连云港海底底泥及青海湖底泥细菌多样性研究

通过对不同盐环境连云港海底底泥和青海湖底泥样品构建细菌16S rRNA克隆文库,对2个环境样品中细菌群落的多样性、丰富度和优势度等进行了比较,并对其群落组成结构进行了分析.结果表明,连云港海底底泥文库的多样性指数Shannon diversity（H）达到3.53,青海湖底泥文库的Shannon diversity（H...     

苦草叶表附生和水体浮游细菌群落多样性格局及其影响因素

浮游与附生细菌群落在湿地氮污染物去除及其水质净化方面具有重要作用,然而与湿地土壤细菌群落相比,它们的群落动态还远未被了解.以榆古桥人工湿地水体浮游细菌群落和常见沉水植物苦草(Vallisneria natans)叶表附生细菌群落为研究对象,通过高通量测序的方法对浮游和附生细菌群落的组成、结构与功能多样性进行了比较分析.结果表明,浮游与附生细菌群落的组成具有显著差异,相比浮游细菌群落,附生细菌群落中存在更多的异养细菌和反硝化细菌.浮游细菌群落的α多样性在3个采样点间存在显著差异,而附生细菌群落的α多样性没有显著差异;整体来看,附生细菌群落的OTU指数与Shannon指数显著高于浮游细菌群落且二者存在明显的空间异质性.RDA分析表明DO、 IC、 TP、 NH⁺₄和TOC对浮游和附生细菌群落的结构变化均具有重要影响,但对浮游细菌群落的影响更大.共现性网络分析表明附生细菌群落有更多的生态位分化,网络更加稳定,对外界干扰的抵抗力也更强.FAPROTAX功能预测结果分析表明,附生细菌群落的氮循环特别是反硝化作用显著大于浮游细菌群落.研究结果揭示了浮游和...     

Effects of river sediment addition to the beach microbial communities

During the processes of claiming land from the sea, river sediments are used to fill and transform the sea area along the margin of islands and lands into new lands. These activities would probably affect microbial ecosystems of the beach sediment. However, little is known about these effects. In this study, a simulation test was conducted to evaluate these effects. Pyrosequencing technique was employed to assess the effects of river sediment addition to the beach bacterial communities. The used river sediments were collected from different rivers. The results indicated that river sediment addition greatly impacted microbial ecosystems of the beach and caused a clear shift in the beach bacterial community composition. These processes remarkably increased toxic metals and decreased the bacterial diversity in the beach sediment, mainly including the phyla of Bacteroidetes, Cyanobacteria, Proteobacteria, and Spirochaetes. River sediment addition caused an increase in potentially pathogenic bacterial genera of the beach sediment. Bacterial phylotype richness in the beach without river sediment addition was higher than that in the beach with river sediment input. There were significant differences in bacterial communities between beach sediments with and without river sediment addition, and the most dominant classes were Gammaproteobacteria and Flavobacteria.     

Improvement of the assimilable organic carbon (AOC) analytical method for reclaimed water

Microbial growth is an issue of concern that may cause hygienic and aesthetic problems during the transportation and usage of reclaimed water. Assimilable organic carbon (AOC) is an important parameter which determines the heterotrophic bacterial growth potential of water. Pseudomonas fluorescens P17 and Spirillum sp. NOX are widely used to measure AOC in drinking water. The AOC values of various reclaimed water samples determined by P17 and NOX were compared with those determined by the new strains isolated from reclaimed water in this study. It showed that the conventional test strains were not suitable for AOC measurement of reclaimed water in certain cases. In addition to P17 and NOX, Stenotrophomonas sp. ZJ2, Pseudomonas saponiphila G3 and Enterobacter sp. G6, were selected as test strains for AOC measurement of reclaimed water. Key aspects of the bioassay including inoculum cell density, incubation temperature, incubation time and the pH of samples were evaluated for the newly selected test strains. Higher inoculum density (10⁴ CFU·mL^-1) and higher incubation temperature (25°C) could reduce the time required for the tests. The AOC results of various collected samples showed the advantages of the method proposed based on those five strains in evaluating the biologic stability of reclaimed water.     

茄科雷尔氏菌蛋白质相互作用网络预测及分析

细菌性青枯病是由茄科雷尔氏菌(Ralstonia solanacearum)引起的一种世界范围的细菌性土传病害.该细菌基因组序列的完全测序,使得从蛋白质组角度来分析其蛋白质相互作用网络成为可能.本文通过朴素贝叶斯模型整合系统发生谱法、基因邻近法、基因融合法、操纵子法、同源映射法、微阵列法、域相互作用法等7种方法,并根据约豋指数确定的阙值,预测了可信的茄科雷尔氏菌的蛋白质相互作用网络.对网络中的分泌子网络和信号转导进行了分析,提出可能的药物作用靶点(cyaB、pilD、Fli、Rsp1526、VsrA、VsrB、PilH).对于未注释的蛋白依据蛋白相互作用推测了部分蛋白质的功能.本文也提供了完全免费的在线数据库支持,提供了方便的茄科雷尔氏菌的蛋白相互作用的查询及相互作用数据和推测的蛋白质功能数据的查询和下载(http://www.scbmp.org.cn/rsoppi.php).     

北江河水中抗生素抗性基因污染初步研究（Preliminary Studies on the Pollution Levels of Antibiotic Resistance Genes in the Water of Beijiang River, South China）

环境中细菌的耐药性,尤其是对抗生素的耐药性已成为影响生态环境的重要因素.论文采用抗生素抗性平板法调查了北江河水中四环素、红霉素及磺胺类这3类抗生素耐药性细菌的存在,采用定性PCR及荧光定量PCR方法分别研究了该水域sul1和sul2这2种磺胺类抗生素抗性基因(ARGs)的存在和含量水平.结果表明,所采集北江水域的9个样品中有5个对四环素有耐药性,7个对红霉素有耐药性,8个对磺胺二甲嘧啶有耐药性;定性PCR实验并经基因测序结果证实,5个样品含有sul1,4个样品含有sul2.进一步的PCR定量分析结果显示,7个样品中均检出sul1和sul2磺胺抗性基因,它们与内对照基因16S-rRNA表达量比值分别在10-2.56~10-0.52及10-3.25~10-1.24范围内,该结果显著高于美国科罗拉多州北部河流的研究结果.此外,数据分析也发现,sul1和sul2磺胺抗性基因的含量水平与该区域水中磺胺含量分布具有一定的相关性,表明外源性抗生素对河流的污染是诱导抗性基因的重要因素.     

Developed fungal–bacterial biofilms as a novel tool for bioremoval of hexavelant chromium from wastewater

Remediation measures for hexavalent chromium [Cr(VI)] are required for a safe environment. As a recent development in microbiology, bacterial biofilms are being studied as effective bioremediation agents. When bacteria are in fungal surface-attached biofilm mode, they are called fungal–bacterial biofilms (FBBs). They have not been tested for bioremediation so far. Hence, this study was conducted to develop FBBs and glass-wool-attached bacterial biofilms (BBs), and to evaluate Cr(VI) tolerability and removal of bacterial monocultures, BBs and FBBs. FBBs showed a significantly high level of Cr(VI) tolerance and resistance compared with its BBs or monocultures. After 10 days, up to 90% of Cr(VI) had been removed, which was significantly higher than that of BBs or its monocultures. Thus, it is clear that FBBs can be used as a novel tool to decontaminate Cr(VI) both in situ and ex situ.     

外加磷提高生物预处理效果的试验研究

利用国内研究较多的生物陶粒滤池预处理工艺,在我国北方某水库原水中添加微量的磷,考察磷对生物预处理的促进作用通过生物分析方法,发现在原水水样中添加50μg/L的PO₄^3--P(NaH₂PO₄)后,可以促进原水中细菌的生长,BDOC也有所增加,证明了原水中磷对细菌生长的限制因子作用陶粒滤池的实际运行结果表明,对于本试验所用原水,添加25μg/L的PO₄^3--P(H₃PO₄)后,生物陶粒滤池对水中CODMn的去除率平均提高4.7个百分点,UV254和TOC的去除率分别提高3.6和5.7个百分点.由此为提高生物预处理的运行效果提供了一个新的思路,也说明磷在饮用水中的作用需要引起重视.     

饮用水中磷与细菌再生长的关系

采用改进的可同化有机碳(AOC)和微生物可利用磷(MAP)方法,针对T市J水厂水源水、处理工艺以及一条配水干管中磷对细菌生长的限制作用进行了研究.结果表明:①水源水与处理工艺中MAP较高(5～38μg/L),配水管网中MAP较低(<5μg/L),且管网水中的MAP随着管线的延长基本保持不变.②常规处理工艺能够有效地去除水中的MAP(去除率为34.0%～83.7%).③在水源水和处理工艺中,水样的AOC_{potential<、sub>、AOCP与AOCnative没有显著差别,说明AOC是微生物生长繁殖的决定因素.该研究配水干管中,水样的AOCpotential、AOCP为AOCnative的2～8.7倍,磷成为细菌再生长的限制因子.}     

Isolation and characterization of gasoline-degrading bacteria from gas station leaking-contaminated soils

The effects of culture conditions in vitro and biosurfactant detection were studied on bacterial strains capable of degrading gasoline from contaminated soils near gas station. The main results were summarized as follows. Three bacteria （strains Q10, Q14 and Q18） that were considered as efficiently degrading strains were isolated and identified as Pseudomonas sp., Flavobaeterium sp. and Rhodococcus sp., respectively. The optimal growth conditions of three bacteria including pH, temperature and the concentration of gasoline were similar. The reduction in surface tension was observed with all the three bacteria, indicating the production of biosurfactant compounds. The value of surface tension reduced by the three strains Q10, Q14 and Q18 was 32.6 mN.m, 12.4 mN. m and 21.9 mN.m, respectively. Strain Q10 could be considered as a potential biosurfactant producer. Gasoline, diesel oil, benzene, toluene, ethylbenzene and xylene （BTEX） could easily be degraded by the three isolates. The consortium was more effective than the individual cultures in degrading added gasoline, diesel oil, and BTEX. These results indicate that these strains have great potential for in situ remediation of soils contaminated by gas station leaking.