Assessing biological variation from the perspective of diversity

Particularly in ecological and evolutionary genetics, methods of discerning complex traits are improving at a considerable rate. As a consequence, the resolution of intrinsically qualitative traits such as species affiliation or genetic type is increasing to degrees that blur their distinction from continuously varying characteristics. The common notion of diversity, however, relies on distinct features such as the states of qualitative traits, and it aims to assess variation as a counting of these features or types. This situation brings up the question of whether and how the diversity perspective of variation can be broadened to cover higher levels of complexity without sacrificing its concept. The present paper suggests two approaches that refer to established criteria for measures of diversity and that complement each other. The partitions approach treats complexity through general measures of difference between trait states, and the relations approach rests on general binary relations that capture structural aspects of diversity. Both approaches are shown to consistently imply effective numbers of types even in cases where distinct types are not explicitly specified. Practically all of the common methods of measuring diversity can be classified into either of the two approaches, and new opportunities for analyses of the diversity of complex traits are provided. The latter analyses include those of diversity in subdivided collections. Other perspectives of variation (such as dispersion, variances, etc.) are discussed and analyzed for their distinction from the diversity perspective. In many cases, the distinction can be made apparent with the help of diversity portraits.     

Multispecies genetic objectives in spatial conservation planning

Growing threats to biodiversity and global alteration of habitats and species distributions make it increasingly necessary to consider evolutionary patterns in conservation decision making. Yet, there is no clear‐cut guidance on how genetic features can be incorporated into conservation‐planning processes, despite multiple molecular markers and several genetic metrics for each marker type to choose from. Genetic patterns differ between species, but the potential tradeoffs among genetic objectives for multiple species in conservation planning are currently understudied. We compared spatial conservation prioritizations derived from 2 metrics of genetic diversity (nucleotide and haplotype diversity) and 2 metrics of genetic isolation (private haplotypes and local genetic differentiation) in mitochondrial DNA of 5 marine species. We compared outcomes of conservation plans based only on habitat representation with plans based on genetic data and habitat representation. Fewer priority areas were selected for conservation plans based solely on habitat representation than on plans that included habitat and genetic data. All 4 genetic metrics selected approximately similar conservation‐priority areas, which is likely a result of prioritizing genetic patterns across a genetically diverse array of species. Largely, our results suggest that multispecies genetic conservation objectives are vital to creating protected‐area networks that appropriately preserve community‐level evolutionary patterns.     

Mitigating the impact of oil‐palm monoculture on freshwater fishes in Southeast Asia

Anthropogenic land‐cover change is driving biodiversity loss worldwide. At the epicenter of this crisis lies Southeast Asia, where biodiversity‐rich forests are being converted to oil‐palm monocultures. As demand for palm oil increases, there is an urgent need to find strategies that maintain biodiversity in plantations. Previous studies found that retaining forest patches within plantations benefited some terrestrial taxa but not others. However, no study has focused on aquatic taxa such as fishes, despite their importance to human well‐being. We assessed the efficacy of forested riparian reserves in conserving freshwater fish biodiversity in oil‐palm monoculture by sampling stream fish communities in an oil‐palm plantation in Central Kalimantan, Indonesia. Forested riparian reserves maintained preconversion local fish species richness and functional diversity. In contrast, local and total species richness, biomass, and functional diversity declined markedly in streams without riparian reserves. Mechanistically, riparian reserves appeared to increase local species richness by increasing leaf litter cover and maintaining coarse substrate. The loss of fishes specializing in leaf litter and coarse substrate decreased functional diversity and altered community composition in oil‐palm plantation streams that lacked riparian reserves. Thus, a land‐sharing strategy that incorporates the retention of forested riparian reserves may maintain the ecological integrity of fish communities in oil‐palm plantations. We urge policy makers and growers to make retention of riparian reserves in oil‐palm plantations standard practice, and we encourage palm‐oil purchasers to source only palm oil from plantations that employ this practice.     

Incorporating geodiversity into conservation decisions

In a rapidly changing climate, conservation practitioners could better use geodiversity in a broad range of conservation decisions. We explored selected avenues through which this integration might improve decision making and organized them within the adaptive management cycle of assessment, planning, implementation, and monitoring. Geodiversity is seldom referenced in predominant environmental law and policy. With most natural resource agencies mandated to conserve certain categories of species, agency personnel are challenged to find ways to practically implement new directives aimed at coping with climate change while retaining their species‐centered mandate. Ecoregions and ecological classifications provide clear mechanisms to consider geodiversity in plans or decisions, the inclusion of which will help foster the resilience of conservation to climate change. Methods for biodiversity assessment, such as gap analysis, climate change vulnerability analysis, and ecological process modeling, can readily accommodate inclusion of a geophysical component. We adapted others’ approaches for characterizing landscapes along a continuum of climate change vulnerability for the biota they support from resistant, to resilient, to susceptible, and to sensitive and then summarized options for integrating geodiversity into planning in each landscape type. In landscapes that are relatively resistant to climate change, options exist to fully represent geodiversity while ensuring that dynamic ecological processes can change over time. In more susceptible landscapes, strategies aiming to maintain or restore ecosystem resilience and connectivity are paramount. Implementing actions on the ground requires understanding of geophysical constraints on species and an increasingly nimble approach to establishing management and restoration goals. Because decisions that are implemented today will be revisited and amended into the future, increasingly sophisticated forms of monitoring and adaptation will be required to ensure that conservation efforts fully consider the value of geodiversity for supporting biodiversity in the face of a changing climate.     

活性污泥系统聚糖菌的富集与菌群多样性分析

在实验室规模续批式反应器(SBR)内,采用人工配水作为系统进水,以乙酸钠为唯一碳源,限制进水磷浓度,调整适宜的运行方式对活性污泥进行驯化,培养富集聚糖菌。90 d的培养过程中,系统的进水COD浓度始终维持在260mg/L左右,进水PO3-4-P浓度从20 mg/L逐渐降至2 mg/L,系统除磷能力逐渐丧失。系统内活性污泥的TP/TSS从40.5%降至10.4%,污泥中的糖原/TSS从14.5%增至38.2%,同时COD去除率能保持在90%以上,说明系统中成功富集聚糖菌。采用454高通量测序法分析该系统的活性污泥菌群结构,发现α-proteobacteria,β-proteobacteria,γ-proteobacteria 3类细菌占微生物总量的比例达83.78%。在属的等级上,Tepidicella占活性污泥菌群的比例最高,为20.60%。     

Language‐based diversity and faultlines in organizations

Language‐based diversity is a relatively understudied area within diversity research. Drawing upon the social identity‐based fault lines literature, the present paper describes the effects of language‐based diversity within organizations operating in India. Interview‐based findings indicate that organizationally mandated languages are occasionally disregarded by employees in both national and multinational organizations. Respondents noted how even benign and momentary language switching can lead to the formation of language‐based groups and cause negative consequences such as feelings of being devalued. Respondents also noted strategies that let them attenuate negative effects of multilingualism while simultaneously leveraging its benefits. Overall, the present study indicates that momentary exclusion based on incomprehensible language, when experienced on a daily basis, may have a far‐reaching influence on individual and team functioning. Findings thus point to language use as a trigger that can activate social identity‐based fault lines. Copyright © 2014 John Wiley & Sons, Ltd.     

Modelling phytoclimatic versatility as a large scale indicator of adaptive capacity to climate change in forest ecosystems

CLIMPAIR is a new phytoclimatic model, correlative and niche-based, which simultaneously assesses non-linear, non-statistical and dual measurements of proximity/potentiality of a site with respect to a number of climatic ranges of species, defined by convex hulls, within a suitability space. This set of phytoclimatic distances makes it possible to evaluate the degree to which each species is suitable for that site. Considering not only the number of species compatible (expected species richness), but also all those compatible covers presenting a high level of suitability evenness and finally applying an indicator derived from Shannon's classic entropy index to the set of standardized phytoclimatic coordinates in the suitability hyperspace, we can evaluate the phytoclimatic entropy which may be considered as a means of estimating the phytoclimatic versatility of the site. A site with high phytoclimatic entropy would promise versatile future behaviour, characterized by a wide range of possibilities of adaptation to climate change, and hence versatility can be used as an index of resilience and ability of a forest ecosystem to adapt to climate change. The model has been applied to peninsular Spain for 18 forest tree species and 12 climatic variables between the current mean climate (period 1951-1999) and a future climatic scenario (period 2040-2069). The results generally point to a significant decrease in the versatility of forest tree formations in the area studied, which is not homogeneous owing to a dual altitudinal/latitudinal decoupling. The decrease in versatility is greater in Mediterranean biogeographical areas than in Euro-Siberian ones, where in some cases it actually increases. In altitudinal terms, areas at elevations of less than 1500 m tend to become less versatile than areas situated at higher elevations, where versatility increases partly as a result of enrichment of alpine conifer forests with broadleaf species.     

Comparing Spatially Explicit Ecological and Social Values for Natural Areas to Identify Effective Conservation Strategies

Abstract: Consideration of the social values people assign to relatively undisturbed native ecosystems is critical for the success of science‐based conservation plans. We used an interview process to identify and map social values assigned to 31 ecosystem services provided by natural areas in an agricultural landscape in southern Australia. We then modeled the spatial distribution of 12 components of ecological value commonly used in setting spatial conservation priorities. We used the analytical hierarchy process to weight these components and used multiattribute utility theory to combine them into a single spatial layer of ecological value. Social values assigned to natural areas were negatively correlated with ecological values overall, but were positively correlated with some components of ecological value. In terms of the spatial distribution of values, people valued protected areas, whereas those natural areas underrepresented in the reserve system were of higher ecological value. The habitats of threatened animal species were assigned both high ecological value and high social value. Only small areas were assigned both high ecological value and high social value in the study area, whereas large areas of high ecological value were of low social value, and vice versa. We used the assigned ecological and social values to identify different conservation strategies (e.g., information sharing, community engagement, incentive payments) that may be effective for specific areas. We suggest that consideration of both ecological and social values in selection of conservation strategies can enhance the success of science‐based conservation planning.     

紫茎泽兰和飞机草在广西的入侵生境植物多样性分析

对紫茎泽兰（Eupatorium adenophorum）和飞机草（Eupatorium odoratum）在广西入侵生境的植物多样性进行了研究。结果表明：在紫茎泽兰、飞机草发生危害的生境,Simpson指数、Shannon-Wiener指数、Pielou均匀度指数均比没有紫茎泽兰、飞机草危害的生境低。在紫茎泽兰样方中,有紫茎泽兰入侵的生境其上述各指数分别比没有紫茎泽兰入侵的低43.65%、55.13%、55.68%。而在飞机草样方中,有飞机草入侵的生境其上述各指数分别比没有飞机草入侵的低33.55%、37.78%、17.98%。说明紫茎泽兰和飞机草对入侵生境的植物多样性影响较大。     

塔里木河中游水盐梯度下的物种多样性研究

根据塔里木河中游5个断面30眼地下水监测井和30个植物样地2006—2008年调查监测的数据,分析了输水堤防修建后地下水埋深、地下水质以及物种多样性的变化及其相互关系。结果表明:地下水埋深的空间变化表现为沿河道方向先增加后减小的趋势,在时间上则表现为,从2006年到2008年埋深呈逐渐增加的特点;地下水化学类型的变化,在空间上表现出沿着河道方向有由Cl-—SO42-—Na+—Mg2+向Cl-—Na+类型转变的趋势,在时间上,地下水矿化度逐渐增加。物种多样性总体上呈现增加变化,地下水位和水质对塔里木河中游物种多样性变化有着密切的关系,地下水埋深2.8~3.7 m,矿化度1.8~2.4 g·L-1水平下的多样性较高,随着地下水埋深的增大和矿化度的升高,物种多样性水平降低。