Phylogeography and Limited Genetic Connectivity in the Endangered Boring Giant Clam across the Coral Triangle

Abstract: The Coral Triangle is the global center of marine biodiversity; however, its coral reefs are critically threatened. Because of the bipartite life history of many marine species with sedentary adults and dispersive pelagic larvae, designing effective marine protected areas requires an understanding of patterns of larval dispersal and connectivity among geographically discrete populations. We used mtDNA sequence data to examine patterns of genetic connectivity in the boring giant clam (Tridacna crocea) in an effort to guide conservation efforts within the Coral Triangle. We collected an approximately 485 base pair fragment of mtDNA cytochrome c oxidase 1 (CO1) from 414 individuals at 26 sites across Indonesia. Genetic structure was strong between regions (φ_ST=0.549, p < 0.00001) with 3 strongly supported clades: one restricted to western Sumatra, another distributed across central Indonesia, and a third limited to eastern Indonesia and Papua. Even within the single largest clade, small but significant genetic structure was documented (φ_ST=0.069, p < 0.00001), which indicates limited gene flow within and among phylogeographic regions. Significant patterns of isolation by distance indicated an average dispersal distance of only 25–50 km, which is far below dispersal predictions of 406–708 km derived from estimates of passive dispersal over 10 days via surface currents. The strong regional genetic structure we found indicates potent limits to genetic and demographic connectivity for this species throughout the Coral Triangle and provides a regional context for conservation planning. The recovery of 3 distinct evolutionarily significant units within a well‐studied taxonomic group suggests that biodiversity in this region may be significantly underestimated and that Tridacna taxa may be more endangered than currently recognized.     

Creation and preservation of vegetation patterns by grazing

Structural patterns of tall stands (“tussock”) and short stands (“lawn”) are observed in grazed vegetation throughout the world. Such structural vegetation diversity influences plant and animal diversity. A possible mechanism for the creation and preservation of such patterns is a positive feedback between grazing and plant palatability. Although some theoretical studies have addressed this point in a non-spatial setting, the spatial consequences of this feedback mechanism on the stability and spatial characteristics of vegetation structure patterns have not been studied.We addressed this issue by analyzing a spatially explicit individual-based plant-grazer simulation model, based on published empirical relations and the assumption of optimal foraging.In the model, the selection by the grazer of short stands (that have a higher energy content and are more palatable) is affected by traveling costs and the spatial organization of swards. Nevertheless, the most selected biomass in this type of short stands was the optimal biomass predicted by cropping and digestion constraints. As a result of the optimal foraging strategy, the grazers displayed Lévy-flight traveling behavior during the simulations with characteristic exponent μ ≈ 2.Patterns of short and tall stands created by grazing were preserved for at least a decade. Even in seasonal habitat, the spatial organization of the patterns remained relatively constant, despite fluctuations in the area of short stands. Heterogeneity of initial vegetation increased heterogeneity of the grazing-induced pattern, but did not affect its stability.The area of short stands that was preserved by grazing scaled with the herbivore mass to the power 0.4 and with the carrying capacity of the vegetation to the power −0.75.Patterns of tall and short stands can be created and perpetuated by optimally grazing ruminants, irrespective of possible underlying soil patterns. The simulations generate predictions for the stability and spatial characteristics of such structural vegetation patterns.     

全氟辛烷磺化物(PFOS)诱导斑马鱼胚胎p53基因的点突变

将斑马鱼胚胎于0μg·1-1(空白对照),5μg·l-1,16μg·l-1和50μg·l-1全氟辛烷磺化物(PFOS)溶液中暴露染毒5h,采用变性高效液相色谱方法对PCR扩增的含斑马鱼胚胎p53基因外显子7的173 bp的目标片段进行突变分析.结果显示,16μg·l-1和50μg·l-1两个处理组与对照组相比均有显著性差异,表明PFOS可以诱导斑马鱼胚胎p53基因外显子7的点突变.     

Identification and biological activity of sex pheromone components from females of the plum moth Illiberis rotundata Jordan (Lepidoptera: Zygaenidae: Procridinae)

The plum moth, Illiberis rotundata Jordan (Lepidoptera: Zygaenidae: Procridinae), is a pest of orchards in Japan and China. Few chemical ecological studies have been directed towards the Zygaenidae and particularly the Procridinae. To investigate the sex pheromone of this species, extracts of pheromone glands from adult female I. rotundata were analyzed by coupled gas chromatography-electroantennography (GC-EAG) and coupled gas chromatography-mass spectrometry (GC-MS). Whilst GC-EAG on male moths showed an active peak, identified as 2-butyl (7Z)-dodecenoate, GC-MS also revealed the presence of the homologue 2-butyl (9Z)-tetradecenoate. Electroantennographic investigations, as well as field tests, strongly suggested the natural compounds to have the (R)-configuration at the stereogenic centre. Field results demonstrate 0.2 mg of a 1:1-mixture of (2R)-butyl (7Z)-dodecenoate and (2R)-butyl (9Z)-tetradecenoate to be a powerful lure that may be used in pest control measures against I. rotundata. The chemical structures of the new pheromone components show the same features as those of other zygaenid species: unsaturated fatty acids esterified with a short chain chiral alcohol. This is the first example of a two-component blend constituting the pheromone of a procridinid species.     

Anaerobic transformation of four abundant organochlorine pesticide residues (B8-1413, B9-1679, oxychlordane,p,p‵-DDE) in extracts of Antarctic skua eggs by the isolated bacterium Sulfurospirillum multivorans

Residues of halogenated pollutants bioaccumulated in eggs of the south polar skua (Catharacta maccormicki) from the Antarctic were extracted, purified, and fractionated. The target fraction which contained the bulk of the chloropesticides was concentrated and incubated with cell suspensions of the isolated bacterium Sulfurospirillum multivorans (formerly Dehalospirillum multivorans). S. multivorans was previously identified as a good anoxic transformer of several halogenated compounds. The compounds of technical toxaphene 2-endo,3-exo,5-endo,6-exo,8,8,10,10-octachlorobornane (B8-1413, also known as P-26) and 2-endo,3-exo,5-endo,6-exo,8,8,9,10,10-nonachlorobornane (B9-1679, also known as P-50) as well as 1,1-dichloro-2,2-bis(p-chlorophenyl)ethene (p,p′-DDE) and 1-exo,2-exo,4,5,6,7,8,8-octachloro-2,3-exo-epoxy-3a,4,7,7a-tetrahydro-4,7-methanoindene (oxychlordane) were present at a sufficiently high concentration and hence useful for studying the anaerobic transformation by the bacterium. When treated with S. multivorans, B8-1413 and B9-1679 were almost quantitatively transformed within 1 day. For B9-1679, the major metabolite was found to be 2-endo,3-exo,5-endo,6-exo,8,9,10-heptachlorobornane (B7-1001). Compared to the toxaphenes, transformation of oxychlordane and p,p′-DDE was significantly slower. Even after seven days, about 10% of the initial pool was detected in the extracts. 1-chloro-2,2-bis(p-chlorophenyl)ethene (p,p′-DDMU) was identified as a transformation product of p,p′-DDE. The four compounds in this study comprise some of the most persistent chloropesticide residues found in marine birds. In case there is sufficient transformation before they reach the top predators, the bioaccumulative potential can be significantly reduced.     

Study on polychlorinated dibenzo‐p‐dioxins and dibenzofurans in rivers and estuaries in Osaka Bay in Japan

In order to search the source of polychlorinated dibenzo‐p‐dioxins (PCDDs) and dibenzofurans (PCDFs) in blue mussel in Osaka bay, sediments from Osaka bay and from rivers running near an urban municipal incinerator were analysed for PCDDs, PCDFs and PCBs. The river and estuary sediments were all found to be contaminated with PCDDs at average levels of 9.8 and 12ppb on the dry basis, PCDFs of 7.8 and 5.1 ppb, and PCBs of 1600 and 1300ppb, respectively. The two sediments contained similar profiles of specific isomers and congeners of PCDDs and PCDFs with each other. In addition, there was observed positive close correlations between PCDD and PCDF levels in the two specimens as well as fly ash from urban municipal incinerators. These allow the conclusion that the main source of the two chemicals in Osaka bay is fly ash from waste incineration.     

Metal binding capacity of soft acid,organic‐rich waters

Organic carbon from one stream and two ponds in South Carolina was fractionated into five nominal molecular diameter fractions by ultrafiltration. The concentrations associated with and binding capacity for Ca, Cd, Cu and Pb were determined for each fraction. The distribution of organic carbon among ultrafilter fractions varied from water to water, with the largest percentage occurring in the smaller fractions. Calcium was associated with each of the fractions isolated from each of the three waters, indicating Ca is bound to organics in all fractions, however, more than 99% of the Ca which passed the smallest ultrafilter was removed by cationic exchange resin. Each fraction bound more Ca than Cd, Cu or Pb except in a few cases where Pb binding was greater. All of the organic fractions had their Ca++ binding sites saturated. Calcium was not an effective competitive ion against Cd, Cu or Pb for organic binding sites. The total Cu binding capacity was less than that of Ca or Pb but similar to that of Cd. Naturally occurring organics bound more Pb than Cd or Cu but less than Ca. Saturation of Cu binding sites was less than 20% in most ultrafilter fractions except that with a nominal molecular weight of between 10,000 and 300,000 where the percent of saturation was as much as 60%. Approximately 50% of the Cu was removed onto anionic exchange resin in two waters while more than 90% was removed from water with a high organic content. Percent saturation of Cd and Pb binding sites ranged from 0.091% to 5.4% and 0.059% to 1.5%, respectively. All ions tested effectively competed with Cd, Cu or Pb for some but not all binding sites, indicating that organic binding sites were heterogeneous. A generalized order of metal‐organic stabilities based on competition for binding sites is Al>Cd>Pb>Cu>Ni = Mg=Zn = Mn>Ca. Both Cd+2 and Al+3 effectively out competed Pb++ and Cd and Pb out competed Cu for most organic binding sites.     

Response of Neotropical Bat Assemblages to Human Land Use

Neotropical bats are sensitive to human‐induced habitat changes, and some authors believe bats can be used as bioindicators. In the literature, however, the results are disparate. Some results show bat diversity deceases as disturbance increases, whereas others indicate no effect. Determining the general response patterns of bats when they encounter different degrees of human‐induced disturbance across the Neotropics would help to determine their usefulness as bioindicators. In a series of meta‐analyses, we compared the occurrence frequency of bat species between well‐preserved forests and human‐use areas. We obtained data through an extensive review of published peer‐reviewed articles, theses, and reports. The overall effect size indicated that human‐use areas harbored more bat species than well‐preserved forests. Different response patterns emerged when meta‐analyses were conducted separately by family, feeding habit, vegetation stratum, and conservation status. Our results suggest that bat assemblages display strong responses to forest loss and land‐use change and that the direction and magnitude of these responses depends on the bat group under study and the type of disturbance. Our results are consistent with the idea that bats are useful for assessing the effects of habitat changes in the Neotropics. However, with our meta‐analyses we could not detect fine differences in bat feeding habits, especially within Phyllostomidae, or elucidate the effect of landscape configuration. Respuesta de Ensambles de Murciélagos Neotropicales al Uso de Suelo por Humanos     

Workplace response of companies exposed to the 9/11 World Trade Center attack: a focus‐group study

The terrorist attacks of 11 September 2001 (9/11) left workplaces in pressing need of a mental health response capability. Unaddressed emotional sequelae may be devastating to the productivity and economic stability of a company's workforce. In the second year after the attacks, 85 employees of five highly affected agencies participated in 12 focus groups to discuss workplace mental health issues. Managers felt ill prepared to manage the magnitude and the intensity of employees' emotional responses. Rapid return to work, provision of workplace mental health services, and peer support were viewed as contributory to emotional recovery. Formal mental health services provided were perceived as insufficient. Drawing on their post‐9/11 workplace experience, members of these groups identified practical measures that they found helpful in promoting healing outside of professional mental health services. These measures, consistent with many principles of psychological first aid, may be applied by workplace leaders who are not mental health professionals.     

阿魏酸、对羟基苯甲酸对土壤中氮矿化的影响

实验研究阿魏酸、对羟基苯甲酸对土壤中的氮矿化的影响,分析了麦秸和麦秸在土中腐解时产生的酚酸与土壤中氮矿化作用的相关性．结果表明,２种酸对氮矿化的影响不同．在对羟基苯甲酸存在下微生物对氮的固持作用大于在阿魏酸存在下的固持作用．土样中加入酚酸与加入麦秸相比,麦秸对土壤中氮的矿化的影响更为显著,变化趋势也不同．