基于Miseq的好氧反硝化菌源水脱氮的种群演变

为了研究好氧反硝化菌源水脱氮过程中水体微生物群落的演变,利用Miseq高通量测序法对投菌和对照两系统水体样本的微生物信息进行统计,并对两组样品进行了优化序列统计,OTU分布统计和分类学分析的基础分析;以及细菌群落结构,PCA,Rank-Abundance,Hcluster,Specaccum和OTU分布的高级分析.结果显示,投加贫营养好氧反硝化菌的源水系统的氮素得到有效去除,脱氮效果明显;层次聚类和主成分分析显示两系统内的群落结构发生变化,投菌系统与对照系统主要表现为变形菌和拟杆菌门;细菌主要门类和水质参数的相关性分析得出,水质指标对两系统群落变化作用明显;与此同时,投菌系统中有关氮循环的细菌有上升的变化过程. Miseq高通量测序研究源水脱氮过程的微生物种群演变可行,为研究原位生物脱氮过程的水体微生物群落演变提供技术支撑.     

东海海域表层沉积物中硫酸盐还原菌分布特征研究

利用2011年4、7、8和10月对东海海域4个航次的调查资料,以表层沉积物中硫酸盐还原菌（SRB）为研究对象,针对于SRB所共有的异化型亚硫酸盐还原酶（DSR）中的β亚基基因（dsrB）,通过荧光定量PCR技术对SRB丰度的时空分布特征进行了描述.结果表明,SRB丰度变化范围为1.87×105~4.69×10⁸cells/g,平均值为1.15×10⁸cells/g,且4月SRB丰度最低,7月SRB丰度最高;SRB数量在总细菌中的比例介于0.0039%~1.6176%之间,说明SRB在东海表层沉积物的细菌总量中比例很小;SRB丰度的水平分布特征整体表现为南部海域高于北部海域,长江口及浙闽沿岸泥质区高于非泥质区.此外,SRB丰度与环境因子的相关性分析表明,温度和溶解氧是影响SRB丰度的重要因素.     

Effects of salinity on soil bacterial and archaeal community in estuarine wetlands and its implications for carbon sequestration: verification in the Yellow River Delta

Soils from two typical tidal salt marshes with varied salinity in the Yellow River Delta wetland were analysed to determine possible effects of salinity on soil carbon sequestration through changes in soil microbiology. The mean soil respiration (SR) of the salt water–fresh water mixing zone (MZ) was 2.89 times higher than that of the coastal zone (CZ) (4.73 and 1.63?μmol?m^?2?s^?1, respectively, p?Pseudomonas sp. and Limnobacter sp. that might have led to its higher dehydrogenase activity and respiratory rates. Additionally, the CZ possessed more Halobacteria and Thaumarchaeota with the ability to fix CO₂ than the MZ. Significantly lower soil salinity in MZ (4.25?g?kg^?1) was suitable for β-Proteobacteria, but detrimental for Halobacteria compared with CZ (7.09?g?kg^?1, p?相似文献   

Impact of heavy metals on bacterial communities from mangrove soils of the Mahanadi Delta (India)

This study aimed to assess soil nutrient status and heavy metal content and their impact on the predominant soil bacterial communities of mangroves of the Mahanadi Delta. Mangrove soil of the Mahanadi Delta is slightly acidic and the levels of soil nutrients such as carbon, nitrogen, phosphorous and potash vary with season and site. The seasonal average concentrations (μg/g) of various heavy metals were in the range: 14 810–63 370 (Fe), 2.8–32.6 (Cu), 13.4–55.7 (Ni), 1.8–7.9 (Cd), 16.6–54.7 (Pb), 24.4–132.5 (Zn) and 13.3–48.2 (Co). Among the different heavy metals analysed, Co, Cu and Cd were above their permissible limits, as prescribed by Indian Standards (Co=17 μg/g, Cu=30 μ g/g, Cd=3–6 μ g/g), indicating pollution in the mangrove soil. A viable plate count revealed the presence of different groups of bacteria in the mangrove soil, i.e. heterotrophs, free-living N₂ fixers, nitrifyers, denitrifyers, phosphate solubilisers, cellulose degraders and sulfur oxidisers. Principal component analysis performed using multivariate statistical methods showed a positive relationship between soil nutrients and microbial load. Whereas metal content such as Cu, Co and Ni showed a negative impact on some of the studied soil bacteria.     

Influence of slope aspect on soil physico-chemical and biological properties in the mid hills of central Nepal

This study assessed the influence of slope aspect and land use on soil physio-chemical and biological properties (soil quality indicators) on contiguous south- and north-facing slopes of the mid hills in central Nepal, having the same climate, vegetation and parent material. In each aspect, two treatments (agriculture and forest) were chosen and four replicates taken for each treatment. Soil sample collection and microarthropod extraction was done according to the standard methodology: soil core samples (10 × 10 × 5 cm) and extraction with the modified Berlese–Tullgren funnel. The investigated soil variables were temperature, moisture, faunal abundance and diversity, organic matter, organic carbon, bulk density and pH. Except in a few cases, all considered soil properties showed significant differences between aspects and land use. Soils of the north-facing slope had higher SOC content, moisture, faunal abundance and diversity, and lower temperature and pH. Variations due to topographic aspect induced varied microclimates, causing differences in faunal abundance and diversity; soil moisture, temperature and organic matter trends affected soil fertility and ultimately soil quality. Further studies are required to clarify the complex interactions between soil properties (physio-chemical and biological), vegetation and slope aspect in Nepal, as well as to develop soil biological indicators as a tool to assist in sustainable land management.     

环境DNA(eDNA)宏条形码技术对枝角类浮游动物物种鉴定及其生物量监测研究

环境DNA(eDNA)宏条形码(Metabarcoding)技术越来越多地被应用于环境中物种定性识别,但如何定量监测物种在环境中的丰度尚未得到解决。本研究以太湖流域常见的5种浮游动物拟同形溞、大型溞、蚤状溞、多刺裸腹溞、老年低额溞为研究对象,建立了一种基于eDNA宏条形码技术的物种定量方法,并与实时荧光定量PCR(qPCR)相比较,研究了eDNA宏条形码技术多物种定量的准确性。结果表明,PCR引物对eDNA宏条形码的物种检测和定量影响显著。313 bp COI313引物对浮游动物物种覆盖度高,但是物种间DNA扩增的偏好性大,不适用于eDNA宏条形码定量检测。基于COI序列重新设计的短COI116引物能够同时检测出所有5个物种。荧光定量PCR(qPCR)物种拷贝数与物种相对占比呈正相关。eDNA宏条形码所检出每个物种的序列数与qPCR定量拷贝数高度一致。综上,eDNA宏条形码技术可实现对浮游动物物种的半定量检测,在生物多样性监测和生物完整性评价有显著的应用价值。     

堆肥添加剂降低碳氮损失的微生物学机制研究

为了探明添加剂如何影响堆肥微生物优势群落的演替进而影响碳氮损失,以玉米秸秆和鸡粪为原料,添加不同量的生物质炭和凹凸棒作为添加剂,设置5个处理（CK （鸡粪+玉米秸秆）、BC1（鸡粪+玉米秸秆+5%（干重）生物质炭）、BC2（鸡粪+玉米秸秆+10%（干重）生物质炭）、PG1（鸡粪+玉米秸秆+5%（干重）凹凸棒）和PG2（鸡粪+玉米秸秆+10%（干重）凹凸棒））进行堆肥.结果表明,相较于CK,BC1、BC2、PG1、PG2处理的碳和氮损失分别减少了8.60%、12.05%、2.03%、6.14%和14.54%、20.14%、8.40%、11.23%.优势微生物菌群与碳氮损失的冗余分析表明,添加10%生物质炭和添加10%凹凸棒都显著促进了堆肥过程中固氮类细菌相对丰度,而抑制反硝化细菌的相对丰度,且添加10%生物质炭效果更佳;KEGG分析表明,添加10%生物质炭显著影响氨基酸代谢和碳水化合物代谢功能基因,而添加10%凹凸棒显著影响氨基酸代谢功能基因.由此可见,10%添加剂的碳氮损失都低于5%添加剂的处理,添加生物质炭的碳氮损失都低于凹凸棒处理,添加剂通过影响优势微生物群落及其氨基酸代谢和碳水化合物代谢功能基因抑制堆肥过程中的碳氮代谢,从而减少碳氮损失.     

厌氧氨氧化启动过程细菌群落多样性及PICRUSt2功能预测分析

细菌群落是实现厌氧氨氧化系统高效脱氮的核心,而厌氧氨氧化启动过程细菌群落多样性及其功能特征仍未被充分阐明.本研究采用升流式厌氧污泥床（UASB）反应器进行厌氧氨氧化系统启动,利用16S rRNA基因高通量测序技术并结合PICRUSt2功能预测分析,研究启动过程不同时间（d0、d30、d60和d90）细菌群落多样性及功能动态变化特征.结果表明,启动过程共检测到48个门、111个纲、269个目、457个科、840个属和1497个种;Candidatus_Brocadia和Candidatus_Kuenenia为检测到的厌氧氨氧化菌,且它们的相对丰度在启动过程不同时间存在显著差异（P<0.05）.启动过程,细菌群落α多样性指数整体呈现显著的降低趋势（P<0.05）,细菌群落结构呈现出明显的空间分异特征,且差异显著（R=0.846,P<0.01）.PICRUSt2功能预测分析表明,启动过程,细菌群落具有丰富的功能多样性,一级功能层表现为有机系统和代谢方面较为活跃,二级功能层子功能基因丰度在厌氧氨氧化启动过程发生明显变化;细菌群落涉及49个参与氮素代谢的相关功能基因,且不同时间阶段参与硝化、反硝化、厌氧氨氧化、硝酸盐同化/异化还原和亚硝酸盐同化/异化还原过程的相关功能基因丰度发生明显变化.     

低温驯化对自养脱氮颗粒污泥功能活性与菌群结构的影响分析

低温驯化是提高部分亚硝化-厌氧氨氧化（PN/A）组合工艺低温脱氮效能和运行稳定性的有效方法.为探究低温驯化对污泥特性的具体影响,本文从温度敏感性、颗粒外观形态、胞外聚合物（EPS）组成和微生物群落结构等方面,对中高温培养（30℃）和低温驯化（15℃）PN/A颗粒污泥之间的差异性进行了分析.反应热力学的研究结果表明,驯化污泥（G_L）在低温区（10~20℃）的脱氮性能较中高温培养污泥（G_H）有了显著提高,总无机氮去除的表观反应活化能（E_a）降低了28.4%.与G_H相比,G_L的平均粒径减小了25.8%,EPS含量增长了16.6%,颗粒的沉降性能明显下降.由高通量测序结果可知,G_L具有更高的菌群多样性,同时,污泥中好氧氨氧化菌（Nitrosomonas）与厌氧氨氧化菌（Candidatus_Kuenenia）的丰度比值（0.04）远小于G_H的0.34.这意味着颗粒污泥在低温环境中对慢速生长自养菌仍具有较强的截留能力.上述发现为解析PN/A污泥在低温条件下的自适应机制,推动组合工艺的工程化应用提供了重要参考.     

钻井废弃液中石油污染物及细菌生态多样性

采用GC/MS分析方法,发现平湖油田钻井废弃液中含有烃类、酸类和酯类等23种有机污染物质,含量达到49 800 mg/L。运用16S rRNA基因分析法测得的微生物生态多样性表明,废弃液中微生物种类丰富,包括γ和β变形杆菌,γ-Proteobacteria是优势菌群,占克隆总数78.6%。Oceanospirillales、Pseudomonadales和Enterobacteriales是γ-Proteobacteria纲的主要菌群。