Moving from trends to benchmarks by using regression tree analysis to find inbreeding thresholds in a critically endangered bird

Understanding how inbreeding affects endangered species in conservation breeding programs is essential for their recovery. The Hawaiian Crow (‘Alalā) (Corvus hawaiiensis) is one of the world's most endangered birds. It went extinct in the wild in 2002, and, until recent release efforts starting in 2016, nearly all of the population remained under human care for conservation breeding. Using pedigree inbreeding coefficients (F), we evaluated the effects of inbreeding on Hawaiian Crow offspring survival and reproductive success. We used regression tree analysis to identify the level of inbreeding (i.e., inbreeding threshold) that explains a substantial decrease in ‘Alalā offspring survival to recruitment. Similar to a previous study of inbreeding in ‘Alalā, we found that inbreeding had a negative impact on offspring survival but that parental (vs. artificial) egg incubation improved offspring survival to recruitment. Furthermore, we found that inbreeding did not substantially affect offspring reproductive success, based on the assumption that offspring that survive to adulthood breed with distantly related mates. Our novel application of regression tree analysis showed that offspring with inbreeding levels exceeding F = 0.098 were 69% less likely to survive to recruitment than more outbred offspring, providing a specific threshold value for ongoing population management. Our results emphasize the importance of assessing inbreeding depression across all life history stages, confirm the importance of prioritizing parental over artificial egg incubation in avian conservation breeding programs, and demonstrate the utility of regression tree analysis as a tool for identifying inbreeding thresholds, if present, in any pedigree-managed population.     

Mapping Locust Habitats in the Amudarya River Delta,Uzbekistan with Multi-Temporal MODIS Imagery

Reed beds of Phragmites australis in the River Amudarya delta near the Aral Sea constitute permanent breeding areas of the Asian Migratory locust, Locusta migratoria migratoria. Every year, thousands of hectares are treated with broad-spectrum insecticides to prevent locust swarms from damaging crops in adjacent areas. To devise efficient locust monitoring and management plans, accurate and updated information about the spatial distribution of reeds is necessary. Given the vast geographic extent of the delta, traditional, ground survey methods are inadequate. Remotely sensed data collected by the MODIS sensor aboard the TERRA satellite provide a useful tool to characterize the spatial distribution of reeds. Multi-temporal MODIS data, collected at different times of the growing season, were used to generate spectral-temporal signatures for reeds and other land cover classes. These spectral-temporal signatures were matched with reed phenology. MODIS information was digitally classified to generate a land cover map with an overall accuracy of 74%. MODIS data captured 87% of the ground-verified reed locations. Estimates derived from MODIS data indicate that 18% of the study area was covered by reeds. However, high commission error resulted from misclassification of reeds mixed with shrubs class and shrubs class as reeds. This could have resulted in overprediction of the area covered by reeds. Additional research is needed to minimize the overlap between reeds and other vegetation classes (shrubs, and reed and shrub mix). Nevertheless, despite its relatively low spatial resolution (250 m), multi-temporal MODIS data were able to adequately capture the distribution of reeds. Instead of blanketing the fragile wetland ecosystem of the Amudarya delta with chemical anti-locust treatments, plant protection specialists can use this information to devise ecologically sound pest management plans aimed at reducing the adverse environmental impact in the zone of the Aral Sea ecological catastrophe. MODIS methodology to identify reed stands can be applicable to the Migratory locust habitats in other geographic areas.     

Effects of an invasive ant on land snails in the Ogasawara Islands

We investigated how Pheidole megacephala has affected endemic achatinellid snails because these snails are excellent indicators of the impact of ants and they have high conservation value in Ogasawara. In 2015 we surveyed the Minamizaki area of Hahajima Island of Ogasawara, designated a core zone of the World Heritage Site, for P. megacephala. In Minamizaki, we determined the distribution and density of achatinellid snails in 2015 and compared these data with their distribution and density in 2005. Land cover in the survey area was entirely forest. We also tested whether P. megacephala preyed on achatinellid snails in the laboratory. P. megacephala was present in the forested areas of Minamizaki. Achatinellid snails were absent in 19 of 39 sites where P. megacephala was present, whereas in other areas densities of the snails ranged from 2 to 228 individuals/site. In the laboratory, P. megacephala carried 6 of 7 achatinellid snails and a broken shell was found. Snail distribution and density comparisons and results of the feeding experiments suggest that the presence of P. megacephala has contributed to the decline of achatinellid snails in forests in the survey area. Yet, P. megacephala is not on the official list of invasive non‐native species. Stakeholders using the list of invasive species to develop conservation programs should recognize that invasiveness of non‐native species differs depending on the ecosystem and that official lists may not be complete.     

Effectiveness of management zoning designed for flagship species in protecting sympatric species

Flagship species have been used widely as umbrella species (i.e., species with large home range whose protection often provides protection for sympatric species) in the management of China's nature reserves. This conflation of flagship and umbrella species is best represented by the giant panda (Ailuropoda melanoleuca) and other large, endangered mammals designated as conservation targets in site selection and planning of reserves. Few empirical studies have tested the effectiveness of flagship species as surrogates for a broader range of sympatric species. Using extensive camera-trap data, we examined the effectiveness of management zones designated to protect flagship (target) species in conserving sympatric species in 4 wildlife reserves (Gutianshan, Changqing, Laohegou, and Wolong). We tested whether the progression from peripheral to core zones was associated with an increasing habitat association for both target and sympatric species. The distribution patterns of the study species across the zones in each reserve indicated a disparity between management zones and the species’ habitat requirements. Management zone was included in the final model for all target species, and most of them had higher occurrence in core zones relative to less-protected zones, but zone was not a predictor for most of the sympatric species. When management zone was associated with the occurrence of sympatric species, threatened species generally had higher detections in core zones, whereas common species had higher detections outside of the core zone. Our results suggested that reserve planning based on flagship species does not adequately protect sympatric species due to their specialized habitat requirements. We recommend re-examining the effectiveness of management zoning and urge a multispecies and reserve-wide monitoring plan to improve protection of China's wildlife.     

苏云金芽孢杆菌抗东亚飞蝗(Locusta migratoria manilensis)的活性

采用毒力生物测定的方法,测定了600株从我国各地土壤和死虫等样品中分离的苏云金芽孢杆菌对东亚飞蝗的毒力.这些菌株几乎分布于已知的70个H血清型.在600株苏云金芽孢杆菌中,有560株(占93.4%)对东亚飞蝗无毒(死亡率小于20%),只有3株(占0.5%)对东亚飞蝗有较高毒性(死亡率大于70%).同时对筛选出的特异性菌株的杀虫活性进行了进一步研究.图2表2参8     

Bibliometric investigation of the integration of animal personality in conservation contexts

Consistent individual differences in behavior, commonly termed animal personality, are a widespread phenomenon across taxa that have important consequences for fitness, natural selection, and trophic interactions. Animal personality research may prove useful in several conservation contexts, but which contexts remains to be determined. We conducted a structured literature review of 654 studies identified by combining search terms for animal personality and various conservation subfields. We scored the relevance of personality and conservation issues for each study to identify which studies meaningfully integrated the 2 fields as opposed to surface-level connections or vague allusions. We found a taxonomic bias toward mammals (29% of all studies). Very few amphibian or reptile studies applied personality research to conservation issues (6% each). Climate change (21%), invasive species (15%), and captive breeding and reintroduction (13%) were the most abundant conservation subfields that occurred in our search, though a substantial proportion of these papers weakly integrated conservation and animal personality (climate change 54%, invasive species 51%, captive breeding and reintroduction 40%). Based on our results, we recommend that researchers strive for consistent and broadly applicable terminology when describing consistent behavioral differences to minimize confusion and improve the searchability of research. We identify several gaps in the literature that appear to be promising and fruitful avenues for future research, such as disease transmission as a function of sociability or exploration as a driver of space use in protected areas. Practitioners can begin informing future conservation efforts with knowledge gained from animal personality research.     

Implications for biological invasion of non-native plants for sale in the world's largest online market

Internet trade is increasingly recognized as a dispersal pathway of non-native plant species that is difficult to monitor. We sought to identify non-native flora present in the Chinese online market, the largest e-commerce market globally, and to decipher the effect of existing trade regulations, among other variables, on e-trading patterns and to inform policy. We used a comprehensive list of 811 non-native plant species in China present in 1 of the 3 phases of the invasion continuum (i.e., introduced, naturalized, and invasive). The price, propagule types, and quantities of the species offered for sale were retrieved from 9 online stores, including 2 of the largest platforms. Over 30% of the non-native species were offered for sale in the online marketplaces; invasive non-native species dominated the list (45.53%). No significant price difference was observed across the non-native species of the 3 invasion categories. Among the 5 propagule types, a significantly higher number of non-native species were offered for sale as seeds. The regression models and path analyses consistently revealed a direct positive effect of the number of uses and species’ minimum residence time and an indirect effect of biogeography on the pattern of trade in non-native plant species when minimal phylogenetic signal was detected. A review of the existing phytosanitary regulations in China revealed their inadequacy in managing e-trading of non-native plant species. To address the problem, we propose integration of a standardized risk assessment framework that considers perceptions of stakeholders and is adaptable based on continuous surveillance of the trade network. If implemented successfully, the measures could provide a template for other countries to strengthen trading regulations for non-native plant species and take proactive management measures.     

A Multiscale Network Analysis of Protected‐Area Connectivity for Mammals in the United States

Abstract: Protected areas must be close, or connected, enough to allow for the preservation of large‐scale ecological and evolutionary processes, such as gene flow, migration, and range shifts in response to climate change. Nevertheless, it is unknown whether the network of protected areas in the United States is connected in a way that will preserve biodiversity over large temporal and spatial scales. It is also unclear whether protected‐area networks that function for larger species will function for smaller species. We assessed the connectivity of protected areas in the three largest biomes in the United States. With methods from graph theory—a branch of mathematics that deals with connectivity and flow—we identified and measured networks of protected areas for three different groups of mammals. We also examined the value of using umbrella species (typically large‐bodied, far‐ranging mammals) in designing large‐scale networks of protected areas. Although the total amount of protected land varied greatly among biomes in the United States, overall connectivity did not. In general, protected‐area networks were well connected for large mammals but not for smaller mammals. Additionally, it was not possible to predict connectivity for small mammals on the basis of connectivity for large mammals, which suggests the umbrella species approach may not be an appropriate design strategy for conservation networks intended to protect many species. Our findings indicate different strategies should be used to increase the likelihood of persistence for different groups of species. Strategic linkages of existing lands should be a conservation priority for smaller mammals, whereas conservation of larger mammals would benefit most from the protection of more land.     

Applying a values-based decision process to facilitate comanagement of threatened species in Aotearoa New Zealand

Ko koe ki tēnā, ko ahau ki tēnai kīwai o te kete (you at that, and I at this handle of the basket). This Māori (New Zealanders of indigenous descent) saying conveys the principle of cooperation—we achieve more through working together, rather than separately. Despite decades of calls to rectify cultural imbalance in conservation, threatened species management still relies overwhelmingly on ideas from Western science and on top-down implementation. Values-based approaches to decision making can be used to integrate indigenous peoples’ values into species conservation in a more meaningful way. We used such a values-based method, structured decision making, to develop comanagement of pekapeka (Mystacina tuberculata) (short-tailed bat) and tara iti (Sternula nereis davisae) (Fairy Tern) between Māori and Pākehā (New Zealanders of European descent). We implemented this framework in a series of workshops in which facilitated discussions were used to gather expert knowledge to predict outcomes and make management recommendations. For both species, stakeholders clearly stated their values as fundamental objectives from the start, which allowed alternative strategies to be devised that naturally addressed their diverse values, including mātauranga Māori (Māori knowledge and perspectives). On this shared basis, all partners willingly engaged in the process, and decisions were largely agreed to by all. Most expectations of conflicts between values of Western science and Māori culture were unfounded. Where required, positive compromises were made by jointly developing alternative strategies. The values-based process successfully taha wairua taha tangata (brought both worlds together to achieve the objective) through codeveloped recovery strategies. This approach challenges the traditional model of scientists first preparing management plans focused on biological objectives, then consulting indigenous groups for approval. We recommend values-based approaches, such as structured decision making, as powerful methods for development of comanagement conservation plans between different peoples.     

Modeling population effects of the Deepwater Horizon oil spill on a long-lived species

The 2010 Deepwater Horizon (DWH) oil spill exposed common bottlenose dolphins (Tursiops truncatus) in Barataria Bay, Louisiana to heavy oiling that caused increased mortality and chronic disease and impaired reproduction in surviving dolphins. We conducted photographic surveys and veterinary assessments in the decade following the spill. We assigned a prognostic score (good, fair, guarded, poor, or grave) for each dolphin to provide a single integrated indicator of overall health, and we examined temporal trends in prognostic scores. We used expert elicitation to quantify the implications of trends for the proportion of the dolphins that would recover within their lifetime. We integrated expert elicitation, along with other new information, in a population dynamics model to predict the effects of observed health trends on demography. We compared the resulting population trajectory with that predicted under baseline (no spill) conditions. Disease conditions persisted and have recently worsened in dolphins that were presumably exposed to DWH oil: 78% of those assessed in 2018 had a guarded, poor, or grave prognosis. Dolphins born after the spill were in better health. We estimated that the population declined by 45% (95% CI 14–74) relative to baseline and will take 35 years (95% CI 18–67) to recover to 95% of baseline numbers. The sum of annual differences between baseline and injured population sizes (i.e., the lost cetacean years) was 30,993 (95% CI 6607–94,148). The population is currently at a minimum point in its recovery trajectory and is vulnerable to emerging threats, including planned ecosystem restoration efforts that are likely to be detrimental to the dolphins’ survival. Our modeling framework demonstrates an approach for integrating different sources and types of data, highlights the utility of expert elicitation for indeterminable input parameters, and emphasizes the importance of considering and monitoring long-term health of long-lived species subject to environmental disasters. Article impact statement: Oil spills can have long-term consequences for the health of long-lived species; thus, effective restoration and monitoring are needed.