Complex effects of habitat amount and fragmentation on functional connectivity and inbreeding in a giant panda population

The relationships between habitat amount and fragmentation level and functional connectivity and inbreeding remain unclear. Thus, we used genetic algorithms to optimize the transformation of habitat area and fragmentation variables into resistance surfaces to predict genetic structure and examined habitat area and fragmentation effects on inbreeding through a moving window and spatial autoregressive modeling approach. We applied these approaches to a wild giant panda population. The amount of habitat and its level of fragmentation had nonlinear effects on functional connectivity (gene flow) and inbreeding. Functional connectivity was highest when approximately 80% of the surrounding landscape was habitat. Although the relationship between habitat amount and inbreeding was also nonlinear, inbreeding increased as habitat increased until about 20% of the local landscape contained habitat, after which inbreeding decreased as habitat increased. Because habitat fragmentation also had nonlinear relationships with functional connectivity and inbreeding, we suggest these important responses cannot be effectively managed by minimizing or maximizing habitat or fragmentation. Our work offers insights for prioritization of protected areas.     

Using experimental reintroductions to resolve the roles of habitat quality and metapopulation dynamics on patch occupancy in fragmented landscapes

Declines of species in fragmented landscapes can potentially be reversed either by restoring connectivity or restoring local habitat quality. Models fitted to snapshot occupancy data can be used to predict the effectiveness of these actions. However, such inferences can be misleading if the reliability of the habitat and landscape metrics used is unknown. The only way to unambiguously resolve the roles of habitat quality and metapopulation dynamics is to conduct experimental reintroductions to unoccupied patches so that habitat quality can be measured directly from data on vital rates. We, therefore, conducted a 15-year study that involved reintroducing a threatened New Zealand bird to unoccupied forest fragments to obtain reliable data on their habitat quality and reassess initial inferences made by modeling occupancy against habitat and landscape metrics. Although reproductive rates were similar among fragments, subtle differences in adult survival rates resulted in λ (finite rate of increase) estimations of <0.9 for 9 of the 12 fragments that were previously unoccupied. This was the case for only 1 of 14 naturally occupied fragments. This variation in λ largely explained the original occupancy pattern, reversing our original conclusion from occupancy modeling that this occupancy pattern was isolation driven and suggesting that it would be detrimental to increase connectivity without improving local habitat quality. These results illustrate that inferences from snapshot occupancy should be treated with caution and subjected to testing through experimental reintroductions in selected model systems.     

Uncertainty propagation in vegetation distribution models based on ensemble classifiers

Ensemble learning techniques are increasingly applied for species and vegetation distribution modelling, often resulting in more accurate predictions. At the same time, uncertainty assessment of distribution models is gaining attention. In this study, Random Forests, an ensemble learning technique, is selected for vegetation distribution modelling based on environmental variables. The impact of two important sources of uncertainty, that is the uncertainty on spatial interpolation of environmental variables and the uncertainty on species clustering into vegetation types, is quantified based on sequential Gaussian simulation and pseudo-randomization tests, respectively. An empirical assessment of the uncertainty propagation to the distribution modelling results indicated a gradual decrease in performance with increasing input uncertainty. The test set error ranged from 30.83% to 52.63% and from 30.83% to 83.62%, when the uncertainty ranges on spatial interpolation and on vegetation clustering, respectively, were fully covered. Shannon’s entropy, which is proposed as a measure for uncertainty of ensemble predictions, revealed a similar increasing trend in prediction uncertainty. The implications of these results in an empirical distribution modelling framework are further discussed with respect to monitoring setup, spatial interpolation and species clustering.     

The Potential for Species Conservation in Tropical Secondary Forests

Abstract: In the wake of widespread loss of old‐growth forests throughout the tropics, secondary forests will likely play a growing role in the conservation of forest biodiversity. We considered a complex hierarchy of factors that interact in space and time to determine the conservation potential of tropical secondary forests. Beyond the characteristics of local forest patches, spatial and temporal landscape dynamics influence the establishment, species composition, and persistence of secondary forests. Prospects for conservation of old‐growth species in secondary forests are maximized in regions where the ratio of secondary to old‐growth forest area is relatively low, older secondary forests have persisted, anthropogenic disturbance after abandonment is relatively low, seed‐dispersing fauna are present, and old‐growth forests are close to abandoned sites. The conservation value of a secondary forest is expected to increase over time, as species arriving from remaining old‐growth forest patches accumulate. Many studies are poorly replicated, which limits robust assessments of the number and abundance of old‐growth species present in secondary forests. Older secondary forests are not often studied and few long‐term studies are conducted in secondary forests. Available data indicate that both old‐growth and second‐growth forests are important to the persistence of forest species in tropical, human‐modified landscapes.     

Comparison of macroinvertebrate community structure in urban (Shenzhen City) streams with typical habitat characteristics北大核心CSCD

2020年12月在深圳市城市区域典型生境特征溪流——城市山区源头溪流金龟河、国家地质公园保护区入海溪流杨梅坑河与黑臭水体治理后溪流石溪河,开展底栖动物多样性与生境质量状况取样,通过多元统计分析探明各溪流底栖动物群落结构差异及其主要环境影响因子.结果表明:(1)金龟河底质异质性(SI)最高;杨梅坑河水质最好且流态异质性(Fr)最优,石溪河水质最差且底质异质性(Fr)最低.(2)共采集鉴定大型底栖动物118个分类单元,隶属于3门6纲14目87科.水生昆虫均占绝对优势,其中金龟河67属(81.7%),杨梅坑河62属(95.4%),石溪河12属(52.2%).金龟河中底栖动物Shannon-Wiener多样性指数、改进的Shannon-Wiener多样性指数、Pielou均匀度均高于杨梅坑河与石溪河.(3)金龟河的主要功能摄食类群是滤食者(45.5%),杨梅坑河(38.3%)与石溪河(58.7%)的主要功能摄食类群均为收集者.(4)冗余分析(RDA)结果显示,氨氮、海拔、湿宽、水温、溶氧、底质异质性(SI)、电导率和流态异质性(Fr)为影响深圳市溪流的大型底栖动物群落结构的主要环境因子.研究表明:(1)深圳市的山区溪流可作为深圳市生物多样性保护的重点区域.(2)在城市溪流生态系统中,水环境化学因子并非为主要影响因子,生境多样性发挥了重要作用.(图6表3参43)     

On the sudden disappearance of Egeria densa from a Ramsar wetland site of Southern Chile: A climatic event trigger model

Contemporary shallow lakes theory proposes that these ecosystems may experience abrupt regime shifts due to small changes in controlling variables or triggers. So far, these triggers have been related mostly to nutrients as the immediate driver. During May 2004 the río Cruces wetland, a Ramsar site located in Southern Chile, underwent a major regime shift, from a clear water state, vastly dominated by the invasive macrophyte Egeria densa, to a turbid water state. In this article we show, through the analysis of long-term meteorological data that late fall 2004 was anomalous due to the presence of a high-pressure cell that persisted most of the month of May over Southern Chile. This climatic event caused an almost complete absence of precipitations and lower temperatures during this period, including several freezing nights. Eco-physiological experiments showed that 6 h exposure to desiccation kill the macrophyte. We developed a simple-biology dynamic model, under Stella Research 9.1, to show that the climatic anomaly of May 2004, plus the increased sedimentation of the wetland's floodplains, and the associated response of E. densa, explains its sudden disappearance from río Cruces wetland.     

TURBIDITY SUSPENI)ED SEDIMENT,AND WATER CLARITY: A REVIEW1

ABSTRACT: Suspended sediment causes a range of environmental damage, including benthic smothering, irritation of fish gills, and transport of sorbed contaminants. Much of the impact, while sediment remains suspended, is related to its light attenuation, which reduces visual range in water and light availability for photosynthesis. Thus measurement of the optical attributes of suspended matter in many instances is more relevant than measurement of its mass concentration. Nephelometric turbidity, an index of light scattering by suspended particles, has been widely used as a simple, cheap, instrumental surrogate for suspended sediment, that also relates more directly than mass concentration to optical effects of suspended matter. However, turbidity is only a relative measure of scattering (versus arbitrary standards) that has no intrinsic environmental relevance until calibrated to a ‘proper’ scientific quantity. Visual clarity (measured as Secchi or black disc visibility) is a preferred optical quantity with immediate environmental relevance to aesthetics, contact recreation, and fish habitat. Contrary to common perception, visual clarity measurement is not particularly subjective and is more precise than turbidity measurement. Black disc visibility is inter‐convertible with beam attenuation, a fundamental optical quantity that can be monitored continuously by beam transmissometry. Visual clarity or beam attenuation should supplant nephelometric turbidity in many water quality applications, including environmental standards.     

Reestablishing Naturally Functioning Dunes on Developed Coasts

Common beach management practices reduce the ecological values of coastal dunes. Mechanical beach cleaning eliminates incipient dunes, habitat for nesting birds, seed sources for pioneer dune colonizers and food for fauna, and artificially small, stabilized foredunes reduce the variability in microenvironments necessary for biodiversity. Recent initiatives for reducing coastal hazards, protecting nesting birds, and encouraging nature-based tourism provide incentive for the development of a restoration program for beaches and dunes that is compatible with human use. Suggested changes in management practice include restricting or rerouting pedestrian traffic, altering beach-cleaning procedures, using symbolic fences to allow for aeolian transport while preventing trampling of dunes, and eliminating or severely restricting exotic species. Landforms will be more natural in function and appearance but will be more dynamic, smaller and in a different position from those in natural areas. Research needs are specified for ecological, geomorphological, and attitudinal studies to support and inform restoration planning.     

Comparison of Function of Created Wetlands of Two Age Classes in Central Pennsylvania

Hydrogeomorphic (HGM) functional assessment models were used to assess whether function in created wetlands of two ages (1 year old and >12 years old) was equivalent to that of natural (reference) mainstem floodplain wetlands. Reference wetlands scored higher than both created age classes for providing energy dissipation and short-term surface water storage. Reference wetlands scored higher in maintaining native plant community and structure than 1-year-old sites, and 12-year-old wetlands scored higher than reference sites for providing vertebrate habitat structure. Analysis of individual model variables showed that reference wetlands had greater vegetative biomass and higher soil organic matter content than both created wetland age classes. Created wetlands were farther from natural wetlands and had smaller mean forest patch sizes within a 1-km-radius circle around the site than did the reference sites, indicating less hydrologic connectivity. Created wetlands also had less microtopographic variation than reference wetlands. The 1-year-old created sites were placed in landscape settings with greater land use diversity and road density than reference sites. The 12-year-old sites had a higher gradient and a higher percentage of their surrounding area in urban land use. These results show that the created wetlands were significantly structurally different (if not functionally so) from reference wetlands even after 12 years. The most profound differences were in hydrology and the characteristics of the surrounding landscape. More attention needs to be focused on placing created wetlands in appropriate settings to encourage proper hydrodynamics, eliminate habitat fragmentation, and minimize the effects of stressors to the site.     

The role of remote sensing in hydrological modelling of the Okavango Delta, Botswana

A coupled surface water-groundwater model of the Okavango Delta has been built based on the United States Geological Survey software MODFLOW 2000 including the SFR2 package for stream-flow routing. It will provide a new tool for evaluating water management and climate change scenarios. The delta's size and limited accessibility make direct, on the ground data acquisition difficult. Remote sensing methods are the most promising source of acquiring spatially distributed data for both model input parameters and calibration. Topography, aquifer thickness, channel positions, evapotranspiration and precipitation data are all based on remote sensing. Simulated flooding patterns are compared to patterns derived from visible to thermal NOAA-AVHRR data and microwave radar ENVISAT-ASAR data.