Alteration of dominant cyanobacteria in different bloom periods caused by abiotic factors and species interactions

Freshwater cyanobacterial blooms have drawn public attention because they threaten the safety of water resources and human health worldwide. Heavy cyanobacterial blooms outbreak in Lake Taihu in summer annually and vanish in other months. To find out the factors impacting the cyanobacterial blooms, the present study measured the physicochemical parameters of water and investigated the composition of microbial community using the 16S rRNA gene and internal transcribed spacer amplicon sequencing in the months with or without bloom. The most interesting finding is that two major cyanobacteria, Planktothrix and Microcystis, dramatically alternated during a cyanobacterial bloom in 2016, which is less mentioned in previous studies. When the temperature of the water began increasing in July, Planktothrix appeared first and showed as a superior competitor for M. aeruginosa in NO₃^?-rich conditions. Microcystis became the dominant genus when the water temperature increased further in August. Laboratory experiments confirmed the influence of temperature and the total dissolved nitrogen (TDN) form on the growth of Planktothrix and Microcystis in a co-culture system. Besides, species interactions between cyanobacteria and non-cyanobacterial microorganisms, especially the prokaryotes, also played a key role in the alteration of Planktothrix and Microcystis. The present study exhibited the alteration of two dominant cyanobacteria in the different bloom periods caused by the temperature, TDN forms as well as the species interactions. These results helped the better understanding of cyanobacterial blooms and the factors which contribute to them.     

Ecological effects of crude oil residues on the functional diversity of soil microorganisms in three weed rhizospheres

Ecological effects of crude oil residues on weed rhizospheres are still vague. The quantitative and diversity changes and metabolic responses of soil-bacterial communities in common dandelion （Taraxacum officinale）, jerusalem artichoke （Silphiurn perfoliatum L.） and evening primrose （A colypha australis L.） rhizospheric soils were thus examined using the method of carbon source utilization. The results indicated that there were various toxic effects of crude oil residues on the growth and reproduction of soil bacteria, but the weed rhizospheres could mitigate the toxic effects. Total heterotrophic counting colony-forming units （CFUs） in the rhizospheric soils were significantly higher than those in the non-rhizospheric soils. The culturable soil-bacterial CFUs in the jerusalem artichoke （S. perfoliatum） rhizosphere polluted with 0.50 kg/pot of crude oil residues were almost twice as much as those with 0.25 kg/pot and without the addition of crude oil residues. The addition of crude oil residues increased the difference in substrate evenness, substrate richness, and substrate diversity between non-rhizospheric and rhizospheric soils of T. officinale and A. australis, but there was no significant （p〉0.05） difference in the Shannon＇s diversity index between non-rhizospheric and rhizospheric soils of S. perfoliatum. The rhizospheric response of weed species to crude oil residues suggested that S. perfoliatum may be a potential weed species for the effective plant-microorganism bioremediation of contaminated soils by crude oil residues.     

Selecting Species for Marine Assessment of Radionuclides Around Amchitka: Planning for Diverse Goals and Interests

Considerable attention has been devoted to selecting bioindicator species as part of monitoring programs for exposure and effects from contaminants in the environment. Yet the rationale for selection of bioindicators is often literature-based, rather than developed with a firm site-specific base of data on contaminant levels in a diverse range of organisms at different trophic levels in the same ecosystem. We suggest that this latter step is an important phase in the environmental assessment process that is often missing. In this paper we address the problem of how to select a wide range of species representing different trophic levels that serve as a basis for selecting a few species suitable as bioindicators. We illustrate this with our assessment of radionuclides on Amchitka Island, Alaska. We propose a multi-stage process for arriving at the list of available species that includes review of literature, review by experts experienced in the area, review by interested and affected parties, selection of trophic levels or groups for analysis, arraying of possible species, and selection of species within each trophic level group for sample collection. We first had to identify all likely species, then narrow our focus to those we could collect and analyze. In all cases, review includes suggestions for possible target species with justifications. While this method increases the up-front costs of developing bioindicators for an ecosystem, it has the advantage of providing information for selection of species that will be most informative in the long run, including those that are the best bioaccumulators, thus providing the earliest warning of any potential environmental consequences. Further, the recognition that a range of stakeholder's needs and interests should be included increases the utility for public-policy makers, and the potential for continued usage to establish long-term trends.     

Mapping the Spatial Variability of Plant Diversity in a Tropical Forest: Comparison of Spatial Interpolation Methods

Knowledge of the spatial distribution of plant species is essential to conservation and forest managers in order to identify high priority areas such as vulnerable species and habitats, and designate areas for reserves, refuges and other protected areas. A reliable map of the diversity of plant species over the landscape is an invaluable tool for such purposes. In this study, the number of species, the exponent Shannon and the reciprocal Simpson indices, calculated from 141 quadrat sites sampled in a tropical forest were used to compare the performance of several spatial interpolation techniques used to prepare a map of plant diversity, starting from sample (point) data over the landscape. Means of mapped classes, inverse distance functions, kriging and co-kriging, both, applied over the entire studied landscape and also applied within vegetation classes, were the procedures compared. Significant differences in plant diversity indices between classes demonstrated the usefulness of boundaries between vegetation types, mapped through satellite image classification, in stratifying the variability of plant diversity over the landscape. These mapped classes, improved the accuracy of the interpolation methods when they were used as prior information for stratification of the area. Spatial interpolation by co-kriging performed among the poorest interpolators due to the poor correlation between the plant diversity variables and vegetation indices computed by remote sensing and used as covariables. This indicated that the latter are not suitable covariates of plant diversity indices. Finally, a within-class kriging interpolator yielded the most accurate estimates of plant diversity values. This interpolator not only provided the most accurate estimates by accounting for the indices' intra-class variability, but also provided additional useful interpretations of the structure of spatial variability of diversity values through the interpretation of their semi-variograms. This additional role was found very useful in aiding decisions in conservation planning.     

The Influence of Linear Elements on Plant Species Diversity of Mediterranean Rural Landscapes: Assessment of Different Indices and Statistical Approaches

This paper mainly aims to study the linear element influence on the estimation of vascular plant species diversity in five Mediterranean landscapes modeled as land cover patch mosaics. These landscapes have several core habitats and a different set of linear elements -habitat edges or ecotones, roads or railways, rivers, streams and hedgerows on farm land- whose plant composition were examined. Secondly, it aims to check plant diversity estimation in Mediterranean landscapes using parametric and non-parametric procedures, with two indices: Species richness and Shannon index.Land cover types and landscape linear elements were identified from aerial photographs. Their spatial information was processed using GIS techniques. Field plots were selected using a stratified sampling design according to relieve and tree density of each habitat type. A 50×20 m² multi-scale sampling plot was designed for the core habitats and across the main landscape linear elements. Richness and diversity of plant species were estimated by comparing the observed field data to ICE (Incidence-based Coverage Estimator) and ACE (Abundance-based Coverage Estimator) non-parametric estimators.The species density, percentage of unique species, and alpha diversity per plot were significantly higher (p < 0.05) in linear elements than in core habitats. ICE estimate of number of species was 32% higher than of ACE estimate, which did not differ significantly from the observed values. Accumulated species richness in core habitats together with linear elements, were significantly higher than those recorded only in the core habitats in all the landscapes. Conversely, Shannon diversity index did not show significant differences.     

都昌县多宝砂山物种多样性研究及保护初探

对鄱阳湖都昌县多宝砂山地区土地风沙化过程中物种多样性的变化特征进行了分析,依据植物种在各类型风沙化土地的出现频率与不同风沙化阶段各生活型植物种的组成,探讨了风沙化过程中植物种的绝灭与定居特点.物种多样性指数分析表明:风沙化过程是物种多样性衰减的过程,风沙化首先导致特有种的绝灭,其次为稀有种.从植物的生活型来看,多年生草本与乔木类植物受风沙化影响最大,而灌木类植物可存活于风沙化过程的各个阶段,在风沙化过程中植物种的绝灭速率大于定居速率.最后,针对造成多宝砂山生物多样性衰减的原因,提出了治理对策,即在控制人类行为干扰的同时,要加强对固定沙丘的管理与保护.      

贵州喀斯特山区不同种植年限花椒根际土壤细菌群落结构特征研究

以贵州花江峡谷花椒(Zanthoxylum bungeamun)林为研究对象,采用16S rRNA高通量测序技术,分析种植5、10、20、30 a花椒根际土壤细菌群落结构和多样性特征,探讨不同种植年限花椒土壤理化因子对根际细菌群落分布的影响,为喀斯特石漠化地区花椒农业可持续发展提供有效的理论依据.结果表明,随着花椒种植...     

Changes in soil characteristics and plant species composition along a moisture gradient in a Mediterranean pasture

Soil physicochemical characteristics, total aboveground biomass, number of species and relative abundance of groups and individual species were measured along a moisture gradient in a pasture, flooded in part during winter through early summer, adjacent to Pamvotis lake in Ioannina, Greece. Soil and vegetation measurements were conducted in 39 quadrats arranged in four zones perpendicular to the moisture gradient. The zone closest to the lake, recently separated from the lake, became part of the pasture and its soil texture was quite different from that of the other zones with a substrate containing 91% sand. Except for pH, this zone had the lowest values in the other five soil physicochemical characteristics measured (organic matter, total and extracted inorganic nitrogen, Olsen extracted phosphorus and extractable potassium); in the other zones organic matter, total nitrogen, phosphorus and potassium tended to increase from the driest to the wettest zone. Total aboveground biomass, ranging from 280 to 840 gm-2, is high for herbaceous pastures in the conditions of Mediterranean climate and it was not related to distance from the lake's shoreline, although the highest values were measured at intermediate distances, or to any of the various soil characteristics measured. Also, the number of species/0.25 m2 was not related to any of the various soil characteristics, but it was highest at the intermediate distances from the lake's shoreline. Species composition varied along the moisture gradient. Forbs as well as annual grasses and legumes declined in abundance from the driest to the wettest places; the reverse was the case for sedges and perennial grasses and legumes. These results indicate that the soil moisture gradient was the principal factor affecting soil characteristics and plant species composition. Since most species were recorded in all the four zones of the pasture, indicating that these can tolerate all variations in abiotic conditions of pasture, the vegetation zonation seems to be influenced by competition. Each functional group of species tends to dominate in a particular range of the soil moisture gradient where it is better suited and tends to exclude competitively other species. Management practices (mowing and grazing) affect the kinds of processes which maintain the observed community structure either by preventing the establishment of later successional species, like reeds and woody species, or by moderating the shoot competition, especially in the wetter zones, and thus permitting the creeping species to grow successfully.     

南京仙林地区安置小区木本植物组成与多样性分析

对南京仙林地区12个安置小区的木本植物随机分层抽样调查,利用频度、多度及物种多样性指数对调查结果作分析研究。结果表明:12个安置小区乔木层和灌木层的物种组成简单,以常见的园林栽培植物为主,香樟、桂花、海桐和冬青卫矛有较大的优势,整体物种相似性水平为0. 41,物种多样性偏低。改善小区物种组成、提升物种多样性、加强绿化景观维护与建设是管理者后期应重点关注的问题。     

秸秆发酵乳酸菌复合系SFC-2的构建及其组成多样性研究

为了获得促进作物干秸秆乳酸发酵的微生物,以玉米秸秆和水稻秸秆的自然发酵物为菌种来源,用MRS蔗糖培养基,通过连续定向继代培养,筛选出pH下降迅速、乳酸含量高、组成稳定的乳酸菌复合系SFC-2.DGGE分析表明,SFC-2经过连续继代培养,从第25代开始其微生物组成基本稳定.SFC-2 培养12 h后pH下降至3.8,乳酸含量达10.64 mg/mL,其中64%为L-(+) 乳酸.通过平板分离获得4株细菌,全部为Lactobacillus,其近缘种分别为L. fermentum、L. plantarum、L. paracasei和L. paracasei sub sp.;通过16S rDNA克隆文库分析获得7个克隆,其近缘种主要为L. fermentum、L. plantarum及L.paracasei;在16S rDNA的克隆文库中,76.3%为L. fermentum的近缘种,20.3%为L. plantarum的近缘种,3.4%为L. paracasei的近缘种.