Genetic Bottlenecks Driven by Population Disconnection

Abstract: Connectivity among populations plays a crucial role in maintaining genetic variation at a local scale, especially in small populations affected strongly by genetic drift. The negative consequences of population disconnection on allelic richness and gene diversity (heterozygosity) are well recognized and empirically established. It is not well recognized, however, that a sudden drop in local effective population size induced by such disconnection produces a temporary disequilibrium in allelic frequency distributions that is akin to the genetic signature of a demographic bottleneck. To document this effect, we used individual‐based simulations and empirical data on allelic richness and gene diversity in six pairs of isolated versus well‐connected (core) populations of European tree frogs. In our simulations, population disconnection depressed allelic richness more than heterozygosity and thus resulted in a temporary excess in gene diversity relative to mutation drift equilibrium (i.e., signature of a genetic bottleneck). We observed a similar excess in gene diversity in isolated populations of tree frogs. Our results show that population disconnection can create a genetic bottleneck in the absence of demographic collapse.     

恩诺沙星对土壤微生物群落代谢功能多样性的影响（Effects of Enrofloxacin on the Functional Diversity of Soil Microbial Communities）

为了评价恩诺沙星(Enrofloxacin)对土壤微生物群落的影响,借助BIOLOG检测法比较了不同浓度恩诺沙星影响下的土壤微生物的群落特征.结果表明,加药组土壤微生物的丰富度指数和多样性指数显著低于空白对照组,且药物浓度越高丰富度和多样性越小.用药后第3d、14d,恩诺沙星含量0.1～100μg·g-1使土壤微生物群落代谢功能多样性显著降低(p<0.05);第35d,恩诺沙星含量10～100μg·g-1使土壤微生物群落代谢功能多样性显著降低,随着药物作用的时间延长,药物含量0.01～1μg·g-1组土壤微生物群落代谢功能多样性与空白对照组之间的差异变小.     

基于PCR-DGGE的重金属污染土壤微生物种群指纹分析

采用变性梯度凝胶电泳（DGGE）分析方法,研究沈阳市细河沿岸重金属污染土壤中微生物结构多样性、种群丰富度及种群结构的动态变化规律。结果表明：直接从土壤中抽提总DNA,对16SrRNAV3可变区序列进行扩增,DGGE指纹图谱分析,微生物种群结构和变化规律明显,同时也表现为重金属污染程度越重,多样性指数越低;其中细河底泥重金属含量严重超标,多样性指数最低。经方差分析,重金属污染情况与Shannon-wiener多样性指数呈负相关,其中重金属污染对微生物的均匀度指数影响最显著,并且锌污染对其影响最大为-0.985。表明PCR-DGGE技术可以用于污染环境下微生物多样性研究,也为污染环境下土壤微生物多样性研究提供了新的实验方法与依据。     

武汉市城市绿化树种结构与分布特征分析

针对武汉市城市森林的抽样调查分析表明,城市树木树种构成集聚性明显而多样性相对较差、长势一般;城市扰动因素明显影响了树木的自然生长过程。在所调查的93种植物中,其总体多样性指数为0.727 8;行道绿地为0.187;公园绿地为4.296。结果表明武汉市城市森林的基本格局、树种结构,以及树种分布上均有待于改善。     

Biodiversity Differences between Managed and Unmanaged Forests: Meta-Analysis of Species Richness in Europe

Abstract: Past and present pressures on forest resources have led to a drastic decrease in the surface area of unmanaged forests in Europe. Changes in forest structure, composition, and dynamics inevitably lead to changes in the biodiversity of forest‐dwelling species. The possible biodiversity gains and losses due to forest management (i.e., anthropogenic pressures related to direct forest resource use), however, have never been assessed at a pan‐European scale. We used meta‐analysis to review 49 published papers containing 120 individual comparisons of species richness between unmanaged and managed forests throughout Europe. We explored the response of different taxonomic groups and the variability of their response with respect to time since abandonment and intensity of forest management. Species richness was slightly higher in unmanaged than in managed forests. Species dependent on forest cover continuity, deadwood, and large trees (bryophytes, lichens, fungi, saproxylic beetles) and carabids were negatively affected by forest management. In contrast, vascular plant species were favored. The response for birds was heterogeneous and probably depended more on factors such as landscape patterns. The global difference in species richness between unmanaged and managed forests increased with time since abandonment and indicated a gradual recovery of biodiversity. Clearcut forests in which the composition of tree species changed had the strongest effect on species richness, but the effects of different types of management on taxa could not be assessed in a robust way because of low numbers of replications in the management‐intensity classes. Our results show that some taxa are more affected by forestry than others, but there is a need for research into poorly studied species groups in Europe and in particular locations. Our meta‐analysis supports the need for a coordinated European research network to study and monitor the biodiversity of different taxa in managed and unmanaged forests.     

不同品种水稻对Cu积累分配的差异

以21个水稻品种（包括常规稻、二系杂交稻、三系杂交稻）为材料,通过室内盆栽试验探讨了Cu在不同品种水稻根-茎-叶-籽粒（糙米）中的积累分配的差异。结果表明,供试水稻品种根、茎、叶、籽粒中Cu含量的均值分别是67.35、16.24、8.29、11.62mg·kg-1,多数水稻品种Cu的含量顺序是根茎籽粒（糙米）叶,但也有少部分水稻品种Cu的含量顺序是根籽粒（糙米）茎叶。各器官的Cu含量在不同品种间存在显著差异,其中以根和籽粒Cu含量的差异最大,茎次之,叶最小。常规稻根部Cu含量显著低于杂交稻,而叶中Cu含量显著高于杂交稻,但两者的茎和籽粒中Cu含量没有明显的差异。三系杂交稻根、茎、籽粒Cu含量显著高于二系杂交稻,而叶的Cu含量两者差异不显著。不同遗传背景的水稻各器官对Cu积累也存在不同程度的差异。相关分析结果表明,不同品种水稻相邻器官（根与茎,茎与叶）的Cu含量呈极显著正相关,相间器官（根与叶、籽粒,茎与籽粒）的Cu含量呈显著正相关,地上部各器官Cu的转运系数相互之间呈极显著的正相关。     

平原河网地区滨岸带外来植物入侵现状及影响研究——以上海青浦区为例

河流滨岸带作为一种典型的开放系统,在受到外界干扰的条件下极易被外来植物所入侵并受到严重影响。以上海青浦区为例,通过对河流滨岸带生态系统入侵植物分布及现状调查,以及对两种入侵植物：白花三叶草（Trifolium repens）和加拿大一枝黄花（Solidago canadensis）群落的物种多样性及其土壤特性的实证研究,探讨外来植物入侵对河流滨岸带生态系统造成的影响。结果表明：目前该地区河流滨岸带外来入侵植物共有14科24种,其科、种数分别占到该生态系统所有植物的48．3％与26．1％。入侵植物白花三叶草与加拿大一枝黄花在春、秋两季均显著降低了河流滨岸带植物群落的物种多样性。此外,两种人侵植物也对当地河流滨岸及土壤特性造成了不同程度的影响,其中对土壤含水量、pH值的影响最为显著。该研究填补了平原河网地区河流滨岸带生态系统外来植物入侵研究的空白,有助于今后开展对该生态系统的评价、恢复及管理工作。     

桑园土壤微生物群落功能多样性对PAHs污染的响应

为了探明桑园土壤微生物群落功能多样性与多环芳烃(PAHs)污染的关系,采用Biolog检测法研究某路域桑园土壤微生物功能多样性对PAHs污染的响应。结果表明,不同区域PAHs污染程度由大到小依次为区域2(位于区域1和3之间)、3(离公路最远)和1(离公路最近);Biolog分析发现不同区域土壤微生物对碳源利用的平均颜色变化率(AWCD)由大到小依次为区域2、3和1;区域2的Shannon指数和Gini指数均显著高于区域1和3,而区域1的Shannon均匀度显著低于区域2和3,区域2土壤微生物活性最强且群落结构最丰富,其后依次为区域3和1。主成分分析结果显示,3个区域微生物群落的生理功能差异明显,主要表现在对糖类和氨基酸类物质的代谢上。冗余分析表明,区域2土壤微生物与PAHs含量关系最密切,说明较高的PAHs含量更能激发桑园土壤微生物的生理活性,微生物群落代谢功能因PAHs污染而有所提高。     

番茄ARF4基因果实特异RNAi载体的构建及遗传转化

构建ARF4基因果实特异表达的RNA干涉载体,对转基因番茄果实进行初步分析,可为采用基因工程方法改良番茄果实品质做出新尝试.利用RT-PCR技术从番茄果实cDNA中扩增SlARF4基因全长,将番茄ARF4基因正反向重复序列片段导入到植物表达载体pBI121上,启动子是番茄果实特异表达的TFM7.将构建的ARF4基因果实特异RNA干涉载体pBI121-TFM7-A4Ri通过根癌农杆菌介导转入到野生型番茄中,进而对转化获得的植株进行了阳性鉴定.分别以转基因番茄和野生型番茄为材料,分析ARF4在果实中的表达水平,测定绿熟期果实叶绿素含量、果实的单果重量和果皮厚度.酶切证实pBI121-TFM7-A4Ri果实特异表达载体构建成功,而且,PCR检测也得到阳性转基因株.半定量RT-PCR分析显示,转基因番茄果实中ARF4的表达量明显低于野生型果实.转基因番茄果实的叶绿素含量、单果重量和果皮厚度都比野生型有提高.因此,ARF4果实特异表达的RNAi方法能够改良番茄果实品质.     

腾冲热海高温酸性热泉类病毒颗粒的多样性

为了解云南腾冲热海高温酸性热泉中类病毒颗粒的多样性及特征,采用电子显微镜、双层平板及DNA限制性酶切分析等方法,从腾冲热海61~94℃酸性热泉富集液中分离纯化病毒颗粒,对病毒形态特征进行分析比较.结果显示:腾冲热海不同酸性热泉样品富集培养物中病毒DNA的限制性酶切图谱差异明显;病毒液中共观察到4种不同类型的病毒状颗粒,依据其形态特征,大致可以分为头尾型病毒、丝状病毒、球状病毒、纺锤型病毒;这些病毒形态与分离自美国、日本、冰岛等地的高温酸性热泉病毒形态基本相似,多数类似于硫化叶菌已发现的病毒,可见腾冲热海高温酸性热泉中类病毒颗粒具有一定的多样性.同时分离获得一株硫化叶菌病毒,呈纺锤形,一端有尾,纺锤形头部的大小为220 nm×80 nm,尾部的长度变化很大,从20~100 nm不等,平均长度为50 nm左右,病毒有囊膜,囊膜的厚度约为10~15 nm,该病毒的形态特征、形成抑菌斑的大小及宿主菌株的特性与分离自腾冲热海的第一株硫化叶菌病毒STSV1差异显著,可能为一株新的硫化叶菌病毒,故命名为STSV2(Sulfolobus tengchongensis spindle-shaped virus 2).