基于高通量测序分析的生物修复石油污染土壤菌群结构变化

利用高通量测序技术对微生物修复石油污染土壤过程中的微生物群落结构变化进行研究.结果表明,经修复处理的土壤微生物群落结构及多样性发生明显变化.利用生物强化修复处理(BA)的土壤中,微生物丰富度与均匀度明显降低,土著菌群受到抑制,外加变形菌门(Proteobacteria)成为主要的优势菌门,相对丰度由修复前的37. 44%增加为87. 44%.假单胞菌属(Pseudomonas)成为土壤中的优势菌属,丰度由2. 99%增加为76. 37%;进行生物刺激修复处理的土壤(BS)菌群丰富度和均匀度与原污染土壤相比略有降低.菌群结构组成上,原优势菌门变形菌门(Proteobacteria)丰度由37. 44%降低为10. 90%,厚壁菌门(Firmicutes)丰度由9. 16%增加为35. 32%,属水平上,原优势菌属微小杆菌属(Exiguobacterium)和原小单胞菌属(Promicromonospora)丰度由8. 49%和18. 96%分别降低为2. 19%和14. 97%,诺卡氏菌属(Nocardioides)和芽孢杆菌属(Bacillus)丰度由5. 56%和0. 29%分别增加至28. 95%和22. 70%,成为主要优势菌属.生物强化修复处理引起土壤菌群多样性和结构发生明显变化,生物刺激修复处理可基本保持土壤菌群结构多样性不被破坏,土壤菌群结构的稳定有利于石油烃的生物降解.     

N. europaea/Nc. mobilis谱系在垃圾渗滤液处理中的脱氨贡献

为了解垃圾渗滤液处理系统中菌群结构与脱氨效果的关系,采用16S rRNA基因高通量测序技术分析了15个实际垃圾渗滤液处理系统中的自养氨氧化细菌（AOB）的群落结构,监测了其中1个处理系统中的AOB群落结构的周年变化,并采集实际垃圾渗滤液开展了为期45d的模拟试验.结果表明,Nitrosomonas属是垃圾渗滤液处理系统中的优势自养氨氧化细菌,其相对丰度与脱氨活性呈显著正相关（P<0.05）.在此菌属中,N.europaea、N.eutropha和N.halophila的相对丰度与脱氨活性显著正相关（P<0.05）,这3种菌在系统发育上同属于N.europaea/Nitrosococcus mobilis谱系,说明该谱系是实际垃圾渗沥液处理系统中的优势AOB类群,并对垃圾渗滤液脱氨有重要贡献.     

A landscape-scale framework to identify refugia from multiple stressors

From a conservation perspective, quantifying potential refugial capacity has been predominantly focused on climate refugia, which is critical for maintaining the persistence of species and ecosystems. However, protection from other stressors, such as human-induced changes in fire and hydrology, that cause habitat loss, degradation, and fragmentation is also necessary to ensure that conservation efforts focused on climate are not undermined by other threats. Thus, conceptual and methodological advances for quantifying potential refugia from multiple anthropogenic stressors are important to support conservation efforts. We devised a new conceptual approach, the domains of refugia, for assessing refugial capacity that identifies areas where exposure to multiple stressors is low. In our framework, patterns of environmental variability (e.g., increased frequency of warm summers), thresholds of resilience, and extent and intensity of stressors are used to identify areas of potential refugia from a suite of ongoing anthropogenic stressors (e.g., changes in fire regime). To demonstrate its utility, we applied the framework to a Southern California landscape. Sites with high refugial capacity (super-refugia sites) had on average 30% fewer extremely warm summers, 20% fewer fire events, 10% less exposure to altered river channels and riparian areas, and 50% fewer recreational trails than the surrounding landscape. Our results suggest that super-refugia sites (∼8200 km²) for some natural communities are underrepresented in the existing protected area network, a finding that can inform efforts to expand protected areas. Our case study highlights how considering exposure to multiple stressors can inform planning and practice to conserve biodiversity in a changing world.     

Studying ecological communities from a neutral standpoint: A review of models’ structure and parameter estimation

Neutral models provide an alternative to niche-based assembly rules of ecological communities by assuming that communities’ properties are shaped by the stochastic interplay between ecological drift, migration and speciation. The recent and ongoing interest about neutral assumptions has produced many developments on the theoretical side, with nevertheless limited echoes in terms of analyses of real-world data. The present review paper aims to help bridge the widening gap between modellers and field ecologists through two objectives. First, to provide a multi-criteria typology of the main neutral models, including those from population genetics that have not yet been transposed to ecology, by considering how the fundamental processes of ecological drift, speciation and migration are modelled and, specifically, how space is taken into account. Second, to review methods recently proposed to estimate models parameters from field data, a point that should be mastered to allow for broader applications.     

Plant Diversity Hotspots in the Atlantic Coastal Forests of Brazil

Abstract:  Plant-diversity hotspots on a global scale are well established, but smaller local hotspots within these must be identified for effective conservation of plants at the global and local scales. We used the distributions of endemic and endemic-threatened species of Myrtaceae to indicate areas of plant diversity and conservation importance within the Atlantic coastal forests ( Mata Atlântica ) of Brazil. We applied 3 simple, inexpensive geographic information system (GIS) techniques to a herbarium specimen database: predictive species-distribution modeling (Maxent); complementarity analysis (DIVA-GIS); and mapping of herbarium specimen collection locations. We also considered collecting intensity, which is an inherent limitation of use of natural history records for biodiversity studies. Two separate areas of endemism were evident: the Serra do Mar mountain range from Paraná to Rio de Janeiro and the coastal forests of northern Espírito Santo and southern Bahia. We identified 12 areas of approximately 35 km² each as priority areas for conservation. These areas had the highest species richness and were highly threatened by urban and agricultural expansion. Observed species occurrences, species occurrences predicted from the model, and results of our complementarity analysis were congruent in identifying those areas with the most endemic species. These areas were then prioritized for conservation importance by comparing ecological data for each.     

Biofuel Plantations on Forested Lands: Double Jeopardy for Biodiversity and Climate

Abstract: The growing demand for biofuels is promoting the expansion of a number of agricultural commodities, including oil palm (Elaeis guineensis). Oil‐palm plantations cover over 13 million ha, primarily in Southeast Asia, where they have directly or indirectly replaced tropical rainforest. We explored the impact of the spread of oil‐palm plantations on greenhouse gas emission and biodiversity. We assessed changes in carbon stocks with changing land use and compared this with the amount of fossil‐fuel carbon emission avoided through its replacement by biofuel carbon. We estimated it would take between 75 and 93 years for the carbon emissions saved through use of biofuel to compensate for the carbon lost through forest conversion, depending on how the forest was cleared. If the original habitat was peatland, carbon balance would take more than 600 years. Conversely, planting oil palms on degraded grassland would lead to a net removal of carbon within 10 years. These estimates have associated uncertainty, but their magnitude and relative proportions seem credible. We carried out a meta‐analysis of published faunal studies that compared forest with oil palm. We found that plantations supported species‐poor communities containing few forest species. Because no published data on flora were available, we present results from our sampling of plants in oil palm and forest plots in Indonesia. Although the species richness of pteridophytes was higher in plantations, they held few forest species. Trees, lianas, epiphytic orchids, and indigenous palms were wholly absent from oil‐palm plantations. The majority of individual plants and animals in oil‐palm plantations belonged to a small number of generalist species of low conservation concern. As countries strive to meet obligations to reduce carbon emissions under one international agreement (Kyoto Protocol), they may not only fail to meet their obligations under another (Convention on Biological Diversity) but may actually hasten global climate change. Reducing deforestation is likely to represent a more effective climate‐change mitigation strategy than converting forest for biofuel production, and it may help nations meet their international commitments to reduce biodiversity loss.     

The Potential for Species Conservation in Tropical Secondary Forests

Abstract: In the wake of widespread loss of old‐growth forests throughout the tropics, secondary forests will likely play a growing role in the conservation of forest biodiversity. We considered a complex hierarchy of factors that interact in space and time to determine the conservation potential of tropical secondary forests. Beyond the characteristics of local forest patches, spatial and temporal landscape dynamics influence the establishment, species composition, and persistence of secondary forests. Prospects for conservation of old‐growth species in secondary forests are maximized in regions where the ratio of secondary to old‐growth forest area is relatively low, older secondary forests have persisted, anthropogenic disturbance after abandonment is relatively low, seed‐dispersing fauna are present, and old‐growth forests are close to abandoned sites. The conservation value of a secondary forest is expected to increase over time, as species arriving from remaining old‐growth forest patches accumulate. Many studies are poorly replicated, which limits robust assessments of the number and abundance of old‐growth species present in secondary forests. Older secondary forests are not often studied and few long‐term studies are conducted in secondary forests. Available data indicate that both old‐growth and second‐growth forests are important to the persistence of forest species in tropical, human‐modified landscapes.     

The design and implementation of sustainable plant diversity conservation program for alpine meadows and pastures

The paper describes the design and implementation of a plant biodiversity conservation program that was developed under funding and time constraints for diverse ecological, social, and institutional environments. The biodiversity program for alpine meadows and pastures located in the Swiss Canton of the Grisons is used as an example. The design of the sustainable program relied on existing legislation, accounted for limited ecological knowledge and expertise, and considered biodiversity as a common-pool resource. The trend to intensified cultivation of restricted areas required fast action, while the sustainability of the program design had to take into account institutional diversity. Fifteen habitats and plant communities worth conserving were known, and 57 plant species were identified as indicator species for establishing an inventory and for monitoring purposes. A small subset of 16 well known plant species was presented to the farming communities. They were invited to notify the areas in which they observed the presence of these plants. In different regions of the Canton a total number of 39 paraecologists were trained to inspect the areas notified by farmers and to recommend possible incorporation into the Cantonal inventory. This was done once the farmers signed a contract in which they agreed to follow adequate management practices. The farmers received subsidies to compensate for their losses. Communal authorities controlled the fertilizer input and cutting dates, while the paraecologists were trained to monitor plant biodiversity. The program started in 1992 and the initial phase of the inventory was terminated in 1996. At the beginning of 1996, an inventory of 2617.19 ha, most of which are meadows, was taken and managed according to the rules specified in the contract. The program was considered successful because (i) of the size of the area in the inventory, (ii) about 30%of the farmers participated, and (iii) farmers started cultivating previously abandoned farmland.     

西部大开发中的生物多样性的保护

全球的生物物种在急剧减少,而此情景也呈现于我国的西部在,在机遇与挑战同在的西部大开发过程中如何切实效保护生物多样性,无疑已成为我们必须关注和思考的问题。本文从生物多样性的内涵、生物多样性的价值、生物多样性的丧失及保护生物多样性的必要性及对策等方面,论述笔者对预防、保护、恢复生物多样性的几点思考,但愿能引起广大社会的关注和支持。     

塔河上游地区阿拉尔段天然退化生态系统植物群落物种多样性特征分析及恢复途径

通过对塔河上游阿拉尔地区天然植被的物种多样性的特征分析,并结合实际情况,得出了该地区天然植被生态系统在人类干扰下普遍存在退化现象,尤其在绿洲—荒漠过渡带,这种现象更为严重。应采取有效措施对天然植被特别是过渡带的植被进行生态恢复。另外还讨论了本地区植被恢复与重建的对策。