Use of carrion fly iDNA metabarcoding to monitor invasive and native mammals

Severely fragmented habitats increase the risk of extirpation of native mammal populations through isolation, increased edge effects, and predation. Therefore, monitoring the movement of mammal populations through anthropogenically altered landscapes can inform conservation. We used metabarcoding of invertebrate-derived DNA (iDNA) from carrion flies (Calliphoridae and Sarcophagidae) to track mammal populations in the wheat belt of southwestern Australia, where widespread clearing for agriculture has removed most of the native perennial vegetation and replaced it with an agricultural system. We investigated whether the localization of the iDNA signal reflected the predicted distribution of 4 native species—echidna (Tachyglossus aculeatus), numbat (Myrmecobius fasciatus), woylie (Bettongia penicillata), and chuditch (Dasyurus geoffroii)—and 2 non-native, invasive mammal species—fox (Vulpes vulpes) and feral cat (Felis catus). We collected bulk iDNA samples (n = 150 samples from 3428 carrion flies) at 3 time points from 3 conservation reserves and 35 road edges between them. We detected 14 of the 40 mammal species known from the region, including our target species. Most detections of target taxa were in conservation reserves. There were a few detections from road edges. We detected foxes and feral cats throughout the study area, including all conservation reserves. There was a significant difference between the diversity (F_3, 98 = 5.91, p < 0.001) and composition (F_3, 43 = 1.72, p < 0.01) of taxa detections on road edges and conservation reserves. Conservation reserves hosted more native biodiversity than road edges. Our results suggest that the signals from iDNA reflect the known distribution of target mammals in this region. The development of iDNA methods shows promise for future noninvasive monitoring of mammals. With further development, iDNA metabarcoding could inform decision-making related to conservation of endangered taxa, invasive species management, and impacts of habitat fragmentation.     

《昆明-蒙特利尔全球生物多样性框架》下的生物多样性监测

生物多样性监测是执行和评估《昆明-蒙特利尔全球生物多样性保护框架》（简称《昆-蒙框架》）长期目标和行动指标所需要的关键数据的主要来源。简要介绍了《昆-蒙框架》下的全球生物多样性观测网络（The global biodiversity observation network,GEO BON）概况、中国已有的生物多样性监测/观测网络,构建全球生物多样性观测系统（A global biodiversity observation system,GBiOS）的目的和核心监测指标,分析了生物多样性监测网络建设的一般步骤和GEO BON建议的4种生物多样性监测新方法。提出,地理空间单元与生物类群的全覆盖监测是建设生物多样性监测网络的主要目标,传统监测方法和新监测技术的互补是当前生物多样性监测的重点工作内容。     

Bisphenol S induces oxidative stress and DNA damage in rat spermatozoa in vitro and disrupts daily sperm production in vivo

Bisphenol S has been introduced into some industrial applications and it may act as a xeno-estrogen that can alter endocrine functions and reproduction. The present study was carried out to examine the effect of bisphenol S exposure on oxidative stress, generation of reactive oxygen species, and DNA integrity in rat spermatozoa in vitro and daily sperm production and sperm DNA damage in vivo. Sperm were incubated with bisphenol S at concentrations of 0.5, 1, 10, and 100 µg/L. At the highest concentration, bisphenol S induced formation of reactive oxygen species, caused lipid peroxidation, affected superoxide dismutase levels, and increased DNA fragmentation. Adult rats were exposed to doses of 0.5, 5, 25, and 50 µg/kg/d for 28 days. Decrease in daily sperm production and an increase in sperm DNA damage was observed at the highest dose in the 50 µg/kg/d treated group, but sperm motility was not reduced.     

采用光谱学技术分析邻苯二甲酸酯与DNA互作机制

邻苯二甲酸酯(PAEs)作为增塑剂被广泛使用,易渗透到环境中产生环境毒性,多种PAEs已被美国环境保护署和中国环境监测中心列为优先控制污染物,其生态毒理学机制被广泛关注。本试验以小牛胸腺DNA(ct DNA)为供试材料,旨在通过光谱学技术探究PAEs与DNA的相互作用机制。在紫外可见光谱试验中,随着PAEs浓度的增加,DNA紫外光谱出现增色效应,证明DNA的部分碱基对被PAEs破坏,且PAEs与DNA通过嵌插作用结合。荧光光谱试验中,随着PAEs浓度的增加,EBct DNA体系荧光强度逐渐降低,邻苯二甲酸二甲酯(DMP)、邻苯二甲酸二乙酯(DEP)和邻苯二甲酸二丁酯(DBP)的最大荧光抑制率分别为55%、50%和36%;KI荧光猝灭试验中,在加入DNA之后KI对DMP、DEP和DBP的荧光猝灭常数Ksv分别从7.992(R2=0.9970)、10.270(R2=0.9960)和13.52(R2=0.9806)降低到6.721(R2=0.9963)、7.047(R2=0.9599)和11.03(R2=0.9803),荧光猝灭常数均降低,实验结果证明PAEs与DNA通过嵌插作用结合。盐离子试验中,随着Na Cl浓度的增加,PAEsct DNA的荧光强度没有发生变化。试验结果排除了PAEs与DNA分子之间沟槽作用的可能,确定了其结合方式为嵌插作用,随着PAEs侧链的逐渐增长,嵌插作用逐渐减弱。     

Sexual conflict over fertilizations: female bluethroats escape male paternity guards

Extra-pair copulations create a potential for sexual conflict in pair-bonding birds. Here we report an experimental study of the bluethroat, Luscinia s. svecica, in which the throat ornament of males was blackened with Nyanzol D in order to reduce their sexual attractiveness and thus increase the sexual conflict over fertilizations. In an earlier study, we showed that males blackened before pairing had a lower success in attracting social mates than controls, whereas males blackened after pairing guarded their mates more intensely and sang less than controls. Here we add behavioural data from one more year on males blackened after pairing and corroborate our previous finding that the manipulation caused males to guard their mates more intensely and advertise less for additional mates. Blackened males did not suffer more intrusions from neighbouring males than did controls. Paternity analyses of the combined data set, using multilocus DNA fingerprinting and microsatellite typing, revealed that blackened males lost significantly more paternity than controls. There was also a tendency for blackened males to show a lower success in achieving extra-pair fertilizations. These results indicate that females have the upper hand in the sexual conflict over fertilizations, as females paired with unattractive males can achieve more extra-pair paternity despite the greater constraint posed by the intensified mate guarding. Still, within the blackened group, there were some indications that males guarding more intensely and singing less had higher paternity than males guarding less and singing more, suggesting a marginal positive effect of guarding for unattractive males. Male mate guarding must nevertheless be considered a best-of-a-bad-job strategy in this species. Received: 4 December 1997 / Accepted after revision: 14 June 1998     

Nestmate recognition and the genetic relatedness of nests in the ant Formica pratensis

Genetic relatedness of the mound-building ant Formica pratensis was determined by means of microsatellite DNA polymorphism, and its impact on nestmate recognition was tested in a population in Southern Sweden (Oeland). Recognition between nests was measured by testing aggression levels between single pairs of workers. The genetic distances of nests (Nei's genetic distance) and the spatial distance of nests were correlated and both showed a strong relation to the aggression behavior. Multiple regression analysis revealed a stronger impact of genetic relatedness rather than spatial distances on aggression behavior. Neighbouring nests were more closely related than distant nests, which may reflect budding as a possible spreading mechanism. The genetic distance data showed that nestmate recognition was strongly genetically influenced in F. pratensis. Received: 2 October 1997 / Accepted after revision: 10 January 1998     

萘降解质粒pND6的分离和鉴定

从工业废水中分离的假单胞菌 (Pseudomonassp .)ND6菌株 ,能以萘为唯一碳源生长 ,使无机盐培养基(MM)中 2g/L的萘在 48h内降解 98% .该菌株含有一个 115kb的大质粒pND6 .DNA杂交实验表明 ,pND6质粒含有与恶臭假单胞菌 (P .putida)G7菌株的NAH7质粒同源的萘降解基因 .图 3表 1参 14     

大鼠类Alu重复序列的克隆及其在染色体DNA突变分析中的应用

从大鼠低Ｃｏｔ值ＤＮＡ文库分离到一种类Ａｌｕ的重复序列,命名为ＲＡＬＲＳ－１。对ＲＡＬＲＳ－１克隆并进行了测序,长度为２８３ｂｐ,发现其中含有单一的微卫星（ｍｉｃｒｏｓａｔｅｌｌｉｔｅ）序列ＡＧ,ＡＧＧ和ＡＧＧＧ。ＲＡＬＲＳ－１ＤＮＡ序列在大鼠单倍体基因组中的拷贝数为１５００００～３３００００。依ＲＡＬＲＳ－１中的一段序列合成了一２８寡核苷酸探针（ＡＧＧＧ）７,对大鼠正常组织和肿瘤组织ＤＮＡ指数谱     

Amplification of plasmid DNA bound on soil colloidal particles and clay minerals by the polymerase chain reaction

Polymerase chain reaction(PCR)was used to amplify a 600-base pair(bp)sequence of plasmid pGEX-2T DNA bound on soil colloidal particles from Brown soil(Alfisol)and Red soil(Ultisol),and three different minerals(goethite,kaolinite,montmorillonite). DNA bound on soil colloids,kaolinite,and montmorillonite was not amplified when the complexes were used directly but amplification occurred when the soil colloid or kaolinite-DNA complex was diluted,10- and 20-fold.The montmorillonite-DNA complex required at least 100-fold dilution before amplification could be detected.DNA bound on goethile was amplified irrespective of whether the complex was used directly,or diluted 10- and 20-fold.The amplification of mineral-bound plasmid DNA by PCR is,therefore,markedly influenced by the type and concentration of minerals used.This information is of fundamental importance to soil molecular microbial ecology with particular reference to monitoring the fate of genetically engineered microorganisms and their recombinant DNA in soil environments.     

催化铁内电解法预处理对后续生物过程的影响

本文研究了催化铁内电解预处理对后续生物反应器中活性污泥以及微生物的影响。经催化铁内电解处理后的污水带有大量的Fe^2＋和Fe^3＋进入生物处理阶段,EPS中蛋白质与多糖的比值提高,活性污泥的沉降性能也得以改善,沉降速度比对照组提高4．2倍;Fe^3＋使微生物物种多样性增加,与EPS的结合形式,改善了菌体之间的连接,增强了污泥对污染物的吸附和絮凝,EPS中吸咐污染物比对照组多约12．5mgTOC／gVSS。