Diversity of antibiotic resistance genes and encoding ribosomal protection proteins gene in livestock waste polluted environment

The rapid development and increase of antibiotic resistance are global phenomena resulting from the extensive use of antibiotics in human clinics and animal feeding operations. Antibiotics can promote the occurrence of antibiotic resistance genes (ARGs), which can be transferred horizontally to humans and animals through water and the food chain. In this study, the presence and abundance of ARGs in livestock waste was monitored by quantitative PCR. A diverse set of bacteria and tetracycline resistance genes encoding ribosomal protection proteins (RPPs) from three livestock farms and a river were analyzed through denaturing gradient gel electrophoresis (DGGE). The abundance of sul(I) was 10³ to 10⁵ orders of magnitude higher than that of sul(II). Among 11 tet-ARGs, the most abundant was tet(O). The results regarding bacterial diversity indicated that the presence of antibiotics might have an evident impact on bacterial diversity at every site, particularly at the investigated swine producer. The effect of livestock waste on the bacterial diversity of soil was stronger than that of water. Furthermore, a sequencing analysis showed that tet(M) exhibited two genotypes, while the other RPPs-encoding genes exhibited at least three genotypes. This study showed that various ARGs and RPPs-encoding genes are particularly widespread among livestock.     

Metabolic diversity of the heterotrophic microorganisms and potential link to pollution of the Rouge River

The heterotrophic microbial communities of the Rouge River were tracked using Biolog Ecoplates to understand the metabolic diversity at different temporal and spatial scales, and potential link to river pollution. Site less impacted by anthrophogenic sources (site 1), showed markedly lower metabolic diversity. The only substrates that were utilized in the water samples were carbohydrates. Sites more impacted by anthrophogenic sources (sites 8 and 9) showed higher metabolic diversity. Higher functional diversity was linked to the physico-chemical and biological properties of the water samples (i.e. higher concentrations of DO, DOC, chlorophyll, and bacterial density). Biolog analysis was found to be useful in differentiating metabolic diversity between microbial communities; in determining factors that most influence the separation of communities; and in identifying which substrates were most utilized by the communities. It can also be used as an effective ecological indicator of changes in river function attributable to urbanization and pollution.     

Post-flooding disaster crop diversity recovery: a case study of Cowpea in Mozambique

To restore food security to a traditional African cropping system following a sudden loss of seed, genetic diversity must be re-established. This study examines the extent to which Cowpea diversity was reinstated two years after a flood disaster in Gaza Province, Mozambique. The contribution that seed from various sources made to the recovery was assessed using semi-structured interviews and morphological and molecular data. Data suggest that diversity had recovered to some extent yet there was evidence of a narrowing of the genetic base, with fewer rare alleles and differences in the distribution of allele frequencies. Although the main channels for accessing seed after the flood were seed relief and markets, these sources contributed to minimal and different diversity. It appears that diversity was regained primarily through social networking in the form of loans or gifts of seed from friends and relatives. The results of the study are discussed in relation to seed relief approaches.     

Protected Area Safeguard Tree and Shrub Communities from Degradation and Invasion: A Case Study in Eastern Madagascar

Despite their prevalence in both developed and developing countries, there have been surprisingly few field assessments of the ecological effectiveness of protected areas. This study aimed to assess the effectiveness of a key protected area in eastern Madagascar, Ranomafana National Park (RNP). We established paired 100 × 4-m vegetation transects (400 m²) within RNP and in remnant forests in the park’s peripheral zone. In each 400-m² plot, all woody stems >1.5 cm in diameter at breast height were measured and identified to species. All species were also identified as native or non-native. We identified utilitarian species within all transects and they were sorted into use category. We calculated plot-level taxonomic biodiversity and functional diversity of utilitarian species; the latter was calculated by clustering the multivariate distances between species based on their utilitarian traits, and all metrics were tested using paired t-tests. Our results showed that there was significantly higher biodiversity inside RNP than in remnant forests and this pattern was consistent across all diversity metrics examined. Forests not located within the park’s boundary had significantly higher non-native species than within RNP. There was no statistically significant difference in functional diversity of utilitarian species inside RNP vs. remnant forests; however, the overall trend was toward higher diversity inside park boundaries. These findings suggested that RNP has been effective at maintaining taxonomic diversity relative to surrounding unprotected areas and restricting the spread of non-native plants. The results also suggested that low functional redundancy of forests outside of RNP might be of concern, because residents in surrounding villages may have few other substitutes for the services provided by species that are of critical importance to their livelihoods. This study highlights the challenges of trying to reconcile biodiversity conservation with human use of natural resources in economically poor, remote areas.     

培养藻类制取生物能源的研究

能源紧张和环境污染是全世界所面临的共同问题,用藻类替代传统作物生产生物能源是生物质能的重要发展方向之一。文章介绍了国内外对藻类培养条件、光生物反应器型式、藻类基因工程、藻细胞收集方法以及能源藻类生产系统的研究成果。研究认为,以藻类为原料生产生物燃料具有良好的发展前景,并指出了今后能源藻类生长的重点研究方向。     

中国FDI环境效应的再检验

改革开放以来,外商直接投资(FDI)的涌入为中国经济发展注入了新活力,并成为中国经济高速增长的重要引擎之一。然而,随着康菲石油渤海漏油事故、江苏启东王子造纸排污和阿玛尼污染投诉等涉外污染事件报道频出,学术界对于FDI涌入可能带来的负面环境效应表现出一定担忧。现有文献多聚焦于整体层面的FDI环境效应检验,而对其区域差异及原因产生机制的系统探究并不多见。为此,本文从理论判断和命题推演出发,利用2003—2014年中国省际面板数据,以改进熵值法拟合环境污染综合指数,并构建普通面板模型,实证检验了FDI流入对中国环境污染的影响及其区域差异。结果表明,总体而言,"污染光环"假说在中国基本成立,即FDI流入在一定程度上改善了中国环境质量,但不同地区FDI的环境效应有所不同,其主要表现为沿海和内陆地区FDI具有显著的"污染光环"效应,且前者强于后者,而沿边地区FDI具有不明显的"污染天堂"效应。在此基础上,构造面板门槛模型,进一步系统考察了FDI对中国环境污染影响的4种主要吸收能力因素的门槛效应。门槛回归结果表明,FDI对中国环境污染的影响显著存在基于经济发展、环境规制、人力资本和金融发展水平的双门槛效应。经济发展、人力资本和金融发展水平越高,FDI的"污染光环"效应越明显,而适度的环境规制才更有利于FDI环境技术溢出的发挥。基于此,本文建议应进一步全方位地提高对外开放水平,一如既往地积极引进并监督FDI;同时地方政府也需认清地区发展的不平衡性,进而采取差异化的引资政策。     

Bacterial diversity in paclobutrazol applied agricultural soils

The aim of this study was to investigate the bacterial communities on paclobutrazol [(2RS, 3RS)-1-(4-Chlorophenyl)-4, 4-dimethyl-2-(1H-1,2,4-triazol-1-yl) pentan-3-ol]–applied agricultural soils by denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction (PCR) amplified 16S rDNA gene fragments. Three different agricultural soil samples were collected from paclobutrazol applied mango and waxapple orchards, peanut fields and untreated rice fields as a control for DGGE analysis. The DGGE pattern of PCR- generated 16S rDNA gene fragments indicated that the bacterial populations from four paclobutrazol–applied soils of peanut fields were closely related to each other and two paclobutrazol–applied soils of mango and waxapple orchards harbored closely related bacterial communities. But, paclobutrazol–free agricultural soils comprised relatively a different bacterial group. However, the bacterial populations of mango and waxapple orchard are completely different from the bacterial communities of peanut field. Further purification and sequence analysis of 40 DGGE bands followed by phylogenetic tree assay showed similar results that soil bacteria from paclobutrazol applied mango and waxapple orchard are phylogenetically related. Based on the phylogenetic analysis, the clone M-4 was clad 100 % (bootstrap value) with Mycobacterium sp. The Mycobacterium sp. has been proved to degrade the phenolic compounds such as phenol, 4-chlorphenol, 2,4-dichlorophenol and paclobutrazol molecule containing chlorobenzene ring.     

响应面法和神经网络优化Acinetobacter sp. DNS32发酵基质

为了提高阿特拉津降解菌Acinetobacter sp.DNS32的产量,分别采用响应曲面法和基于人工神经网络的遗传算法对阿特拉津降解菌DNS32发酵培养基中3个重要基质成分(玉米粉、豆饼粉、K2HPO4)进行优化研究。响应曲面法确定3种成分的含量为玉米粉39.494 g/L,豆饼粉25.638 g/L和K2HPO43.265 g/L时,预测发酵活菌最大生物量为7.079×108CFU/mL,实测量为7.194×108CFU/mL;人工神经网络结合遗传算法优化确定3种主要成分含量为玉米粉为39.650 g/L,豆饼粉为25.500 g/L,K2HPO4为2.624 g/L时,预测最大值为7.199×108CFU/mL,实测量为7.244×108CFU/mL;最终确定培养基配方:玉米粉为39.650 g/L,豆饼粉为25.500 g/L,K2HPO4为2.624 g/L,CaCO3为3.000 g/L,MgSO4.7H2O和NaCl均为0.200 g/L;优化后阿特拉津降解菌DNS32发酵生物量比优化前提高了36.6%。结果表明,在阿特拉津降解菌DNS32发酵培养基组分优化方面,响应面法和基于人工神经网络的遗传算法都是可行的,基于人工神经网络的遗传算法具有更好的拟合度和预测准确度。     

遗传投影寻踪回归在城市环境质量评价中的应用

引入投影降维的思想,将遗传投影寻踪与回归分析技术运用到城市环境质量评价中。将此技术与神经网络方法进行实例比较,投影寻踪回归方法不但可以合理地作出环境质量的综合评价,而且消除了神经网络方法中类别判断不够精确的影响。     

煤炭产业国际竞争力的遗传—投影寻踪评价

根据煤炭产业发展的实际状况,提出了煤炭产业竞争力评价的指标体系。采用探索性数据分析—投影寻踪法,结合遗传算法,建立了遗传—投影寻踪综合评价模型。以全球11个主要产煤国为对象进行了实证研究,验证了该方法的科学性和实践的可行性,提出提升我国煤炭产业竞争力的对策建议。