The Novel and Endemic Pathogen Hypotheses: Competing Explanations for the Origin of Emerging Infectious Diseases of Wildlife

Abstract:  Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis , is an emerging infectious disease implicated in declines of amphibian populations around the globe. An emerging infectious disease is one that has recently been discovered; has recently increased in incidence, geography, or host range; or is newly evolved. For any given outbreak of an emerging disease, it is therefore possible to state two hypotheses regarding its origin. The novel pathogen hypothesis states that the disease has recently spread into new geographic areas, whereas the endemic pathogen hypothesis suggests that it has been present in the environment but recently has increased in host range or pathogenicity. Distinguishing between these hypotheses is important, because the conservation measures needed to slow or stop the spread of a novel pathogen are likely to differ from those needed to prevent outbreaks of an endemic pathogen. Population genetics may help discriminate among the possible origins of an emerging disease. Current evidence suggests chytridiomycosis may be a novel pathogen being spread worldwide by carriers; until we know how much genetic variation to expect in an endemic strain, however, we cannot yet conclude that B. dendrobatidis is a novel pathogen.     

Designatable Units for Status Assessment of Endangered Species

Abstract:  Species status assessment and the conservation of biological diversity may require defining units below the species level to portray probabilities of extinction accurately and to help set priorities for conservation efforts. What those units should be has been debated in the scientific literature largely in terms of evolutionarily significant units (ESUs), but this discourse has had little impact on government policy with regard to status assessment. As with species concepts, the variously proposed ESU concepts have not been resolvable into a single approach. The need for a practicable procedure to identify infraspecific entities for status assignment is the motivation behind employing designatable units (DUs). In aid of a policy to prevent elements of biodiversity from becoming extinct or extirpated, DUs are determined during the process of resolving a species' conservation status according to broadly applicable guidelines. The procedure asks whether putative DUs are distinguishable based on a reliably established taxonomy or a well-corroborated phylogeny, compelling evidence of genetic distinction, range disjunction, and/or biogeographic distinction as long as extinction probabilities also differ. The language of the DU approach avoids wording that implies value judgments concerning evolutionary importance or significance. Because species conservation status assessment is not science but, rather, the use of science to further policy, DUs contribute to a precautionary approach to listing whereby status may be assessed even though knowledge of systematic relationships below the species level may be lacking or unresolved. The pragmatic approach of using DUs has been adopted by the Committee on the Status of Endangered Wildlife in Canada for status assessment of species under the Canadian Species at Risk Act.     

Utility of Mitochondrial DNA Barcodes in Species Conservation

Abstract:  Molecular tools are a standard part of many conservation studies and can be informative at many different levels of analysis, although there are inherent limitations and strengths of different genes or parts of genes to inform specific questions. Animal DNA barcodes, 600- to 800-base-pair segments of the mitochondrial gene cytochrome oxidase I, have been proposed as a means to quantify global biodiversity. Although mitochondrial (mt) DNA has a long history of use at the species level, recent analyses suggest that the use of a single gene, particularly mitochondrial, is unlikely to yield data that are balanced, universally acceptable, or sufficient in taxonomic scope to recognize many species lineages. Mitochondrial and nuclear genomes have different patterns of evolution and modes of inheritance, which can result in very different assessments of biodiversity. The ramifications of choosing a particular definition of species (species concept) need to be carefully considered because current efforts have designated DNA barcodes as the universal species concept without demonstrating its superiority over preexisting concepts. The results of such a barcoding paradigm may include a failure to recognize significant portions of biodiversity or nuclear/mitochondrial mixed lineages and could spuriously focus conservation resources on populations with relatively minor mtDNA divergence. DNA barcodes are most likely to provide potentially useful information for groups that are already well studied, and such taxa do not constitute the majority of biodiversity or those in most need of research attention. DNA barcode-length sequences are an important source of data but, when used alone or out of context, may offer only a fraction of the information needed to characterize species while taking resources from broader studies that could produce information essential to robust and informed conservation decisions.     

The Effect of Incremental Reserve Design and Changing Reservation Goals on the Long-Term Efficiency of Reserve Systems

Abstract:  Selecting reserve areas based on percentages, such as 10% or 12% of a bioregion, is common in conservation planning despite widespread admission that such percentages are arbitrary and likely to be inadequate for the conservation of all biodiversity. Reserve systems based on these relatively low percentage targets are likely to require expansion in the future, resulting in the assembly of reserve systems over many years (incremental reserve design). How then will incremental reserve design, such as increasing percentage targets over time, affect the long-term efficiency of marine reserve systems? We used South Australia as a case study to investigate how changing percentage targets affects the contribution of individual planning units to efficient reserve design. Selection frequency counts provided a measure of a planning unit's conservation value. For the majority of planning units, changing targets led to a change in their conservation value indicating, for example, that planning units identified as high-value sites at a low-percentage conservation target may be of lesser importance when targets are increased. Despite the variability in the value of individual planning units at different targets, there was no loss in efficiency from incremental design of reserve systems based on systematic methods compared with purpose-built reserve systems (i.e., the system is assembled in a single iteration). The exception was when incrementally designed systems were based on South Australia's existing marine reserve system—a system developed in an ad hoc method. The result was reserve systems that were less efficient, less compact, and larger in size. This suggests that systematic approaches have an important role for efficient reserve design when there is uncertainty about the target level of reservation .     

Assessment of Effectiveness of Protection Strategies in Tanzania Based on a Decade of Survey Data for Large Herbivores

Abstract:  Considerable controversy surrounds the effectiveness of strictly protected areas that prohibit consumptive resource use. For Tanzania we compared temporal changes in densities of large herbivores among heavily protected national parks and game reserves, partially protected game-controlled areas, and areas with little or no protection. Comparisons based on surveys conducted in the late 1980s and early 1990s versus the late 1990s and early 2000s showed three consistent patterns across the country. First, significant declines in the densities of large herbivores between these two snapshots in time overwhelmingly outnumbered significant increases in all protection categories. Second, more species fared well (increased significantly or showed no significant change) in strictly protected national parks than in areas with partial or no protection and in heavily protected game reserves relative to areas with no protection. Third, significantly more species fared poorly (densities declined or were too low to detect a decline) than fared well in areas with partial or no protection. Our results show that although heavy protection was generally more effective in maintaining large herbivore populations than partial or no protection, continued long-term monitoring is needed in Tanzania to inform managers whether large herbivores are experiencing declining population trends even within heavily protected areas .     

The Effectiveness of Iberian Protected Areas in Conserving Terrestrial Biodiversity

Abstract:  The Iberian Peninsula harbors about 50% of European plant and terrestrial vertebrate species and more than 30% of European endemic species. Despite the global recognition of its importance, the selection of protected areas has been ad hoc and the effectiveness of such choices has rarely been assessed. We compiled the most comprehensive distributional data set of Iberian terrestrial plant and vertebrate species available to date and used it to assess the degree of species representation within existing protected areas. Existing protected areas in Spain and Portugal reasonably represented the plant and animal species we considered (73–98%). Nevertheless, species of some groups (amphibians, reptiles, birds, and gymnosperms) did not accumulate in protected areas at a rate higher than expected by chance ( p > 0.05). We determined that to conserve all vertebrate and plant species in the Iberian Peninsula, at least 36 additional areas are needed. Selection of additional areas for conservation would be facilitated if such areas coincided with sites of community importance (SCI) designated under the European Commission Habitats Directive. Additional areas required for full representation of the selected plant and animal species all coincide with SCI in Spain. Nevertheless, the degree of coincidence varies between 0.3% and 74.6%, and there is a possibility that important areas for conservation occur outside the SCI. Our results support the view that current SCI can be used for prioritization of areas for conservation, but a systematic reevaluation of conservation priorities in Spain and Portugal would be necessary to ensure that effective conservation of one of European's most important biodiversity regions is achieved.