Extra-pair paternity and the opportunity for sexual selection in a socially monogamous bird (Dendroica petechia)

We used multi-locus DNA fingerprinting to characterise the genetic mating system of the socially monogamous yellow warbler (Dendroica petechia). Over 2 years there were no instances of brood parasitism, but 59% of families (n = 90) contained extrapair sired young and 37% of offspring (n = 355) were of extra-pair paternity. Most hypotheses for extra-pair mating in monogamous species assume a paternity benefit to extra-pair sires, and focus on the benefit(s) to females. However, the assumption of male benefit has been little tested. Among yellow warblers, known extra-pair sires were just as likely to be cuckolded as any male in the population, and there was at least one reciprocal exchange of extra-pair paternity. Nevertheless, among known extra-pair sires, the paternity gains from extra-pair paternity were, on average, greater than the losses in their own families. These results show there is a paternity benefit to certain males. However, the benefit is not absolute but relative and therefore more difficult to measure. The results also suggest that patterns of extra-pair fertilisation are not determined by female choice alone. Most confirmed extra-pair mates were territorial neighbours, but some resided as far as three territories apart, and greater spatial separation was implied in other cases. Thus, the opportunity for extra-pair mating is great. We estimate that as a result of extra-pair fertilisations, variance in male mating success is increased somewhere between 3-fold and 15-fold over that which would result from within-pair reproduction alone. These findings affirm the potential importance of extra-pair reproduction for sexual selection in monogamous species and they support earlier suggestions that extra-territorial forays by male yellow warblers are for the purpose of extra-pair mating.     

A new synergetic paradigm in environmental numerical modeling: Hybrid models combining deterministic and machine learning components

A new type of environmental numerical models, hybrid environmental numerical models (HEMs) based on combining deterministic modeling and machine learning components, is introduced and formulated. Conceptual and practical possibilities of developing HEM, as an optimal synergetic combination of the traditional deterministic/first principles modeling (like that used for solving PDEs on the sphere representing model dynamics of global climate models) and machine learning components (like accurate and fast neural network emulations of model physics or chemistry processes), are discussed. Examples of developed HEMs (hybrid climate models and a hybrid wind–wave ocean model) illustrate the feasibility and efficiency of the new approach for modeling extremely complex multidimensional systems.     

A Bayesian strategy for combining predictions from empirical and process-based models

We present a strategy for using an empirical forest growth model to reduce uncertainty in predictions made with a physiological process-based forest ecosystem model. The uncertainty reduction is carried out via Bayesian melding, in which information from prior knowledge and a deterministic computer model is conditioned on a likelihood function. We used predictions from an empirical forest growth model G-HAT in place of field observations of aboveground net primary productivity (ANPP) in a deciduous temperate forest ecosystem. Using Bayesian melding, priors for the inputs of the process-based forest ecosystem PnET-II were propagated through the model, and likelihoods for the PnET-II output ANPP were calculated using the G-HAT predictions. Posterior distributions for ANPP and many PnET-II inputs obtained using the G-HAT predictions largely matched posteriors obtained using field data. Since empirical growth models are often more readily available than extensive field data sets, the method represents a potential gain in efficiency for reducing the uncertainty of process-based model predictions when reliable empirical models are available but high-quality data are not.     

The application of geographic information systems to geochemical studies in Jamaica

The Centre for Nuclear Sciences (CNS) uses a raster based geographic information system (GIS), integrated with a relational database to store information on point sampled data, including concentrations of over 50 elements and/or ions in a variety of sample materials. These data are filtered in the GIS to create surface layers and are assigned colours according to percentile ranges allowing visual inspection to be used to identify significant features and trends. The database currently contains raster map layers for soils and geologic features, point site data for water and air, and vector data for roads, rivers and streams. While data are still being added to the database interesting results are already being obtained and a few instances where the GIS was used to assist in the data interpretation are reported.     

Shifts in the spatio-temporal growth dynamics of shortleaf pine

Previous studies focusing on the growth history of Pinus echinata at the edge of its geographical range have suggested that changes in growth correspond to climatic and non-climatic (e.g., anthropogenic) factors. We employ a regime-dependent state-space model that allows us to detect and characterize the changes in tree growth dynamics over space and time using readily available dendrochronological and climatic data in the presence of various sources of uncertainty. We utilize methods common in atmospheric sciences but relatively unknown in ecology and forestry to develop a hierarchical model for tree growth and describe the growth dynamics. The utility of such methods for addressing ecological problems will grow as more high dimensional spatio-temporal processes are considered and datasets become more readily available.     

Rethinking Community-Based Conservation

Abstract:  Community-based conservation (CBC) is based on the idea that if conservation and development could be simultaneously achieved, then the interests of both could be served. It has been controversial because community development objectives are not necessarily consistent with conservation objectives in a given case. I examined CBC from two angles. First, CBC can be seen in the context of paradigm shifts in ecology and applied ecology. I identified three conceptual shifts—toward a systems view, toward the inclusion of humans in the ecosystem, and toward participatory approaches to ecosystem management—that are interrelated and pertain to an understanding of ecosystems as complex adaptive systems in which humans are an integral part. Second, I investigated the feasibility of CBC, as informed by a number of emerging interdisciplinary fields that have been pursuing various aspects of coupled systems of humans and nature. These fields—common property, traditional ecological knowledge, environmental ethics, political ecology, and environmental history—provide insights for CBC. They may contribute to the development of an interdisciplinary conservation science with a more sophisticated understanding of social-ecological interactions. The lessons from these fields include the importance of cross-scale conservation, adaptive comanagement, the question of incentives and multiple stakeholders, the use of traditional ecological knowledge, and development of a cross-cultural conservation ethic.     

Use of Substitute Species in Conservation Biology

Abstract:  In conservation biology, researchers often want to study the reasons why an endangered population is faring poorly but are unable to study it directly for logistical or political reasons. Instead they study a species that substitutes for the one of concern in the hope that it will cast light on the conservation problem. Here we outline the assumptions underlying this approach. Substitutes can be different populations or species and may be chosen because they are similar biologically to the target or representatives of a constellation of species of which the target is one. They also may be used to develop a predictive model to which the conservation target can be related. For substitutes to be appropriate, they should share the same key ecological or behavioral traits that make the target sensitive to environmental disturbance and the relationship between population vital rates and level of disturbance should match that of the target. These conditions are unlikely to pertain in most circumstances and the use of substitute species to predict endangered populations' responses to disturbance is questionable.     

Simple Spatial Modeling Tool for Prioritizing Prescribed Burning Activities at the Landscape Scale

Abstract:   Resources for prescribed fire are frequently insufficient to manage public lands for all conservation and resource management objectives, necessitating prioritization of the application of fire across the landscape within any given year. Defining tradeoffs when applying prescribed fire to large landscapes is problematic not only because of the complexity of weighing competing management objectives at the landscape scale, but also because of the difficult nature of independently applying need-to-burn criteria to large areas. We present a case study of a simple modeling process implemented at Eglin Air Force Base in the Florida Panhandle (U.S.A.) to prioritize the application of prescribed fire. In a workshop setting, managers and biologists identified key conservation criteria and landscape management objectives that drive the application of prescribed fire. Remote sensing and other spatial data were developed to directly or indirectly represent all these criteria. Using geographic information system software, managers and biologists weighted each criterion according to its relative contribution to overall burn prioritization, and individual values for the criterion were scored according to how they influence the need to burn. Subsequently, this process has been validated and modified through ecological monitoring. This modeling process has also been applied to the 77,400-ha Blackwater River State Forest, public land adjacent to Eglin Air Force Base, demonstrating its applicability to lands with varying management priorities. The advantages of this model-based approach for prioritizing prescribed fire include the reliance on accessible, inexpensive software, the development of spatially explicit management objectives, the ease of transferability, and clearly stated assumptions about management that may be tested and reviewed through monitoring and public comment.     

Assessment of groundwater contamination using geographic information systems

In this study two sites were selected in order to investigate groundwater contamination and spatial relationships among groundwater quality, topography, geology, landuse and pollution sources. One site is the Asan area, an agricultural district where pollution sources are scattered and which is mainly underlain by granite of Cretaceous age. The other site is the Gurogu area of Seoul city, an industrial district where an industrial complex and residential areas are located and which is mainly underlain by gneiss of Precambrian age. Groundwater samples collected from these districts were analysed for chemical constituents. An attribute value files of chemical constituents of groundwater and the spatial data layers were constructed and pollution properties were investigated to establish out spatial relationships between the groundwater constituents and pollution sources using geographic information systems (GIS).Relatively high contents of Si and HCO₃ ^– in the groundwater from the Asan area reflect the effect of water–rock interaction whereas high contents of Cl^–, NO₃ ^– and Ca²⁺ in the groundwater from the Gurogu area are due to the pollution of various sources. The significant seasonal variation of SiO₂, HCO₂ ^– and Ca²⁺ contents, and that of Ca²⁺ content were observed in the Asan and the Gurogu areas, respectively. Seasonal variation of pollutants such as Cl^–, NO₃ ^– and SO₄ ^2– was not observed in either area. Pollution over the critical level of the Korean drinking water standard has been investigated from 15 sampling sites out of 40 in the Asan area, and 33 sampling sites out of 51 in the Gurogu area. Pollution by NO₃ ^–, Cl^–, Fe²⁺, Mn²⁺, SO₄ ^2– and Zn²⁺ in the groundwater from the industrial district (Gurogu area) and that of NO₃ , SO₄ ^2– and Zn²⁺ in the groundwater from the agricultural district (Asan area) were observed. The principal pollutant in both areas is NO₃ ^–. Deep groundwater from the Asan area is not yet contaminated with NO₃ ^– except for one site, but most of the shallow groundwater site occurring near the potential point sources is seriously contaminated. From the result of buffering analysis, it seems clear that factories and stock farms are the principal pollution sources in the Asan area. The groundwater from the Gurogu area has already been seriously polluted considering the fact of NO₃ ^– contamination of deep groundwater. Chlorine pollution of shallow groundwater in the Gurogu area was also observed. Spatial relationship between pollution level and its source was clarified in this study by using GIS, which will be applicable to the effective management of groundwater quality.