of proper scale, and have a high degree of biological realism. Here we describe the development and testing of an agent-based model (ABM) of grey partridge using a well documented pre-decline historical data set in conjunction with a pattern-oriented modelling (POM) approach. Model development was an iterative process of defining performance criteria, testing model behaviour, and reformulating as necessary to emulate system properties whilst ensuring that internal mechanisms were biologically realistic. The model was documented using ODdox, a new protocol for describing large agent-based models. Parameter fitting in the model was achieved to within ±2% accuracy for 15 out of 17 field data patterns used, and within 5% for the remaining two. Tests of interactions between input parameters showed that 62% of parameter pairs tested had significant interactions underlining the complex nature of the model structure. Sensitivity analysis identified chick mortality as being the most sensitive factor, followed by adult losses to hunting and adult overwinter mortality, agreeing in general with previous partridge models. However, the ABM used here could separate individual drivers, providing a better understanding of the underlying mechanisms behind population regulation, and allowing factors to be compared directly. The ABM used is rich in output signals allowing detailed testing and refinement of the model. This approach is particularly suited to systems such as the partridge system where data for comparison to model outputs is readily available. Despite the accurate fit between historical data and model output, making use of the predictive power of the approach the model requires further calibration and testing under modern field conditions.     

A population model for the peach fruit moth, Carposina sasakii Matsumura (Lepidoptera: Carposinidae), in a Korean orchard system

A population model for the peach fruit moth, Carposina sasakii Matsumura, was constructed to understand the population dynamics of this pest species and to develop an effective management strategy for various orchard (apple, peach, apple + peach) systems. The model was structured by the five developmental stages of C. sasakii: egg, larva, pupa, larval-cocoon (overwintering larva), and adult. The model consisted of a series of component models: (1) a bimodal spring adult emergence model, (2) an adult oviposition model, (3) stage emergence models of eggs, larvae, and pupae, (4) a larval survival rate model in fruits, (5) a larval-cocoon formation model, and (6) an insecticide effect model. Simulations using the model described the typical patterns of C. sasakii adult abundance in various orchard systems well, and was specific to the composition of host plants: three adult abundance peaks (first peak, mid-season peak, and last peak) a year with decreased peaks after the first peak in monoculture orchards of late apple, two adult peaks a year with a much higher last peak in monoculture orchards of early peach, and three adult peaks a year with much higher later peaks in mixed orchards of late apple and early peach. The average deviation between model outputs and actual records for first and second adult peak dates was 2.8 and 3.9 d, respectively, in simulations without an insecticide effect. The deviation decreased when insecticide effects were incorporated into the model. We also performed a sensitivity analysis of our model, and suggest possible applications of the model.     

Estimating the critical phosphorus loading of shallow lakes with the ecosystem model PCLake: Sensitivity, calibration and uncertainty

There is a vast body of knowledge that eutrophication of lakes may cause algal blooms. Among lakes, shallow lakes are peculiar systems in that they typically can be in one of two contrasting (equilibrium) states that are self-stabilizing: a ‘clear’ state with submerged macrophytes or a ‘turbid’ state dominated by phytoplankton. Eutrophication may cause a switch from the clear to the turbid state, if the P loading exceeds a critical value. The ecological processes governing this switch are covered by the ecosystem model PCLake, a dynamic model of nutrient cycling and the biota in shallow lakes. Here we present an extensive analysis of the model, using a three-step procedure. (1) A sensitivity analysis revealed the key parameters for the model output. (2) These parameters were calibrated on the combined data on total phosphorus, chlorophyll-a, macrophytes cover and Secchi depth in over 40 lakes. This was done by a Bayesian procedure, giving a weight to each parameter setting based on its likelihood. (3) These weights were used for an uncertainty analysis, applied to the switchpoints (critical phosphorus loading levels) calculated by the model. The model was most sensitive to changes in water depth, P and N loading, retention time and lake size as external input factors, and to zooplankton growth rate, settling rates and maximum growth rates of phytoplankton and macrophytes as process parameters. The results for the ‘best run’ showed an acceptable agreement between model and data and classified nearly all lakes to which the model was applied correctly as either ‘clear’ (macrophyte-dominated) or ‘turbid’ (phytoplankton-dominated). The critical loading levels for a standard lake showed about a factor two uncertainty due to the variation in the posterior parameter distribution. This study calculates in one coherent analysis uncertainties in critical phosphorus loading, a parameter that is of great importance to water quality managers.     

Biotope mapping in an urban environment and its implications for urban management in Turkey

The biotopes of ecological importance in urban environments worldwide are under the pressure of many negative factors such as urbanization, air pollution, human disturbance, etc. Biotope mapping is an important tool for urban planning and management and of importance for the protection of biotopes for future generations. The biotopes in Antalya city of Turkey, which has faced to a great population pressure due to tourism developments and immigration in the last two decades, were investigated in this study. The selective biotope mapping method was used and major biotope sites were determined by the interpretation of panchromatic aerial photographs, assisted with field verifications. A sensitivity assessment based on two parameters, the rarity and the re-establishment ability of biotopes, was made as it was considered important information for urban planning and management. According to the results of the assessment, the majority of biotopes in Antalya city were found to be very sensitive or sensitive. It was concluded that insufficient legislation, the lack of an ecological urban planning approach and poor urban management are the most important reasons for today's pressures on urban biotopes in Turkey.     

水和废水中酞酸酯的测定

建立了Zorbax-CN柱和含0.1％异丙醇的正己烷为洗脱液,在224nm处紫外检测的液相色谱系统,并应用该系统测试了北京市工业废水、地面水、地下水和饮用水中的酞酸酯。水样经正己烷萃取后,不需净化（如柱层析）即可直接进入液相色谱系统进行分析。方法检出限：酞酸二甲酯1.0ng;酞酸二乙酯0.4ng;酞酸二正丁酯、酞酸二正辛酯和酞酸－双-（2-乙基己基）酯为0.2ng。定量分析的线性范围为0.1～450ppb,回收率为70～110％,5～7次平行测试的变异系数在10％以内。     

Simulating the fate of Florida Snowy Plovers with sea-level rise: Exploring research and management priorities with a global uncertainty and sensitivity analysis perspective

Changes in coastal habitats due to sea-level rise provide an uncertain, yet significant threat to shoreline dependent birds. Rising sea levels can cause habitat fragmentation and loss which can result in considerable reduction in their foraging and nesting areas. Computational models and their algorithmic assumptions play an integral role in exploring potential mitigation responses to uncertain and potentially adverse ecological outcomes. The presence of uncertainty in metapopulation models is widely acknowledged but seldom considered in their development and evaluation, specifically the effects of uncertain model inputs on the model outputs. This paper was aimed to (1) quantify the contribution of each uncertain input factor to the uncertainty in the output of a metapopulation model which evaluated the effects of long-term sea-level rise on the population of Snowy Plovers (Charadrius alexandrinus) found in the Gulf Coast of Florida, and (2) determine the ranges of model inputs that produced a specific output for the purpose of formulating environmental management decisions. This was carried out by employing global sensitivity and uncertainty analysis (GSA) using two generic (model independent) methods, the qualitative screening Morris method and a quantitative variance-based Sobol’ method coupled with Monte Carlo filtering. The analyses were applied to three density dependence scenarios: assuming a ceiling-type density dependence, assuming a contest-type density dependence, and assuming that density dependence is uncertain as to being ceiling- or contest-dependent. The sources of uncertainty in the outputs depended strongly on the type of density dependence considered in the model. In general, uncertainty in the outputs highly depended on the uncertainty in stage matrix elements (fecundity, adult survival, and juvenile survival), dispersal rate from central areas with low current populations (the “Big Bend” area of Florida) to the northern, panhandle populations, the maximum growth rate, and density dependence type. Our results showed that increasing the maximum growth rate to a value of 1.2 or larger will increase the final average population of Snowy Plovers assuming a contest-type density dependence. Results suggest that studies that further quantify which density dependence relationship best describes Snowy Plover population dynamics should be conducted since this is the main driver of uncertainty in model outcomes. Furthermore, investigating the presence of Snowy Plovers in the Big Bend region may be important for providing connection between the panhandle and peninsula populations.     

基于贝叶斯网络的养老院火灾风险评估方法研究

为预防养老院火灾事故,结合事故树法(FTA)和贝叶斯网络法(BN),建立了一套养老院火灾风险定量评估模型。首先,采用事故树法建立潜在的养老院火灾事故场景;其次,考虑到养老院火灾事故场景中不确定因素的影响,将事故树模型转化为贝叶斯网络模型,并结合有人员伤亡的养老院火灾事故发生发展实际优化模型;最后,以某市养老院为例,结合调研、文献及统计数据确定先验概率及条件概率,并用GENIE 2.0软件实现贝叶斯图形化,分析验证该模型逻辑可行性。结果表明:通过该模型和方法,不仅可以预测养老院火灾事故中各场景发生发展概率,还能对各风险因素敏感度和最大致因链进行分析,提高了风险因素辨识和评价的准确性,可以为养老院火灾风险分析和防控提供参考。     

Life cycle assessment of energy from waste via anaerobic digestion: A UK case study

Particularly in the UK, there is potential for use of large-scale anaerobic digestion (AD) plants to treat food waste, possibly along with other organic wastes, to produce biogas. This paper presents the results of a life cycle assessment to compare the environmental impacts of AD with energy and organic fertiliser production against two alternative approaches: incineration with energy production by CHP and landfill with electricity production. In particular the paper investigates the dependency of the results on some specific assumptions and key process parameters. The input Life Cycle Inventory data are specific to the Greater London area, UK. Anaerobic digestion emerges as the best treatment option in terms of total CO₂ and total SO₂ saved, when energy and organic fertiliser substitute non-renewable electricity, heat and inorganic fertiliser. For photochemical ozone and nutrient enrichment potentials, AD is the second option while incineration is shown to be the most environmentally friendly solution. The robustness of the model is investigated with a sensitivity analysis. The most critical assumption concerns the quantity and quality of the energy substituted by the biogas production. Two key issues affect the development and deployment of future anaerobic digestion plants: maximising the electricity produced by the CHP unit fuelled by biogas and to defining the future energy scenario in which the plant will be embedded.