北京地区菜田土壤抗生素抗性基因的分布特征

为研究北京地区菜田土壤抗生素抗性基因(antibiotic resistance genes,ARGs)的污染状况和分布特征,采集了11个长期施用粪肥蔬菜基地的温室土壤和大田土壤,进行了抗生素以及ARGs种类和丰度的检测.结果表明,菜田土壤中四环素类抗生素残留量最高,其次为磺胺类抗生素,温室土壤抗生素残留普遍高于大田土壤.温室和大田土壤磺胺类抗性基因sul1、sul2和四环素类抗性基因tet L的检出率均为100%.温室土壤的Ⅰ类整合子(int I1)检出率比大田土壤高1.5倍.定量PCR的检测结果表明,菜田土壤中sul2和tet L的相对丰度介于10-4~10-2之间,温室土壤sul2和tet L的相对丰度普遍高于大田土壤.sul2的相对丰度与磺胺二甲嘧啶和强力霉素的含量显著正相关(P0.05),tet L相对丰度与抗生素含量无明显相关性(P0.05).本研究结果对于掌握北京地区农田土壤ARGs的污染现状,以及从ARGs角度评估农艺措施具有重要的指导意义.     

金鱼组织中壬基酚的含量检测新方法探讨

建立一种直接检测环境中痕量壬基酚的外切酶保护-荧光定量PCR方法。首先向含雌激素受体及相关蛋白的细胞溶质中加入壬基酚-丙酮溶液,使受体蛋白活化,从而在体外与含雌激素反应位点的双链结合DNA作用形成壬基酚-雌激素受体-DNA复合物。复合物用核酸外切酶和S1核酸酶消解,去除未受到蛋白质保护的结合DNA。将消解后产物作为模板,进行荧光定量PCR扩增反应,建立壬基酚浓度与标准DNA拷贝数的对数之间的线性关系为：y（壬基酚浓度的对数）=1.637x（标准DNA拷贝数的对数）-9.505。该法检出限为10^-8g/L,用该法对金鱼肝脏组织中壬基酚进行检测,添加回收率水平在98.5%112.2%,变异系数在4.3%以下。     

畜禽养殖中沙门氏菌污染的PCR快速检测

针对畜禽养殖是造成农村水环境生物性污染的主要原因,指出用常规生化检测技术耗时长、效率低,不能满足环境管理的要求：应用PCR技术检测沙门氏菌,特异性高、敏感性强、耗时短,与常规分离鉴定方法比较,完全符合实验证明,PCR技术可很好的应用于沙门氏菌污染的调查与监测。     

铜绿假单胞菌增强型绿色荧光蛋白标记的研究

根据增强型绿色荧光蛋白(EGFP)基因设计了上下游引物P1和P2,通过对铜绿假单胞菌菌株X3绿色荧光蛋白标记研究,构建了铜绿假单胞菌标记系统,获得带有EGFP标记的基因工程菌X9,为进行相关的跟踪研究创造了条件.该菌株绿色荧光标记性能稳定.通过转化子基因组DNAPCR和斑点杂交检测,外源EGFP基因存在于转化子染色体上. 图 6参 14     

一种活性污泥总DNA提取方法的优化

对3种活性污泥DNA提取方法———传统蛋白酶K-SDS-氯仿异戊醇法(CPSCI法)、液氮研磨法和脱腐处理法进行了对比,并针对CPSCI法从污泥量、保温时间、裂解方式及沉淀时间等4个方面进行了优化。结果表明,优化的蛋白酶K-氯仿-异戊醇法(OPSCI法)采用污泥量0.10 g、37℃静置10 min,加SDS常温旋涡振荡及异丙醇直接离心等条件可获得长度在23.1 kb左右的DNA,OD260nm/OD280nm为1.86,稀释10倍后即可进行16S rDNA PCR。该方法重复性好,提取得率高,纯度好,操作简便,为常规实验室开展活性污泥微生物多样性研究提供了帮助。     

磁性纳米Fe3O4@C对SBR脱氮除磷性能及其微生物种群组成的影响

为探究磁性纳米Fe₃O₄@C对序批式活性污泥反应器(SBR)污水处理系统脱氮除磷性能的影响,建立了2个相同的SBR(编号分别为0号和1号),其中,0号反应器未投加任何磁性材料(对照组),1号反应器中投加0.5 g·L^-1的Fe₃O₄@C(实验组),并采用高通量测序和实时定量PCR(qPCR)技术对2个反应器内生物种群结构及关键脱氮除磷功能菌群进行分析.结果表明:(1)Fe₃O₄@C对SBR除污性能有显著影响,其中,1号反应器化学需氧量(COD)的去除性能得到增强,24 d后去除率稳定在90%左右;0号和1号反应器总氮(TN)平均去除率分别为35.83%和52.18%;从第43 d起,1号反应器除磷性能明显高于0号反应器,运行70 d后,0号和1号反应器对总磷(TP)的平均去除率分别为47.52%和56.33%.(2)添加Fe₃O₄@C材料后,反应器内变形菌门(Proteobacteria)的...     

我国土壤中苏云金芽孢杆菌的分离与基因型的鉴定

从我国20个省市采集176份土壤中分离出苏云金芽孢杆菌51株.以cry1,cry2,cry3,cry4,cry-n,cry7,cry8,cry11,cry13和cyt的引物作PCR分析.结果表明:4株含有cry4,12株含有cry7,4株含有cry8,4株含有cry1,2株同时含有cry1和cry2,27株无PCR产物.未检测到其它基因型.经电镜扫描伴胞晶体形态多种多样,主要有菱形、球形、方形、多边形和不规则形.图3表3参15     

水稻花药绒毡层特异表达启动子的分离与表达载体构建

从籼稻川75A(OryzasativaL.)黄化苗叶片中直接提取基因组总DNA.根据文献报道的水稻花药绒毡层特异启动子Osg6B序列设计引物,采用TouchdownPCR技术获得水稻花药绒毡层特异表达的启动子Tsp1,将该片段克隆在载体pMD18-TVector上转化到大肠杆菌JM109,并酶切和PCR验证.序列分析发现,该片段与Osg6B启动子同源性为96%,且具有真核生物启动子的多种特征序列,表明启动子Tsp1为来源于籼稻川75A中的水稻花药绒毡层特异表达的启动子.利用该启动子对本实验室保存的质粒pIB467和pIB009进行改造,构建了一个可产生新型雄性不育系的双元植物表达载体pJH401.图7参13     

Characterisation of HTO diffusion properties by an in situ tracer experiment in Opalinus clay at Mont Terri

A long-term single borehole diffusion experiment using tritiated water as tracer was carried out in Opalinus clay, an argillaceous rock formation that is accessible at the Mont Terri Underground Research Laboratory, situated in the Swiss Jura. The tracer was diluted in reconstituted formation water and introduced into a packed-off section of a borehole located in saturated rock. Pressure in this interval was maintained equal to the pore pressure of the surrounding rock in order to prevent any hydraulic gradient around the borehole and to avoid advective transport processes. The evolution of the tracer concentration in the injection system was monitored over time. After 1 year of diffusion, the claystone surrounding the interval was retrieved by overcoring the whole borehole and packer system, and by an adjacent oblique borehole. Compressed air was used as drilling fluid to reduce rock disturbances. The recovered overcore was sampled along profiles perpendicular to the borehole wall with a view to determining the tracer-concentration profiles in the rock. To avoid further evaporation of tritiated water, subsamples were immediately transferred into polyethylene bottles and disaggregated by adding a known amount of tracer-free water. Fifteen profiles were determined and showed a decreasing tracer concentration with distance into the rock. The pore-water contents were constant along those profiles, confirming that only very little water was lost during overcoring operations. The evolution of tritium-tracer concentration in the injection system over time and in situ profiles were interpreted with a 3-D numerical simulation of the experiment. That allowed for the identification of the transport parameters (orthotropic diffusion tensor and porosity) by minimising the relative quadratic error between the experimental and simulated data. The fitting is good and the results are consistent with data obtained on drill-core samples. The result of tritiated water is discussed regarding (1) the potential effect of mechanical and/or chemical disturbances around the injection borehole and (2) the specific behaviour of tritiated water.     

Wet and dry epoch durations of spatially averaged rain rate,their probability distributions and scaling properties

This article is concerned with the notion of duration of wet and dry epochs in stochastic processes of spatially averaged (instantaneous) rain rate over a given region. Gamma, Lognormal, and Inverse Gaussian parametric families of probability distributions have been considered as candidate models for the distribution of such durations. Goodness of these model's fit to data of dry and wet epoch durations obtained from real time series of spatially averaged rain rate, has been tested with Pearson's -test. The parameters of each of these models have been estimated by maximum likelihood and method of moments, based on TOGA-COARE measurements of tropical rainfall. The hypotheses of independence and identical distribution (i.i.d.) among durations of dry or wet epochs have also been tested using a certain version of the Wald-Wolfowitz test. Finally, the effect of spatial scale on the moments of dry and wet epoch durations has also been investigated, pointing to self-similarity of the underlying random structures over space. The main result of this study is that among the three candidate models, Inverse Gaussian is the one conforming most adequately with all the classical testing criteria implemented here, and also with the newly established scaling behavior of both dry and wet epoch duration processes over space. This is a remarkable finding, considering that the Inverse Gaussian family has recently been also justified from a theoretical viewpoint as a reasonable model for the probability distributions of dry and wet epoch durations.