Statistical inference on patch-specific survival and movement rates from marked animals

Empirical estimates of patch-specific survival and movement rates are needed to parametrize spatially explicit population models, and for inference on the effects of habitat quality and fragmentation on populations. Data from radio-marked animals, in which both the fates and habitat locations of animals are known over time, can be used in conjunction with continuous-time proportional hazards models to obtain inferences on survival rates. Discrete-time conditional logistic models may provide inference on both survival and movement rates. We use Monte Carlo simulation to investigate accuracy of estimates of survival from both approaches, and movement rates from conditional logistic regression, for two habitats. Bias was low (relative bias < 0.04) and interval coverage accurate (close to the nominal 0.95) for estimates of habitat effect on survival based on proportional hazards. Bias was high ( relative bias 0.60) and interval coverage poor ( = 0.26 vs. nominal 0.95) for estimates of habitat effect based on conditional logistic regression; bias was especially influenced by heterogeneity in survival and the shape of the hazard function, whereas both bias and coverage were affected by ‘memory’ effects in movement patterns. Bias estimates of movement rate was low ( relative bias < 0.05), but interval coverage was poor ( = 0.48–0.80), possibly as a result of poor performance of a Taylor series estimate of variance. An example is provided from a radio-telemetry study of 47 wintering American woodcock (Scolopax minor), illustrating practical difficulties in field studies to parametrize these models. We also discuss extensions of continuous-time models to explicitly include a movement process, and further examine tradeoffs between continuous and discrete models.     

珍稀濒危植物金花茶地理分布与生境调查研究

为了对珍稀濒危植物金花茶(Camellia nitidissima)进行有效保护,通过实地调查和相关资料分析,对其地理分布与生境进行了系统的调查研究。调查结果表明:(1)金花茶主要分布在广西西南部的防城、南宁、隆安、扶绥等县(市)。位于北纬21°30′～22°55′,东经107°36′～108°33′区域内。金花茶的垂直分布高度在12～450m之间,以海拔200～300m之间的范围较为常见。(2)金花茶为喜暖热植物,对热量要求较高,属热带性树种。金花茶不能忍耐阳光直射,为喜荫耐荫植物,要求的光合有效辐射一般小于photons12.8μmol?m-2?s-1。(3)金花茶群落植物组成种类多样,且多属热带性树种。组成群落主要科有橄榄科(Burseraceae)、山榄科(Sapotaceae)、大戟科(Euphorbiaceae)、桑科(Moraceae)、藤黄科(Guttiferae)、无患子科(Sapindaceae)、番荔枝科(Annonaceae)、梧桐科(Sterculiaceae)的种类。研究结果摸清了金花茶的地理分布和主要生态特性,为金花茶的引种驯化和种质资源的保存提供科学依据。     

Effects of Climate and Land-Use Change on Species Abundance in a Central European Bird Community

Abstract:  Although it is known that changes in land use and climate have an impact on ecological communities, it is unclear which of these factors is currently most important. We sought to determine the influence of land-use and climate alteration on changes in the abundance of Central European birds. We examined the impact of these factors by contrasting abundance changes of birds of different breeding habitat, latitudinal distribution, and migratory behavior. We examined data from the semiquantitative Breeding Bird Atlas of Lake Constance, which borders Germany, Switzerland, and Austria. Changes in the regional abundance of the 159 coexisting bird species from 1980–1981 to 2000–2002 were influenced by all three factors. Farmland birds, species with northerly ranges, and long-distance migrants declined, and wetland birds and species with southerly ranges increased in abundance. A separate analysis of the two decades between 1980–1981 and 1990–1992 and between 1990–1992 and 2000–2002 showed that the impact of climate change increased significantly over time. Latitudinal distribution was not significant in the first decade and became the most significant predictor of abundance changes in the second decade. Although the spatial scale and temporal resolution of our study is limited, this is the first study that suggests that climate change has overtaken land-use modification in determining population trends of Central European birds.     

Roads and Landscape Pattern in Northern Wisconsin Based on a Comparison of Four Road Data Sources

Abstract:  Roads are important components of landscapes; they fragment habitat, facilitate invasive species spread, alter hydrology, and influence patterns of land use. Previous research on the ecological impacts of roads may have underestimated their effect because currently available sources of road data do not include the full road network. We compared differences in road density and landscape pattern among U.S. Census Bureau TIGER line files, U.S. Geological Survey 1:100,000-scale digital line graphs, and U.S. Geological Survey 1:24,000-scale digital raster graphics in northern Wisconsin to road data derived from 1:40,000-scale digital orthophotos. Road density measured from digital orthophotos (2.82 km/km²) was significantly greater than that of digital raster graphics (1.62 km/km²) and more than double that of digital line graphs (1.21 km/km²) and TIGER (1.27 km/km²) data. The increased road densities in raster graphics and orthophoto data were mainly due to the addition of minor roads. When all roads were used to define patch boundaries, landscape metrics produced with orthophoto data showed significantly greater levels of fragmentation than those based on line or raster graphics. For example, maximum patch size was 1074 ha and total edge was 109 km for line graphs, compared with 686 ha and 211 km for orthophoto data. Roads are missing in commonly used data, primarily because mapping standards systematically exclude minor roads. These standards are not ecologically based and may result in false assumptions about the ecological effects of roads. We recommend that future studies take special consideration of the completeness of road data and consider whether all ecologically relevant roads are included.     

Reproductive Investment of a Lacertid Lizard in Fragmented Habitat

Abstract:  We studied the effect of habitat fragmentation on female reproductive investment in a widespread lacertid lizard (  Psammodromus algirus ) in a mixed-forest archipelago of deciduous and evergreen oak woods in northern Spain. We captured gravid females in fragments (≤10 ha) and forests (≥ 200 ha) and brought them to the laboratory, where they laid their eggs. We incubated the eggs and released the first cohort of juveniles into the wild to monitor their survival. Females from fragments produced a smaller clutch mass and laid fewer eggs (relative to mean egg mass) than females of similar body size from forests. Lizards did not trade larger clutches for larger offspring, however, because females from fragments did not lay larger eggs (relative to their number) than females from forests. Among the first cohort of juveniles, larger egg mass and body size increased the probability of recapture the next year. Thus, fragmentation decreased the relative fecundity of lizards without increasing the quality of their offspring. Reduced energy availability, increased predation risk, and demographic stochasticity could decrease the fitness of lizards in fragmented habitats, which could contribute to the regional scarcity of this species in agricultural areas sprinkled with small patches of otherwise suitable forest. Our results show that predictable reduction of reproductive output with decreasing size of habitat patches can be added to the already known processes that cause inverse density dependence at low population numbers.     

Phytotoxicity and groundwater impacts of leaching from thermal treatment residues in roadways

The use of coal fly ash (CFA), municipal solid waste incinerator bottom ash (MSWIBA) and flue gas desulfurization residue (FGDR) in road construction has become very common owing to its economical advantages. However, these residues may contain toxic constituents that pose an environmental risk if they leach out and flow through the soil, surface water and groundwater. Therefore, it is necessary to assess the ecotoxicity and groundwater impact of these residues before decisions can be made regarding their utilization for road construction. In this study, the physico-chemical characteristics, leaching and phytotoxicity of these residues were investigated. Specifically, multivariate analyses were used to evaluate the contributions of the leaching constituents of the CFA, MSWIBA and FGDR leachates to the germination index of wheat seeds. B, Ba, Cr, Cu, Fe and Pb were found to be more toxic to the wheat seeds than the other heavy metals. Furthermore, the leached concentrations of the constituents from the CFA, MSWIBA and FGDR were below the regulatory threshold limits of the Chinese identification standard for hazardous wastes. Analyses conducted using a numerical groundwater model (WiscLEACH) indicated that the predicted field concentrations of metals from the CFA, MSWIBA and FGDR increased with time up to about 30 years at the point of compliance, then decreased with time and distance. Overall, this study demonstrated that the risks resulting from MSWIBA, CFA and FGDR leaching could be assessed before its utilization for road construction, providing crucial information for the adoption of these alternative materials.     

Biological Connectivity of Seasonally Ponded Wetlands across Spatial and Temporal Scales

Many species that inhabit seasonally ponded wetlands also rely on surrounding upland habitats and nearby aquatic ecosystems for resources to support life stages and to maintain viable populations. Understanding biological connectivity among these habitats is critical to ensure that landscapes are protected at appropriate scales to conserve species and ecosystem function. Biological connectivity occurs across a range of spatial and temporal scales. For example, at annual time scales many organisms move between seasonal wetlands and adjacent terrestrial habitats as they undergo life‐stage transitions; at generational time scales, individuals may disperse among nearby wetlands; and at multigenerational scales, there can be gene flow across large portions of a species’ range. The scale of biological connectivity may also vary among species. Larger bodied or more vagile species can connect a matrix of seasonally ponded wetlands, streams, lakes, and surrounding terrestrial habitats on a seasonal or annual basis. Measuring biological connectivity at different spatial and temporal scales remains a challenge. Here we review environmental and biological factors that drive biological connectivity, discuss implications of biological connectivity for animal populations and ecosystem processes, and provide examples illustrating the range of spatial and temporal scales across which biological connectivity occurs in seasonal wetlands.     

太子河流域硅藻群落与驱动因子的定量关系

定量研究水生生物对水环境参数的适宜值是评估栖息地质量和维持生物完整性的主要途径. 以辽宁省太子河流域为研究范例,选择Y(优势度指数)大于0.000 1的硅藻为研究对象,结合水环境参数,采用CCA(典范对应分析)、CART(分类回归树)和WA(加权平均回归分析)等方法,分析硅藻与水环境因子的关系,并计算硅藻对驱动因子的最适值. CCA结果表明,IOS(底质指数)、ρ(TDS)(TDS为总溶解固体)和ρ(COD_Mn)是硅藻群落的驱动因子;CART预测结果表明,IOS高的水环境硅藻密度高于IOS低的水环境,ρ(TDS)和ρ(COD_Mn)低的水环境硅藻密度高于ρ(TDS)和ρ(COD_Mn)高的水环境;WA结果显示,96种硅藻对IOS、ρ(TDS)和ρ(COD_Mn)的最适值范围分别为1.00~6.44、60.29~820.30 mg/L和0.46~2.89 mg/L. 钝端菱形藻解剖刀变种和尖端菱形藻适宜栖息于IOS较低而ρ(COD_Mn)较高的水环境, Gomphonema trancatum和肿大桥弯藻则适宜栖息于IOS较高的水环境;缠结异极藻二叉变种和尖细异极藻适宜栖息于ρ(TDS)较高的水环境,弧形峨眉藻和克洛钝脆杆藻则适宜栖息于ρ(TDS)较低的水环境;弧形峨眉藻和隐头舟形藻威蓝变种适宜栖息于ρ(COD_Mn)较低的水环境. 针杆藻和桥弯藻对IOS的最适值高于舟形藻和菱形藻以及其他藻种,96种硅藻对ρ(TDS)和ρ(COD_Mn)的最适值均表现为菱形藻和异极藻较高、针杆藻和桥弯藻较低.