Diversity of methanotrophs in Zoige wetland soils under both anaerobic and aerobic conditions

Zoige wetland is one of the most important methane emission centers in China. The oxidation of methane in the wetland a ects global warming, soil ecology and atmospheric chemistry. Despite their global significance, microorganisms that consume methane in Zoige wetland remain poorly characterized. In this study, we investigated methanotrophs diversity in soil samples from both anaerobic site and aerobic site in Zoige wetland using pmoA gene as a molecular marker. The cloning library was constructed according to the pmoA sequences detected. Four clusters of methanotrophs were detected. The phylogenetic tree showed that all four clusters detected were a liated to type I methanotrophs. Two novel clusters (cluster 1, cluster 2) were found to relate to none of the recognized genera of methanotrophs. These clusters have no cultured representatives and reveal an ecological adaptation of particular uncultured methanotrophs in Zoige wetland. Two clusters were belonging to Methylobacter and Methylococcus separately. Denaturing gradient gel electrophoresis gel bands pattern retrieved from these two samples revealed that the community compositions of anaerobic soil and aerobic soil were di erent from each other while anaerobic soil showed a higher metanotrophs diversity. Real-time PCR assays of the two samples demonstrated that aerobic soil sample in Zoige wetland was 1.5 times as much copy numbers as anaerobic soil. These data illustrated that methanotrophs are a group of microorganisms influence the methane consumption in Zoige wetland.     

MBR和CAS工艺污泥在贫营养培养条件下的微生物群落结构研究

采用聚合酶链式-变性梯度凝胶电泳（PCR-DGGE）技术,研究了膜生物反应器（MBR）和传统活性污泥工艺（CAS）反应器中微生物在贫营养条件下的总细菌群落结构.结果表明,在培养过程中,污泥的微生物种群经历了一个比较明显的变化过程,且以CAS污泥微生物种群的变化更为明显,演替过程中既有原始优势种群的消亡,又有新的优势种群...     

Glutathione S-transferase gene polymorphism,cigarette smoking and DNA damage

Several factors such as smoking habits, diet, occupational, and environmental exposure to chemical carcinogens influence the overall level of DNA damage. In 69 healthy adult volunteers’ polymorphisms of glutathione S-transferase (GST), an enzyme which participates in the metabolism of a broad range of carcinogens and endogenous compounds were determined. The level of DNA damage was assessed by comet assay and classified according to GSTT1/M1 genotype and smoking habits. GSTM1 null genotype was recognized in 48% of studied subjects and GSTT1 null genotype in only two cases (3%). In subjects carrying GSTT1/M1 alleles a significantly lower degree of DNA damage, determined as % DNA in the comet's tail, than in null individuals was noted. However, the results obtained did not indicate that in studied subjects an elevated endogenous level of DNA damage may be significantly related to smoking habits.     

生物样品体外致突变高通量检测方法研究进展

评述了几种常用的体外致突变检测方法及其用于生物样品检测的可行性,有些方法经改进可用于高通量检测生物样品体外致突变性.经典Ames实验受生物样品中组氨酸的影响,易产生假阳性结果,尽管经过修正可以排除组氨酸的干扰,但操作繁琐,不适合高通量检测.基于SOS反应的检测体系避开了组氨酸的影响,且简单易行,适合高通量检测:以β-半乳糖苷酶基因(lacZ)作为报告基因的检测体系灵敏度高,且经过离心洗涤或后培养的方式可降低样品颜色的影响;以绿色荧光蛋白(GFP)基因作为报告基因的检测体系避开了颜色的干扰,但这类方法灵敏度普遍不高,可以寻找信号更强的荧光蛋白以替代GFP;荧光素酶(lux)基因集lacZ和GFP的优点于一身,但检测时需要额外添加辅助因子,限制了其应用.也对单细胞凝胶电泳、tk基因突变实验、染色体损伤检测等方法进行了分析,有些适合生物样品高通量检测,但由于缺少国际通用的标准,很难推广使用.     

Application of proteomics in environmental science

Proteomics involves the separation of proteins, identification of the amino acid sequence of the interested or target proteins, study of the function of the proteins, modification, structure and ultimate assignments to functional pathways in the cell. The proteomic investigations have contributed greatly to human diseases studies, new drugs discovery researches, and environmental science in recent years. This article provides a review on the development of the main proteomic technologies, including both the gel based and non-gel based technologies, and their applications in environmental science. Proteomic technologies have been utilized in the environmental stresses studies to analyze the induction or reduction of proteins at expression level and identify the target proteins to investigate their function in response to environmental stresses, such as high or low pH, oxidation stress, and toxic chemicals. Such protein responses are also helpful to understand the mechanisms of some cellular activities and the functions of some proteins.     

Metagenomic assessment of the microbial diversity in ground pork products from markets in the North Central Region of South Korea

The purpose of this study was to characterize the microbial community in ground pork using molecular approaches. Forty six ground pork products were purchased from local stores in the north central area of South Korea. Aerobic plate counts varied 4.23 ± 5.14 × 10⁵ CFU/g with the range between 5.00 × 10³ and 1.85 × 10⁶ CFU/g for ground pork samples. Four ground meat samples were further processed for metagenomic analysis. Pseudomonas species was the most relative abundant with a wide range occurring (1.72 to 77.7%) as part of the microbial genera in ground pork. Bacteria such as Carnobacterium, Yersinia, Photobacterium were also identified in ground pork. Despite the prominence of certain genera across all samples there was still extensive microbial diversity among ground pork products that originated from different slaughter houses and were processed in different markets. Such diversity indicates that designing interventions to extend shelf life may be hampered by the extensive variability in the microbial consortia associated with pork products. However, this diversity may be useful for developing microbial traceability signatures unique to a slaughter house or a particular market.     

Control factors of partial nitritation for landfill leachate treatment

Anaerobic ammonium oxidation (ANAMMOX) technology has potential technical superiority and economical efficiency for the nitrogen removal from landfill leachate, which contains high-strength ammonium nitrogen (NH4 -N) and refractory organics. To complete the ANAMMOX process, a preceding partial nitritation step to produce the appropriate ratio of nitrite/ammonium is a key stage. The objective of this study was to determine the optimal conditions to acquire constant partial nitritation for landfill leachate treatment, and a bench scale fixed bed bio-film reactor was used in this study to investigate the effects of the running factors on the partial nitritation. The results showed that both the dissolved oxygen (DO) concentration and the ammonium volumetric loading rate (Nv) had effects on the partial nitritation. In the controlling conditions with a temperature of 30±1℃, Nv of 0.2-1.0 kg NH4 -N/(m3d), and DO concentration of 0.8-2.3 mg/L, the steady partial nitritation was achieved as follows: more than 94% partial nitritation efficiency (nitrite as the main product), 60%-74% NH4 -N removal efficiency, and NO2--N/NH4 -N ratio (concentration ratio) of 1.0-1.4 in the effluent. The impact of temperature was related to iVv at certain DO concentration, and the temperature range of 25-30癈 was suitable for treating high strength ammonium leachate. Ammonium-oxidizing bacteria could be acclimated to higher FA (free ammonium) in the range of 122-224 mg/L. According to the denaturing gradient gel electrophoresis analysis result of the bio-film in the reactor, there were 25 kinds of 16S rRNA gene fragments, which indicated that abundant microbial communities existed in the bio-film, although high concentrations of ammonium and FA may inhibit the growth of the nitrite-oxidizing bacteria and other microorganisms in the reactor.     

Effects of arsenic on seed germination and physiological activities in wheat seedlings

The effects of arsenic(As)were investigated on seed germination,root and shoot length and their biomass and some other factors to elucidate the toxicity of As.The results showed low concentrations of As(O-1 mg/kg)stimulated seed germination and the growth of root and shoot,however,these factors all decreased gradually at high concentrations of As(5-20 mg/kg).The contents Of O2-,MDA,soluble protein and peroxidase(POD)activity all increased with increasing As concentrations.Soluble sugar content,ascorbate peroxidase(APX),and superoxide dismutase(SOD)activities decreased at low concentrations of As,and increased at high concentrations of As.While acetylsalicylic acid(ASA)and chlorophyll contents,catalase(CAT)activity displayed increasing trend when the concentrations of As was lower than 1 mg/kg,and then decreasing trend.By polyacrylamide gel electrophoresis(PAGE).As induced the expression of POD isozymes of wheat seedlings.As induced the expression of CAT isozymes but inhibited the expression of SOD isozymes of wheat seedlings at concentrations lower than 1 mg/kg.However,As inhibited the expression of CAT isozymes but induced the expression of SOD isozymes at concentrations higher than 5 mg/kg.The results indicated As could exert harmfulness in the early development stage of wheat at inappropriate concentrations.     

堆肥化过程中微生物群落的动态

通过变性梯度凝胶电泳（DGGE）和平板计数法对堆肥化过程中微生物的区系动态变化进行了研究.结果表明,在堆肥化过程中,微生物数量总的趋势是细菌的数量最多,放线菌次之,真菌的数量最少,中温微生物的数量始终高于高温微生物.当发酵结束后,中温微生物的数量低于发酵初始水平,高温放线菌和高温真菌的数量试验结束后高于初始水平,高温细菌的数量在整个堆肥化过程中变化不大.通过DGGE分析表明,发酵过程中细菌的种类发生了明显的更迭现象.发酵初期Bdellovibrio、Clostridia bacterium、Bacillus、Clostridium等占优势,中期Beta proteobacterium、Petrobacter succinimandens、Nitrospirae bacterium、Clostridium等占优势,后期Clostridium、Beta proteobacterium、Paenibacillus等占优势,而在整个堆肥化过程中Clostridium都是优势种.     

阿散酸及其降解产物对鱼和蚯蚓的遗传毒性

为了全面评价有机胂制剂阿散酸对水生生物和土壤生物的遗传毒性效应,文章分别以红鲤鱼和赤子爱胜蚓为生物材料,采用单细胞凝胶电泳技术从细胞水平上研究了阿散酸降解前后对鲤鱼肾细胞和蚯蚓体腔细胞DNA的损伤。鲤鱼肾细胞单细胞凝胶电泳试验结果表明,阿散酸降解之前和降解的第4周阿散酸对鲤鱼肾细胞DNA有显著损伤,表现出明显的遗传毒性作用,但第二周却不引起鲤鱼肾细胞DNA的任何损伤。蚯蚓体腔细胞单细胞凝胶电泳试验结果表明,阿散酸降解之前不能诱导蚯蚓体腔细胞DNA的明显损伤,不表现遗传毒性效应,与对照组相比没有显著性差异(P>0.05);但阿散酸降解开始后,各浓度的降解混合物体系都能引起蚯蚓体腔细胞DNA的明显损伤,表现出较强的遗传毒性作用。