海洋环境基因组学在海洋生态研究中的应用

海洋环境基因组学是功能基因组学的一个分支学科,它将基因组学的最新技术引入到海洋生态环境的研究当中,得到了许多有价值的研究成果,显示出巨大的发展潜力。文章总结了海洋环境基因组学所开展的工作和已取得的成果,指出目前海洋环境基因组学的工作主要集中在三个领域:海洋生物基因资源文库的建立与完善;海洋生物对环境胁迫的应激反应及生理机制的研究;探索不同生物种群的基因表达谱是否与生物地理分布相关联。并着重讨论了利用基因组学技术研究环境胁迫对海洋生物物种的分布、生物物种间的相互作用以及水生物疾病的影响。如海洋环境基因组学通过测定基因表达谱的变化,研究海洋生物对环境温度的生理响应,绘制出生物地理图谱;通过测定基因转录水平的变化,更深入地了解温度变化所造成的生理支出,从而预测热气候漂移可能给海洋生态环境所造成的影响。在水生物疾病的研究方面,海洋环境基因组学用DNA微阵列技术分析染病生物的基因表达谱,筛选出发生变化的基因表达,为理解病毒感染机制提供了大量信息。还可以深入研究环境胁迫因子与微生物种群群落的组成关系,并由此找到通过维持水体的微生态平衡来消除某些病害发生的环境条件。     

Direct-push geochemical profiling for assessment of inorganic chemical heterogeneity in aquifers

Discrete-depth sampling of inorganic groundwater chemistry is essential for a variety of site characterization activities. Although the mobility and rapid sampling capabilities of direct-push techniques have led to their widespread use for evaluating the distribution of organic contaminants, complementary methods for the characterization of spatial variations in geochemical conditions have not been developed. In this study, a direct-push-based approach for high-resolution inorganic chemical profiling was developed at a site where sharp chemical contrasts and iron-reducing conditions had previously been observed. Existing multilevel samplers (MLSs) that span a fining-upward alluvial sequence were used for comparison with the direct-push profiling. Chemical profiles obtained with a conventional direct-push exposed-screen sampler differed from those obtained with an adjacent MLS because of sampler reactivity and mixing with water from previous sampling levels. The sampler was modified by replacing steel sampling components with stainless-steel and heat-treated parts, and adding an adapter that prevents mixing. Profiles obtained with the modified approach were in excellent agreement with those obtained from an adjacent MLS for all constituents and parameters monitored (Cl, NO(3), Fe, Mn, DO, ORP, specific conductance and pH). Interpretations of site redox conditions based on field-measured parameters were supported by laboratory analysis of dissolved Fe. The discrete-depth capability of this approach allows inorganic chemical variations to be described at a level of detail that has rarely been possible. When combined with the mobility afforded by direct-push rigs and on-site methods of chemical analysis, the new approach is well suited for a variety of interactive site-characterization endeavors.     

Analysis of the long-term behavior of solute transport with nonlinear equilibrium sorption using breakthrough curves and temporal moments

We analyzed the long-term behavior of breakthrough curves (BTCs) and temporal moments of a solute subjected to Freundlich equilibrium sorption (s = kc(n)). For one-dimensional transport in a homogeneous porous medium, we derived a power-law relation between travel time, tau, and solute displacement, chi, with the exponent being equal to the Freundlich n exponent. The mean solute velocity, derived from the first time moment, was found to change as tau(n-1). For n values larger than 0.66, the second time moment could be related to c chi(2/n), where c is a constant. An approach based on the use of a critical concentration was developed to estimate the presence of the asymptotic regime in the tail of the BTC. This approach was tested successfully using numerical case studies. One-dimensional numerical simulations with varying values of k, n and initial mass were run to verify the closed form analytical expressions for the large time behavior of temporal moments and the tailing part of breakthrough curves. Good agreement between the slope of the tailing part of log-log transformed BTCs and the predicted slope using asymptotic theory was found. Asymptotic theory in general underestimated the magnitude of the concentration in the tail. The quality of the estimated concentrations in the tail improved for small values of the dispersivity. Experimental BTCs of uranin and benazolin were analyzed in combination with sorption/desorption batch experiments using asymptotic theory. A good agreement between the value of n parameter derived from desorption experiment with benazolin and the value of the n parameter derived from the tail of the BTC was found.     

Temporal variability of bioavailable Cd,Hg, Zn,Mn and Al in an upwelling regime

Monthly variability of Cd, Hg, Zn, Mn and Al concentrations in mussels (Mytilus californianus) soft tissue and brown seaweed (Macrocystis pyrifera) was studied at a pristine rocky shore off San Quintin Bay, Baja California, México. The results were related to climatic and hydrographic conditions and to the physiological state of the mussels (condition index) by correlation analysis and principal component analysis (PCA). A "normalization" to account for the variability induced by the physiological state of the mussel was performed. The PCA was performed in two ways to relate the environmental variables and the condition index to: (1) the metal concentrations in mussels, and (2) the "normalized" mussel concentrations. The association of the variability of Cd with the upwelling season was revealed in both PCAs. The temporal variability of this metal in mussels was highly correlated to that in seaweed, suggesting that the dissolved phase determined the variability of Cd in mussels. However, for Hg, Zn, Mn and Al the results from both PCAs were different. The first PCA showed the relationship of these metals to pluvial precipitation and to the condition index. The PCA for the normalized mussel concentrations showed that, after eliminating the effect of the condition index, only Al was related to pluvial precipitation. Manganese, and to a less degree Zn, were related to these metals in seaweed. Because zinc is an essential element in mussels, some regulation of their internal concentrations is likely. Mercury was not detected in seaweed, but because of its reactive nature, it is not expected that the dissolved fraction could be a significant pathway; therefore, it can be concluded that its temporal variability was determined by the variability in the condition index only.     

Regulation of honey bee division of labor by colony age demography

The age at which worker honey bees begin foraging varies under different colony conditions. Previous studies have shown that juvenile hormone (JH) mediates this behavioral plasticity, and that worker-worker interactions influence both JH titers and age at first foraging. These results also indicated that the age at first foraging is delayed in the presence of foragers, suggesting that colony age demography directly influences temporal division of labor. We tested this hypothesis by determining whether behavioral or physiological development can be accelerated, delayed, or reversed by altering colony age structure. In three out of three trials, earlier onset of foraging was induced in colonies depleted of foragers compared to colonies depleted of an equal number of bees across all age classes. In two out of three trials, delayed onset of foraging was induced in colonies in which foragers were confined compared to colonies with free-flying foragers. Finally, in three out of three trials, both endocrine and exocrine changes associated with reversion from foraging to brood care were induced in colonies composed of all old bees and devoid of brood; JH titers decreased and hypopharyngeal glands regenerated. These results demonstrate that plasticity in age-related division of labor in honey bee colonies is at least partially controlled by social factors. The implications of these results are discussed for the recently developed ‘‘activator-inhibitor” model for honey bee behavioral development. Received: 8 November 1995/Accepted after revision: 10 May 1996     

基于细菌毒性测试与小鼠肺基因转录分析的PM2.5健康效应

尽管大量流行病学和毒理学研究表明,PM_(2.5)暴露会导致一系列肺部疾病,但是其毒性机制尚不明确.本研究选取不同浓度梯度PM_(2.5)颗粒物样品进行细菌毒性评价,结果显示颗粒物的发光细菌急性毒性、遗传毒性分别为低毒和阴性.此外,采用气管灌注方法模拟小鼠呼吸暴露,研究了肺脏病理改变及差异基因表达.肺脏病理切片分析显示,PM_(2.5)暴露造成肺组织不同程度炎症反应和纤维化损伤,并呈现浓度越高、损伤程度越明显的现象.通路分析发现PM_(2.5)暴露影响到核糖体蛋白功能、脂肪酸与胆固醇代谢功能的正常表达,提示肺部炎症反应源于基因损害,其造成的损害后果可能是不可逆的.GO聚类分析发现免疫功能发生聚类富集,相关基因功能异常表达可能是造成肺部炎症的具体路径.这些发现有助于了解PM_(2.5)暴露危害路径和机制.     

Dynamics of major air pollutants from crop residue burning in mainland China, 2000–2014

Based on satellite image data and China's Statistical Yearbooks(2000 to 2014), we estimated the total mass of crop residue burned, and the proportion of residue burned in the field vs.indoors as domestic fuel. The total emissions of various pollutants from the burning of crop residue were estimated for 2000-2014 using the emission factor method. The results indicate that the total amount of crop residue and average burned mass were 8690.9 Tg and4914.6 Tg, respectively. The total amount of emitted pollutants including CO_2, CO, NOx,VOCs, PM_(2.5), OC(organic carbon), EC(element carbon) and TC(total carbon) were 4212.4–8440.9 Tg, 192.8–579.4 Tg, 4.8–19.4 Tg, 18.6–61.3 Tg, 18.8–49.7 Tg, 6.7–31.3 Tg, 2.3–4.7 Tg, and8.5–34.1 Tg, respectively. The emissions of pollutants released from crop residue burning were found to be spatially variable, with the burning of crop residue mainly occurring in Northeast, North and South China. In addition, pollutant emissions per unit area(10 km ×10 km) were mostly concentrated in the central and eastern regions of China. Emissions of CO_2, NOx, VOCs, OC and TC were mainly from rice straw burning, while burning of corn and wheat residues contributed most to emissions of CO, PM_(2.5) and EC. The increased ratio of PM_(2.5) emissions from crop residue burning to the total emitted from industry during the study period is attributed to the implementation of strict emissions management policies in Chinese industry. This study also provides baseline data for assessment of the regional atmospheric environment.     

A spatial approach to combatting wildlife crime

Poaching can have devastating impacts on animal and plant numbers, and in many countries has reached crisis levels, with illegal hunters employing increasingly sophisticated techniques. We used data from an 8‐year study in Savé Valley Conservancy, Zimbabwe, to show how geographic profiling—a mathematical technique originally developed in criminology and recently applied to animal foraging and epidemiology—can be adapted for use in investigations of wildlife crime. The data set contained information on over 10,000 incidents of illegal hunting and the deaths of 6,454 wild animals. We used a subset of data for which the illegal hunters’ identities were known. Our model identified the illegal hunters’ home villages based on the spatial locations of the hunting incidences (e.g., snares). Identification of the villages was improved by manipulating the probability surface inside the conservancy to reflect the fact that although the illegal hunters mostly live outside the conservancy, the majority of hunting occurs inside the conservancy (in criminology terms, commuter crime). These results combined with rigorous simulations showed for the first time how geographic profiling can be combined with GIS data and applied to situations with more complex spatial patterns, for example, where landscape heterogeneity means some parts of the study area are less likely to be used (e.g., aquatic areas for terrestrial animals) or where landscape permeability differs (e.g., forest bats tend not to fly over open areas). More broadly, these results show how geographic profiling can be used to target antipoaching interventions more effectively and more efficiently and to develop management strategies and conservation plans in a range of conservation scenarios.     

2000～2010年贵州省植被净初级生产力时空变化研究

为了探明贵州省植被净初级生产力(NPP)在2000~2010年的变化状况,以2000~2010年植被NPP数据为基础,运用ArcG IS和SPSS进行综合分析。结果表明:近11年间,草地、城镇用地、阔叶林、针叶林和湿地等面积呈增加趋势,而灌木林和农田则持续减少,其中农田面积变化尤为明显;2000~2010年贵州省植被NPP变化较大,NPP变化范围为778~889 g/(m2·a),平均值为828.1 g/(m2·a),NPP缓慢上升趋势;全省NPP分布有明显地域性差异,铜仁和六盘水为显著增加(P0.05),其余地州市增加缓慢(P0.05)。黔东南年均NPP最高((927±111)g/(m 2·a)),毕节最低((725±107)g/(m2·a))。NPP变化趋势为东南向西北方向递减,而往西北方向NPP波动程度明显;阔叶林和灌木林缓慢下降,而针叶林和针阔混交林则上升。NPP表现为针阔混交林阔叶林针叶林灌木林。     

Within-nest temporal polyethism in the honey bee

A well-regulated division of labor has been one of the core adaptations leading to the success of the social insects. Honeybee division of labor has been classically viewed as a sequence of age-related changes in task performance. Kolmes questioned this view arguing that his studies did not support the existence of any age-related within-nest specialization. To resolve this controversy, Kolmes and Seeley conducted a joint study with mixed results. They found support for a cell cleaning caste, but diverged on whether their results supported distinct nursing and middle age castes. In this paper, I follow up on their work to resolve the question of caste number in within-nest honey bees. To determine whether nurses (typically aged 4–12 days) and middle-aged bees (aged 12–20 days) have distinct task repertoires, I conducted focal animal observations on a large number of workers in both age groups working within the same nests at the same time. The results support their being two castes of within-nest bees. Young bees specialized on brood care tasks, while middle-aged bees specialized on nectar processing and nest maintenance. Middle-aged bees were observed caring for brood in less than 1% of the observations. Moreover, both castes exhibited movement patterns that correspond to the traditional view that nurses stay within the broodnest, while middle-aged bees move around a great deal in search of work throughout the nest. A review of studies conducted since the debate of Seeley and Kolmes supports the reliability of these results. This work has relevance for proximate models of temporal polyethism, as it is often assumed by such models that there is only one within-nest caste in the honeybee.