Sensitivity analysis of the two dimensional application of the Generic Ecological Model (GEM) to algal bloom prediction in the North Sea

Harmful algae can cause damage to co-existing organisms, tourism and farmers. Accurate predictions of algal future composition and abundance as well as when and where algal blooms may occur could help early warning and mitigating. The Generic Ecological Model is an instrument that can be applied to any water system (fresh, transitional or coastal) to calculate the primary production, chlorophyll-a concentration and phytoplankton species composition. It consists of physical, chemical and ecological model components which are coupled together to build one generic and flexible modelling tool. In this paper the model has been analyzed to assess sensitivity of the simulated chlorophyll-a concentration to a subset of ecologically significant input factors. Only a small number of approaches could be considered as suitable for several reasons including the model complexity, engagement of numerous interacting parameters and relatively long time of a single simulation. Thus, sensitivity analysis has been carried out with the use of the Morris method and later enriched by the computation of the correlation ratios of the selected parameters on the model response at more than a few locations in the modelled area. The obtained results are in agreement with expert knowledge of the ecological processes in the North Sea and correspond well with local characteristics.     

A stage-structured, Aedes albopictus population model

Aedes albopictus has been the fastest spreading invasive animal species in the world from the mid-1980s until the mid-2000s. In areas it infests, it disrupts native mosquito ecology and can potentially vector up to 21 viruses. To better understand the population dynamics of this species, we created a temperature dependent population model. A stage-structured model was chosen to allow each life-stage to have different temperature dependent mortality and development rates, and each stage was modeled with an ordinary differential equation. Model parameters and distributions were based upon literature values. Initially, a basic model was constructed. This model then had parameters that were forced based upon daily average temperatures. Several criteria were used to evaluate the model, including a comparison to field data from Lubbock, TX. In a stochastic version of the model, a 95% confidence limit contained 70.7% of the field data points. Based upon these results, we feel reasonably confident that we have captured the role of temperature in driving the population dynamics of Ae. albopictus.     

Effects of temperature variation on TSD in turtle (C. picta) populations

We formulate a two-sex model of temperature-dependent sex determination (TSD) for a freshwater turtle (C. picta) population. The aim is to understand how environmental temperature variations and nest heat conduction properties affect the long term dynamics of the population. This is a key to understanding how global temperature changes may affect their survival. With stochastic inputs of ambient temperature and solar radiation, the model uses the heat equation to determine the temperature in the egg layer in the nest; in turn, this determines the sex ratio in the egg clutch using a variable degree-day model. Finally, a nonlinear Leslie type, stage-based, two-sex model, is used to determine the long term male and female populations. A two-sex model is required because of different development rates for males and females. The model is flexible enough to enable other researchers to examine the effects of temperature variation variations on other species with TSD, e.g., crocodilians, reptilians, as well as other turtle species. It can be adapted to study effects of nest location, soil type, rain events, different incubation periods, and density effects, for example, the dependence of the mating function on the ratio of males to females and each’s contribution to the sex of hatchlings. Modifications can be easily made to fit a specific life history traits. The model is a beginning step in understanding the long term, high fitness shown by many reptile species with TSD, and it may suggest to experimentalists what data may be relevant to these issues; it can also be useful to wildlife managers in developing strategies for intervention if needed. Among the principal findings are that temperature variability and detailed nest heat conduction properties may buffer projected negative effects on a population.     

Beyond identity crisis: The challenge of recontextualizing ecosystem delimitation

In a series of papers, three important system ecologists, Bernard C. Patten, Sven E. Jorgensen and Milan Straškraba attempt to revise the old ecosystem field and construct a new systems ecology. Inevitably, their attempt is faced with some of the same problems that led the field to decline. The indefiniteness of ecosystem boundaries is one of them, maybe the most important. Systems’ ecology failure to define ecosystem boundaries was considered a significant obstacle for the conceptualization of the ecosystem as a valid organizing unit of nature and resulted in a disciplinary identity crisis. To surmount this crisis, the authors introduce into the field innovative ideas which have their origin in the so-called postmodern network theories. These ideas reinforce the concept of environment and allow for a relative conception of space, which might have beneficial effects in delimiting ecosystems. However, the problem-solving potential of these ideas is not activated because the authors remain stitched to the Odumian mode of ecosystem thinking and avoid recontextualizing the old building blocks.     

Experimental Test of Postfire Management in Pine Forests: Impact of Salvage Logging versus Partial Cutting and Nonintervention on Bird–Species Assemblages

Abstract: There is an intense debate about the effects of postfire salvage logging versus nonintervention policies on regeneration of forest communities, but scant information from experimental studies is available. We manipulated a burned forest area on a Mediterranean mountain to experimentally analyze the effect of salvage logging on bird–species abundance, diversity, and assemblage composition. We used a randomized block design with three plots of approximately 25 ha each, established along an elevational gradient in a recently burned area in Sierra Nevada Natural and National Park (southeastern Spain). Three replicates of three treatments differing in postfire burned wood management were established per plot: salvage logging, nonintervention, and an intermediate degree of intervention (felling and lopping most of the trees but leaving all the biomass). Starting 1 year after the fire, we used point sampling to monitor bird abundance in each treatment for 2 consecutive years during the breeding and winter seasons (720 censuses total). Postfire burned‐wood management altered species assemblages. Salvage logged areas had species typical of open‐ and early‐successional habitats. Bird species that inhabit forests were still present in the unsalvaged treatments even though trees were burned, but were almost absent in salvage‐logged areas. Indeed, the main dispersers of mid‐ and late‐successional shrubs and trees, such as thrushes (Turdus spp.) and the European Jay (Garrulus glandarius) were almost restricted to unsalvaged treatments. Salvage logging might thus hamper the natural regeneration of the forest through its impact on assemblages of bird species. Moreover, salvage logging reduced species abundance by 50% and richness by 40%, approximately. The highest diversity at the landscape level (gamma diversity) resulted from a combination of all treatments. Salvage logging may be positive for bird conservation if combined in a mosaic with other, less‐aggressive postfire management, but stand‐wide management with harvest operations has undesirable conservation effects.     

Defining Historical Baselines for Conservation: Ecological Changes Since European Settlement on Vancouver Island,Canada

Abstract: Conservation and restoration goals are often defined by historical baseline conditions that occurred prior to a particular period of human disturbance, such as European settlement in North America. Nevertheless, if ecosystems were heavily influenced by native peoples prior to European settlement, conservation efforts may require active management rather than simple removal of or reductions in recent forms of disturbance. We used pre‐European settlement land survey records (1859–1874) and contemporary vegetation surveys to assess changes over the past 150 years in tree species and habitat composition, forest density, and tree size structure on southern Vancouver Island and Saltspring Island, British Columbia, Canada. Several lines of evidence support the hypothesis that frequent historical burning by native peoples, and subsequent fire suppression, have played dominant roles in shaping this landscape. First, the relative frequency of fire‐sensitive species (e.g., cedar [Thuja plicata]) has increased, whereas fire‐tolerant species (e.g., Douglas‐fir [Pseudotsuga menziesii]) have decreased. Tree density has increased 2‐fold, and the proportion of the landscape in forest has greatly increased at the expense of open habitats (plains, savannas), which today contain most of the region's threatened species. Finally, the frequency distribution of tree size has shifted from unimodal to monotonically decreasing, which suggests removal of an important barrier to tree recruitment. In addition, although most of the open habitats are associated with Garry oak (Quercus garryana) at present, most of the open habitats prior to European settlement were associated with Douglas‐fir, which suggests that the current focus on Garry oak as a flagship for the many rare species in savannas may be misguided. Overall, our results indicate that the maintenance and restoration of open habitats will require active management and that historical records can provide critical guidance to such efforts.     

铜陵新桥矿区土壤中耐Cu微生物的筛选研究

选择安徽铜陵新桥矿区富Cu的污染土壤,充分利用微生物受自然环境重金属胁迫而产生耐性这一特点,进行土壤中耐Cu微生物的筛选研究。实验过程中分别配制三种不同的培养基,细菌、真菌和放线菌培养基。在水浴恒温振荡器中对土壤中耐受重金属的微生物进行驯化,将得到的对Cu2+耐受性最高的液体培养基作为菌源,在琼脂平板培养基上进行划线分离,并将得到的纯菌株在光学显微镜下进行形态观察,菌种经试管斜面富集培养后保存在4℃冰箱中以便后续使用。研究发现,土样中细菌和真菌对Cu的耐受性低,最高耐受质量浓度分别只达到500mg·L-1和1100mg·L-1。而放线菌表现出Cu高耐受性,分离得到的放线菌耐受Cu的质量浓度最高达到10000mg·L-1,初步鉴定该放线菌株为链霉菌属。该放线菌菌种可能同时对Cu有吸附降解特性,具有成为污染土壤生物治理的高效耐受吸附菌种的潜力巨大。     

基于SCI发文的中国生态学研究态势文献计量分析

采用文献计量学的方法,基于《科学引文索引》数据库近十年的检索结果,定量分析中国生态学领域发文的主题、时间、作者、机构、合作国家、被引频次、期刊分布等数据,系统分析中国生态学领域近十年的研究发展态势、研究热点、研究投入主体、国际合作和研究水平等趋势和特征。基于检索得到的3316篇SCI论文数据,研究认为：我国生态学领域的研究发展迅速。研究的热点主要是分子标记、气候变化、生物多样性、土地利用、分类学、物种、草原、荒漠化、模型、多态性等方面。研究主题的关联性随时间有增加的趋势。588个第一作者发文机构中,中国科学院发文量最高,大学近年的研究发展迅猛。生态学领域篇均作者人数是2.2人。国际合作的主要国家是美国。我国生态学研究的SCI发文篇均被引频次为6。第一作者机构为中国机构的论文被引用情况逊于外国机构。中国生态学领域研究最重要的发文期刊是ECOLOGICAL MODELLING和JOURNAL OF ARID ENVIRONMENTS。     

Reduced effect of Tasmanian devil facial tumor disease at the disease front

Pathogen-driven declines in animal populations are increasingly regarded as a major conservation issue. The Tasmanian devil (Sarcophilus harrisii) is threatened with extinction by devil facial tumor disease, a unique transmissible cancer. The disease is transmitted through direct transfer of tumor cells, which is possible because the genetic diversity of Tasmanian devils is low, particularly in the major histocompatibility complex genes of the immune system. The far northwest of Tasmania now holds the last remaining disease-free wild devil populations. The recent discovery of unique major histocompatibility complex genotypes in the northwestern region of Tasmania has raised the possibility that some animals may be resilient to the disease. We examined the differences in the epidemiology and population effects of devil facial tumor disease at 3 well-studied affected sites in eastern Tasmania and 1 in western Tasmania (West Pencil Pine). In contrast to the 3 eastern sites, there has been no rapid increase in disease prevalence or evidence of population decline at West Pencil Pine. Moreover, this is the only onsite at which the population age structure has remained unaltered 4 years after the first detection of disease. The most plausible explanations for the substantial differences in population effects and epidemiology of the disease between eastern and western sites are geographic differences in genotypes or phenotypes of devils and functional differences between tumor strains in the 2 regions. We suggest that conservation efforts focus on identifying whether either or both these explanations are correct and then, if resistance alleles exist, to attempt to spread the resistant alleles into affected populations. Such assisted selection has rarely been attempted for the management of wildlife diseases, but it may be widely applicable.     

Effects of Native and Non‐Native Vertebrate Mutualists on Plants

Abstract: Extinctions can leave species without mutualist partners and thus potentially reduce their fitness. In cases where non‐native species function as mutualists, mutualism disruption associated with species’ extinction may be mitigated. To assess the effectiveness of mutualist species with different origins, we conducted a meta‐analysis in which we compared the effectiveness of pollination and seed‐dispersal functions of native and non‐native vertebrates. We used data from 40 studies in which a total of 34 non‐native vertebrate mutualists in 20 geographic locations were examined. For each plant species, opportunistic non‐native vertebrate pollinators were generally less effective mutualists than native pollinators. When native mutualists had been extirpated, however, plant seed set and seedling performance appeared elevated in the presence of non‐native mutualists, although non‐native mutualists had a negative overall effect on seed germination. These results suggest native mutualists may not be easily replaced. In some systems researchers propose taxon substitution or the deliberate introduction of non‐native vertebrate mutualists to reestablish mutualist functions such as pollination and seed dispersal and to rescue native species from extinction. Our results also suggest that in places where all native mutualists are extinct, careful taxon substitution may benefit native plants at some life stages.