Preserving Population Allele Frequencies in Ex Situ Conservation Programs

Abstract: Optimization of contributions of parents to progeny by minimizing the average coancestry of the progeny is an effective strategy for maintaining genetic diversity in ex situ conservation programs, but its application on the basis of molecular markers has the negative collateral effect of homogenizing the allelic frequencies at each locus. Because one of the objectives of a conservation program is to preserve the genetic composition of the original endangered population, we devised a method in which markers are used to maintain the allele frequency distribution at each locus as closely as possible to that of the native population. Contributions of parents were obtained so as to minimize changes in allele frequency for a set of molecular markers in a population of reduced size. We used computer simulations, under a range of scenarios, to assess the effectiveness of the method in comparison with methods in which contributions of minimum coancestry are sought, either making use of molecular markers or genealogical information. Our simulations indicated that the proposed method effectively maintained the original distribution of allele frequencies, particularly under strong linkage, and maintained acceptable levels of genetic diversity in the population. Nevertheless, contributions of minimum coancestry determined from pedigree information but ignoring the genealogy previous to the conservation program, was the most effective method for maintaining allelic frequencies in realistic situations.     

Syndromic associations with congenital anomalies of the fetal thorax and abdomen

Anomalies of the thorax and abdomen can be found in a number of genetic syndromes. Whilst it may not be possible to make a definitive diagnosis before birth, knowledge of the potential associations can be useful for the prenatal diagnostician when examining the fetus and counselling the parents. In this article, we describe conditions where other features may be detectable using prenatal ultrasound. We describe the features, potential diagnostic aids and prognosis. The tables list other potential features that may be identified. The range of conditions that can occur emphasises the value of genetic input in the management of a fetus with an apparently normal karyotype and multiple anomalies, the need to save material for future molecular analysis and the requirement of a detailed examination after delivery. These are needed in order to make accurate diagnoses and advise parents with regard to recurrence risks and the potential for prenatal diagnosis in future pregnancies. Copyright © 2008 John Wiley & Sons, Ltd.     

Effects of Habitat Fragmentation on Effective Population Size in the Endangered Rio Grande Silvery Minnow

Abstract:  We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow ( Hybognathus amarus ). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over the current geographic range, consistent with high gene flow despite fragmentation by dams. Maximum-likelihood analysis of temporal genetic data indicated, however, that present-day effective population size ( N_eV ) of the largest extant population of this species was 78 and the ratio of effective size to adult numbers ( N_eV/N ) was ∼ 0.001 during the study period (1999 to 2001). Coalescent-based analytical methods provided an estimate of historical (river fragmentation was completed in 1975) effective size ( N_eI  ) that ranged between 10⁵ and 10⁶. We propose that disparity between contemporary and historical estimates of N_e and low contemporary N_e/N result from recent changes in demography related to river fragmentation. Rio Grande silvery minnows produce pelagic eggs and larvae subject to downstream transport through diversion dams. This life-history feature results in heavy losses of yearly reproductive effort to emigration and mortality, and extremely large variance in reproductive success among individuals and spawning localities. Interaction of pelagic early life history and river fragmentation has altered demographic and genetic dynamics of remnant populations and reduced N_e to critically low values over ecological time.     

钉螺的水力输送

血吸虫病是中国和其它许多国家的一种地方性流行病,钉螺是血吸虫唯一的中国宿主,钉螺运移是血吸虫病蔓延的主要原因。研究钉螺在河道中的输移规律,对控制血吸虫病流行十分重要。野外观测和实验研究表明、钉螺输移、尤其是大量钉螺的远距离输移,是借助于水流完成的,河流中钉螺的水力输送主要是以悬移质和移质的形式,以及被漂的挟带。     

STREAM TYPES IN THE DES MOINES RIVER BASIN1

Stream tributaries in the Des Moines River basin have been classified according to the glacial terrain through which they flow. Three stream types were categorized as follows: (1) streams that flow entirely on Wisconsin drift, (2) streams that flow entirely on Kansan drift, and (3) streams that have their headwaters located on new drift but have their lower reaches flowing on older drift. Selected channel and valley characteristics were measured and used to verify the stream type classification. Five variables were chosen for use in a multiple linear discriminatory analysis, which is a statistical technique developed for the purpose of classifying observations into one of several categories which have been predetermined. The streams in each group were verified with the exception of three anomalies based on the probability associated with the largest linear discriminant function. The rationale for the three anomalous streams is not easily determined. But, they are considered to be associated with pre-glacial drainage or at least pre-Wisconsin age drainage. Otherwise, the analysis shows that the major channels and valleys in the Des Moines River basin tend to reflect the glaciated upland surface.