松毛虫遗传多样性研究中AFLP反应体系的建立

以油松毛虫为材料,对T4 DNA连接酶不同用量、预扩增中的Mg~(2+)浓度、dNTP浓度、引物浓度以及选择性扩增巾的预扩增产物稀释倍数、Mg2~(2+) 浓度、dNTP浓度、引物浓度和Taq酶浓度进行了比较分析.最终建立了适合松毛虫的AFLP反应体系.用优化的AFLP反应体系,以油松毛虫、赤松毛虫和马尾松毛虫为材料筛选引物,从81对引物组合中筛选出10对多态性高的引物组合.图9参17     

Rarefaction and nonrandom spatial dispersion patterns

Rarefaction estimates how many species are expected in a random sample of individuals from a larger collection and allows meaningful comparisons among collections of different sizes. It assumes random spatial dispersion. However, two common dispersion patterns, within-species clumping and segregation among species, can cause rarefaction to overestimate the species richness of a smaller continuous area. We use field studies and computer simulations to determine (1) how robust rarefaction is to nonrandom spatial dispersion and (2) whether simple measures of spatial autocorrelation can predict the bias in rarefaction estimates. Rarefaction does not estimate species richness accurately for many communities, especially at small sample sizes. Measures of spatial autocorrelation of the more abundant species do not reliably predict amount of bias. Survey sites should be standardized to equal-sized areas before sampling. When sites are of equal area but differ in number of individuals sampled, rarefaction can standardize collections. When communities are sampled from different-sized areas, the mean and confidence intervals of species accumulation curves allow more meaningful comparisons among sites. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.

不同C/N值下亚硝酸盐氧化菌和异养菌混合体系的微生物多样性

采用PCR-RFLP技术研究了不同C/N比下亚硝酸盐氧化菌及异养菌混合体系的微牛物多样性,并探讨了微生物菌群结构与其功能(硝化件能)的关系.C/N=0时,混合体系主要由自养菌和寡营养菌(85.1%)组成,包括亚硝酸盐氧化菌(NOB)、拟杆菌门、α-变形菌纲、浮霉菌门和绿色非硫细菌中的一些菌株.C/N=0.44时,混合体系中的自养菌减少,异养菌(主要是γ-变形菌纲的成员)大量出现.C/N=8.82时,γ-变形菌纲的菌株尤其是反硝化菌Pseudomonas sp.占主导(93.8%),与此同时,随着C/N升高,该混合体系的硝化性能也由专一的亚硝酸盐氧化过程转变为同时硝化反硝化过程.微生物菌群结构的转变较好地解释了其硝化性能的改变.本研究揭示了微生物菌群结构与其功能的内在联系,同时表明PCR-RFLP技术与化学分析相结合是研究微生物菌群结构与功能的有力工具.图3表2参13     

Spatial and seasonal variations in bacterial communities of the Yellow Sea by T-RFLP analysis

Four typical coastal sites (rocky shore, sandy shore, mud flat shore, and artificial harbor) at the Yellow Sea were chosen to investigate the spatial and seasonal variations in bacterial communities. This was accomplished by using terminal restriction fragment length polymorphism (T-RFLP) analysis of PCR amplified 16S rDNA fragments. Two kinds of tetrameric restriction enzymes, HhaI and MspI, were used in the experiment to depict the bacterial community diversity in different marine environments. It was found that the community compositions digested by the two enzymes separately were different. However, the results of bacterial community diversity derived from them were similar. The MDA analysis results of T-RFLP profiles coming from HhaI and MspI both exhibited a significant seasonal community shift for bacteria and a relatively low spatial variation among the four locations. With HhaI as the sample, the pair wise T-tests also revealed that variations were minor between each pair of marine environments, with R ranging from 0.198 to 0.349. However, the bacterial community structure in the mud flat site depicted a larger difference than each of the other three sites (R ranging from 0.282 to 0.349).     

热排放对湘江大型底栖无脊椎动物的影响

湘潭电厂温排水对湘江湘潭电厂江段大型底栖无脊椎动物 (以下简称底栖动物 )种类组成和数量变化的影响表明 ,在强增温区底栖动物不能生存 ;自然水温在 2 6℃以下的季节里 ,中、低增温区底栖动物种类和数量比自然水体要丰富 ,多样性指数值相应增高 ;突然停止温排 ,增温区内喜温动物有可能受冷冲击而死亡。     

复垦红壤中牧草根际微生物群落功能多样性

通过盆栽试验研究了浙江省诸暨铜矿区复垦红壤牧草根际微生物生物量及群落功能多样性的变化.结果表明,种植不同牧草使矿区土壤根际微生物生物量碳发生了显著的变化,其影响大小因矿区土壤污染程度而异.无污染和轻度污染土壤根际微生物生物量碳变化表现为黑麦草+三叶草>三叶草>黑麦草>未种植土壤,处理间差异均达显著水平(P<0.05),重度污染环境下各处理间差异不明显.Biolog数据分析显示,种植不同牧草的矿区土壤根际微生物群落结构和功能多样性也发生了相应改变,根际土壤微生物群落代谢剖面(AWCD)均显著高于未种植牧草土壤,处理间差异达极显著水平(P<0.001).典型变量分析揭示了不同牧草根际微生物群落利用碳源种类和数量存在明显差异.     

Interspecific Patterns of Genetic Diversity in Birds: Correlations with Extinction Risk

Abstract:  Birds are frequently used as indicators of ecosystem health and are the most comprehensively studied class in the animal kingdom. Nevertheless, a comprehensive, interspecific assessment of the correlates of avian genetic diversity is lacking, even though indices of genetic diversity are of considerable interest in the conservation of threatened species. We used published data on variation at microsatellite loci from 194 bird species to examine correlates of diversity, particularly with respect to conservation status and population size. We found a significant decline in mean heterozygosity with increasing extinction risk, and showed, by excluding species whose heterozygosity values were calculated with heterospecific primers, that this relationship was not dependent on ascertainment bias. Results of subsequent regression analyses suggested that smaller population sizes of threatened species were largely responsible for this relationship. Thus, bird species at risk of extinction are relatively depauperate in terms of neutral genetic diversity, which is expected to make population recovery more difficult if it reflects adaptive genetic variation. Conservation policy will need to minimize further loss of diversity if the chances of saving threatened species are to be maximized.     

威海市区黑松林群落的物种多样性特征

用3个丰富度指数、2个多样性指数和3个均匀度指数对威海市区11个黑松林群落多样性进行研究,并用相关分析研究了这些指数间的关系,结果表明:(1)黑松混交林群落的丰富度和多样性均高于黑松纯林群落,但均匀度却无此规律;(2)生境最优的黑松+刺槐+麻栎林(位于仙姑顶的样地11)在11个样地中的物种多样性表现最好,丰富度、多样性和均匀度都最大.而生境最差的位于火炬大厦的黑松纯林(样地2)群落的丰富度和多样性指数都最小;(3)除样地2外,其余样地群落的草本层丰富度和多样性都最大,灌木层次之,乔木层最小,均匀度无此规律;(4)3个丰富度指数之间、2个多样性指数之间以及两个Pielou均匀度指数之间存在极显著的相关性,但Alatalo均匀度指数和其它7个指数之间相关性都不显著,同时对8个物种多样性指数进行比较后发现丰富度指数中Patrick指数(S)最优,而多样性指数中Shannon-Wiener(H)最优,均匀度指数中以H为基础计算出的Pielou(JH)指数最优.     

两种苯甲酸处理系统细菌群落结构的ARDRA分析

利用ARDRA(扩增rDNA限制性分析)的方法对两种驯化条件产生的苯甲酸活性污泥中细菌的群落结构进行了分析。提取污泥样品总DNA以后,利用细菌16SrDNA通用引物进行PCR扩增。结果显示:两种活性污泥分别有20.4%和24.3%的酶切类型是自身特有的,可见在微生物群落结构上差别显著。并且利用这种方法分别检测到了103和107种的微生物类型,而利用传统的纯培养手段则只分别分离到了7种和8种微生物,分别只占ARDRA方法的6.8%和7.5%,充分显示了分子生物学的方法在进行微生物群落结构研究方面所具有的优越性。     

大肠杆菌总DNA快速提取方法的比较研究

从动物粪便中分离大肠埃希氏杆菌（Escherichia coli）,利用五种不同方法提取大肠埃希氏杆菌的基因组DNA .通过定性、定量分析加以比较 ,确定一套经济、有效的适用于提取大肠埃希氏杆菌基因组DNA的方法--液氮法.以该方法提取的DNA为模板,通过扩增核糖体基因区间序列（16s-23s基因间隔区）可以应用于海水中粪便污染源示踪研究.