Near-term forecasts of stream temperature using deep learning and data assimilation in support of management decisions

Deep learning (DL) models are increasingly used to make accurate hindcasts of management-relevant variables, but they are less commonly used in forecasting applications. Data assimilation (DA) can be used for forecasts to leverage real-time observations, where the difference between model predictions and observations today is used to adjust the model to make better predictions tomorrow. In this use case, we developed a process-guided DL and DA approach to make 7-day probabilistic forecasts of daily maximum water temperature in the Delaware River Basin in support of water management decisions. Our modeling system produced forecasts of daily maximum water temperature with an average root mean squared error (RMSE) from 1.1 to 1.4°C for 1-day-ahead and 1.4 to 1.9°C for 7-day-ahead forecasts across all sites. The DA algorithm marginally improved forecast performance when compared with forecasts produced using the process-guided DL model alone (0%–14% lower RMSE with the DA algorithm). Across all sites and lead times, 65%–82% of observations were within 90% forecast confidence intervals, which allowed managers to anticipate probability of exceedances of ecologically relevant thresholds and aid in decisions about releasing reservoir water downstream. The flexibility of DL models shows promise for forecasting other important environmental variables and aid in decision-making.     

Integrated assessment of river health based on water quality, aquatic life and physical habitat

The health conditions of Liao River were assessed using 25 sampling sites in April 2005, with water quality index, biotic index and physical habitat quality index. Based on the method of cluster analysis (CA) for water quality indices, it revealed that heavily polluted sites of Liao River are located at estuary and mainstream. The aquatic species surveyed were attached algae and benthic invertebrates. The result showed that the diversity and biomass of attached algae and benthic index of biotic integrity (B-IBI) were degrading as the chemical and physical quality of water bodies deteriorating. Physiochemical parameters, BOD5, CODCr, TN, TP, NH3-N, DO, petroleum hydrocarbon and conductivity, were statistically analyzed with principal component analysis and correlation analysis. The statistical results were incorporated into the integrated assessing water quality index, combining fecal coliform count, attached algae diversity, B-IBI and physical habitat quality score. A comprehensive integrated assessing system of river ecological health was established. Based on the systimetic assesment, the assessed sites are categorized into 9 “healthy” and “sub-healthy” sites and 8 “sub-sick” and “sick” sites.     

若尔盖西部草甸的基本类型、特点及近几十年来的变化

2000年8月对若尔盖西部草地的调查，确定了该地18个草丛类型（不包括典型的沼泽植被）。经群丛间Pearson最大相关系数配合生境作图，将该地区的草地群丛分成3大类，即沼生草地，中生性草甸和旱生性草地。各群丛的SW指数，物种丰富度，地上生物量，裸地面积按照生境序列作图，显示中性草甸具有最高的物种丰富度和地上生物量。群丛C和J分别是沼生和旱生植被与中生性草甸之间的拐点式过渡类型，其物种丰富度明显比周期的群丛低，生境转换关键种分别为鹅绒委陵菜和垂穗披碱草。在草地物种组成上，杂类草占81．3％，莎草类仅占6．8％；群丛建群种方面，杂类草占61％，莎草类占28％；在次优势种方面，杂类草和禾草所占比重都有所增加。草原成分出现在丛中生至旱生的群丛中，在有些群丛中甚至成为次优势种。沼泽消退，黄河河道附近沙化以及过牧的阳坡山地生长带刺的旱生化植被，说明当地正经历着干旱化的过程，原因不仅有自然的还有人为的，特别是草地的过度使用。最后对当地草场的管理及发展提出了一些建议。图3表2参20     

Habitat Split as a Cause of Local Population Declines of Amphibians with Aquatic Larvae

Abstract:  Most amphibian species have biphasic life histories and undergo an ontogenetic shift from aquatic to terrestrial habitats. In deforested landscapes, streams and forest fragments are frequently disjunct, jeopardizing the life cycle of forest-associated amphibians with aquatic larvae. We tested the impact of habitat split—defined as human-induced disconnection between habitats used by different life-history stages of a species—on four forest-associated amphibian species in a severely fragmented landscape of the Brazilian Atlantic Forest. We surveyed amphibians in forest fragments with and without streams (referred to as wet and dry fragments, respectively), including the adjacent grass-field matrix. Our comparison of capture rates in dry fragments and nearby streams in the matrix allowed us to evaluate the number of individuals that engaged in high-risk migrations through nonforested habitats. Adult amphibians moved from dry fragments to matrix streams at the beginning of the rainy season, reproduced, and returned at the end of the breeding period. Juveniles of the year moved to dry fragments along with adults. These risky reproductive migrations through nonforested habitats that expose individuals to dehydration, predation, and other hazards may cause population declines in dry fragments. Indeed, capture rates were significantly lower in dry fragments compared with wet fragments. Declining amphibians would strongly benefit from investments in the conservation and restoration of riparian vegetation and corridors linking breeding and nonbreeding areas.     

Ants as a Measure of Effectiveness of Habitat Conservation Planning in Southern California

Abstract: In the United States multispecies habitat conservation plans were meant to be the solution to conflicts between economic development and protection of biological diversity. Although now widely applied, questions exist concerning the scientific credibility of the conservation planning process and effectiveness of the plans. We used ants to assess performance of one of the first regional conservation plans developed in the United States, the Orange County Central‐Coastal Natural Community Conservation Plan (NCCP), in meeting its broader conservation objectives of biodiversity and ecosystem‐level protection. We collected pitfall data on ants for over 3 years on 172 sites established across a network of conservation lands in coastal southern California. Although recovered native ant diversity for the study area was high, site‐occupancy models indicated the invasive and ecologically disruptive Argentine ant (Linepithema humile) was present at 29% of sites, and sites located within 200 m of urban and agricultural areas were more likely to have been invaded. Within invaded sites, native ants were largely displaced, and their median species richness declined by more than 60% compared with uninvaded sites. At the time of planning, 24% of the 15,133‐ha reserve system established by Orange County NCCP fell within 200 m of an urban or agricultural edge. With complete build out of lands surrounding the reserve, the proportion of the reserve system vulnerable to invasion will grow to 44%. Our data indicate that simply protecting designated areas from development is not enough. If habitat conservation plans are to fulfill their conservation promise of ecosystem‐level protection, a more‐integrated and systematic approach to the process of habitat conservation planning is needed.     

Defining Historical Baselines for Conservation: Ecological Changes Since European Settlement on Vancouver Island,Canada

Abstract: Conservation and restoration goals are often defined by historical baseline conditions that occurred prior to a particular period of human disturbance, such as European settlement in North America. Nevertheless, if ecosystems were heavily influenced by native peoples prior to European settlement, conservation efforts may require active management rather than simple removal of or reductions in recent forms of disturbance. We used pre‐European settlement land survey records (1859–1874) and contemporary vegetation surveys to assess changes over the past 150 years in tree species and habitat composition, forest density, and tree size structure on southern Vancouver Island and Saltspring Island, British Columbia, Canada. Several lines of evidence support the hypothesis that frequent historical burning by native peoples, and subsequent fire suppression, have played dominant roles in shaping this landscape. First, the relative frequency of fire‐sensitive species (e.g., cedar [Thuja plicata]) has increased, whereas fire‐tolerant species (e.g., Douglas‐fir [Pseudotsuga menziesii]) have decreased. Tree density has increased 2‐fold, and the proportion of the landscape in forest has greatly increased at the expense of open habitats (plains, savannas), which today contain most of the region's threatened species. Finally, the frequency distribution of tree size has shifted from unimodal to monotonically decreasing, which suggests removal of an important barrier to tree recruitment. In addition, although most of the open habitats are associated with Garry oak (Quercus garryana) at present, most of the open habitats prior to European settlement were associated with Douglas‐fir, which suggests that the current focus on Garry oak as a flagship for the many rare species in savannas may be misguided. Overall, our results indicate that the maintenance and restoration of open habitats will require active management and that historical records can provide critical guidance to such efforts.     

基于景观中性模型的不同竞争力外来种入侵对栖息地毁坏的响应

栖息地毁坏和生物入侵被认为是全球物种多样性的两大威胁,也是当前研究的热点。同时,两者的共同作用将比单独作用所带来的物种多样性丧失更大。本文基于竞争-扩散均衡机制,考虑了外来种的不同竞争力,结合景观中性模型和元胞自动机模型,模拟了外来种入侵对栖息地毁坏（栖息地破碎和面积丧失）的响应。研究结果表明：1）外来种入侵成功将首先威胁竞争力与其相邻的弱物种;2）栖息地毁坏与种间竞争共同决定着外来种入侵的成功与否。当栖息地破碎促进了与外来种竞争力相邻的本地强物种时,将会抑制入侵;当其抑制了与外来种竞争力相邻的本地强物种时,则会促进入侵。当栖息地丧失促进了外来种相邻的本地强物种时,将会抑制入侵;当栖息地丧失抑制了外来种相邻的本地强物种,将一定程度地促进入侵,但随着丧失面积的增加,则转为抑制。因此,为了抑制不同竞争力的外来种入侵,应采取不同的栖息地保护策略,并保护和促进其竞争力相邻的本地强物种。     

沙田柚根围AM真菌的生境适宜性和季节变化性

以山地长寿沙田柚成年果树为对象,研究不同生境和季节对丛枝菌根(Arbuscular mycorrhiza,AM)真菌侵染以及根围土壤中AM真菌孢子密度的影响.试验结果表明,不同生境下,菌根侵染率和AM真菌孢子密度都是以梯田最高,坡地次之,洼地最低;在坡地和洼地生境下,生草区均高于清耕区.两块试验地AM真菌的菌丝侵染率均为夏季最高(16.8%±1.9%和16.0%±1.8%),秋季次之,冬季最低;丛枝和泡囊的形成也是夏/秋季较高,春/冬季较低;而根围土壤中AM真菌孢子密度则是秋季最高[(159±19)个/100 g和(167±17)个/100 g],夏季次之,冬季最低.总之,对于长寿沙田柚成年果树,AM真菌的菌根侵染率在夏季梯田最高,根围土壤中的AM真菌孢子密度在秋季梯田最高;在坡地和洼地生境中,生草处理均可显著提高菌根侵染率和AM真菌孢子密度.图4参27     

Permeability of Roads to Movement of Scrubland Lizards and Small Mammals

A primary objective of road ecology is to understand and predict how roads affect connectivity of wildlife populations. Road avoidance behavior can fragment populations, whereas lack of road avoidance can result in high mortality due to wildlife‐vehicle collisions. Many small animal species focus their activities to particular microhabitats within their larger habitat. We sought to assess how different types of roads affect the movement of small vertebrates and to explore whether responses to roads may be predictable on the basis of animal life history or microhabitat preferences preferences. We tracked the movements of fluorescently marked animals at 24 sites distributed among 3 road types: low‐use dirt, low‐use secondary paved, and rural 2‐lane highway. Most data we collected were on the San Diego pocket mouse (Chaetodipus fallax), cactus mouse (Peromyscus eremicus), western fence lizard (Sceloporus occidentalis), orange‐throated whiptail (Aspidoscelis hyperythra), Dulzura kangaroo rat (Dipodomys simulans) (dirt, secondary paved), and deer mouse (Peromyscus maniculatus) (highway only). San Diego pocket mice and cactus mice moved onto dirt roads but not onto a low‐use paved road of similar width or onto the highway, indicating they avoid paved road substrate. Both lizard species moved onto the dirt and secondary paved roads but avoided the rural 2‐lane rural highway, indicating they may avoid noise, vibration, or visual disturbance from a steady flow of traffic. Kangaroo rats did not avoid the dirt or secondary paved roads. Overall, dirt and secondary roads were more permeable to species that prefer to forage or bask in open areas of their habitat, rather than under the cover of rocks or shrubs. However, all study species avoided the rural 2‐lane highway. Our results suggest that microhabitat use preferences and road substrate help predict species responses to low‐use roads, but roads with heavy traffic may deter movement of a much wider range of small animal species.