Use of an Airborne Lidar System to Model Plant Species Composition and Diversity of Mediterranean Oak Forests

Abstract: Airborne lidar is a remote‐sensing tool of increasing importance in ecological and conservation research due to its ability to characterize three‐dimensional vegetation structure. If different aspects of plant species diversity and composition can be related to vegetation structure, landscape‐level assessments of plant communities may be possible. We examined this possibility for Mediterranean oak forests in southern Portugal, which are rich in biological diversity but also threatened. We compared data from a discrete, first‐and‐last return lidar data set collected for 31 plots of cork oak (Quercus suber) and Algerian oak (Quercus canariensis) forest with field data to test whether lidar can be used to predict the vertical structure of vegetation, diversity of plant species, and community type. Lidar‐ and field‐measured structural data were significantly correlated (up to r= 0.85). Diversity of forest species was significantly associated with lidar‐measured vegetation height (R²= 0.50, p < 0.001). Clustering and ordination of the species data pointed to the presence of 2 main forest classes that could be discriminated with an accuracy of 89% on the basis of lidar data. Lidar can be applied widely for mapping of habitat and assessments of habitat condition (e.g., in support of the European Species and Habitats Directive [92/43/EEC]). However, particular attention needs to be paid to issues of survey design: density of lidar points and geospatial accuracy of ground‐truthing and its timing relative to acquisition of lidar data.     

Knowledge gain and behavioral change in citizen-science programs

Citizen-science programs are often touted as useful for advancing conservation literacy, scientific knowledge, and increasing scientific-reasoning skills among the public. Guidelines for collaboration among scientists and the public are lacking and the extent to which these citizen-science initiatives change behavior is relatively unstudied. Over two years, we studied 82 participants in a three-day program that included education about non-native invasive plants and collection of data on the occurrence of those plants. Volunteers were given background knowledge about invasive plant ecology and trained on a specific protocol for collecting invasive plant data. They then collected data and later gathered as a group to analyze data and discuss responsible environmental behavior with respect to invasive plants. We tested whether participants without experience in plant identification and with little knowledge of invasive plants increased their knowledge of invasive species ecology, participation increased knowledge of scientific methods, and participation affected behavior. Knowledge of invasive plants increased on average 24%, but participation was insufficient to increase understanding of how scientific research is conducted. Participants reported increased ability to recognize invasive plants and increased awareness of effects of invasive plants on the environment, but this translated into little change in behavior regarding invasive plants. Potential conflicts between scientific goals, educational goals, and the motivation of participants must be considered during program design.     

Effects of Artificial Sand Fixing on Community Characteristics of a Rare Desert Shrub

Eremosparton songoricum (Fabaceae) is a rare, native, clonal small shrub of the deserts of central Asia. Although human activities have greatly fragmented the distribution of E. songoricum, it occurs in areas where artificial sand fixing (AS) has been implemented. We sought to explore whether AS promotes survival and growth of E. songoricum. In the Gurbantunggut Desert of northwestern China in June 2010, we established 10 plots in an area where sand fixing occurred (5–10 years previously) and 11 plots on original sand substrate on which some plants had settled without fixing sand. Sand fixing changed soil properties and biological characteristics in sand‐fixed plots. The soil surface where sand fixing occurred was covered by algal crusts and some lichen, but not bare sand (BS). Soil nutrients; water content of deep soil (30–150 cm); overall plant and herbaceous species richness, diversity, abundance, and cover; above‐ and belowground biomass; and cover, biomass, and height of E. songoricum in the sand‐fixed plots were significantly greater than in plots of BS. However, distribution of E. songoricum individuals in the 2 types of plots did not differ. Our results indicate AS may enhance survival of E. songoricum and increase the overall diversity and stability of the desert plant community. We suggest AS as a way to protect this rare desert plant in situ. Efectos de la Fijación Artificial de Arena sobre las Características de la Comunidad de un Arbusto Desértico Raro     

Use of Ancient Sedimentary DNA as a Novel Conservation Tool for High‐Altitude Tropical Biodiversity

Conservation of biodiversity may in the future increasingly depend upon the availability of scientific information to set suitable restoration targets. In traditional paleoecology, sediment‐based pollen provides a means to define preanthropogenic impact conditions, but problems in establishing the exact provenance and ecologically meaningful levels of taxonomic resolution of the evidence are limiting. We explored the extent to which the use of sedimentary ancient DNA (sedaDNA) may complement pollen data in reconstructing past alpine environments in the tropics. We constructed a record of afro‐alpine plants retrieved from DNA preserved in sediment cores from 2 volcanic crater sites in the Albertine Rift, eastern Africa. The record extended well beyond the onset of substantial anthropogenic effects on tropical mountains. To ensure high‐quality taxonomic inference from the sedaDNA sequences, we built an extensive DNA reference library covering the majority of the afro‐alpine flora, by sequencing DNA from taxonomically verified specimens. Comparisons with pollen records from the same sediment cores showed that plant diversity recovered with sedaDNA improved vegetation reconstructions based on pollen records by revealing both additional taxa and providing increased taxonomic resolution. Furthermore, combining the 2 measures assisted in distinguishing vegetation change at different geographic scales; sedaDNA almost exclusively reflects local vegetation, whereas pollen can potentially originate from a wide area that in highlands in particular can span several ecozones. Our results suggest that sedaDNA may provide information on restoration targets and the nature and magnitude of human‐induced environmental changes, including in high conservation priority, biodiversity hotspots, where understanding of preanthropogenic impact (or reference) conditions is highly limited. Uso de ADN Sedimentario Antiguo como una Herramienta Novedosa de Conservación para la Biodiversidad Tropical de Grandes Altitudes     

Conservation impacts of commercial cultivation of endangered and overharvested plants

Overharvesting is one of the greatest threats to species survival. Farming overharvested species is a conservation strategy that can meet growing market demand and conserve wild populations of the target species. This strategy is compatible with the international community's desire to uphold the right of local communities to use biological resources to support their livelihoods. However, studies investigating whether farming can alleviate poaching pressure have focused almost exclusively on animals. To address the shortfall in plant-focused studies, we compiled information on commercial cultivation of threatened plants to assess its conservation benefits. Because China's rising middle class has rapidly intensified demand for wildlife products, we searched the scientific literature published in Chinese (China National Knowledge Infrastructure and Baidu) and in English. We found 32 reports that contained data on 193 internationally or nationally threatened plant species that were under commercial cultivation. These reports showed that cultivations of 82% of the 193 species were sustained by collecting whole plants from the wild periodically or continuously. Although based on a small sample size, species that were maintained in cultivation only through artificial propagation or seeds collected in the wild were likely associated with a reported reduction in wild harvesting of whole plants. Even so, results of correlation analyses suggested that production system, scale, and when a species began being cultivated had little effect on conservation status of the species, either globally or in China. However, species brought into cultivation relatively recently and on a smaller scale were more likely to have undergone a reduction in collecting pressure. Farming of nonmedicinal plants was most problematic for species conservation because wild plants were laundered (i.e., sold as cultivated plants). For effective conservation, policy to guide cultivation operations based on the target species’ biological characteristics, cultural significance, market demand, and conservation status is needed.     

Traditional Plant Harvesting in Contemporary Fragmented and Urban Landscapes

Abstract: Ecosystem fragmentation and destruction can lead to restrictive administration policies on traditional harvesting by indigenous peoples from remaining ecosystem tracts. In New Zealand, concerns about endangered species and governmental policies that focus on species and ecosystem preservation have resulted in severely curtailed traditional harvesting rights. Although provision has been made for limited gathering of traditional plants from government‐administered conservation lands, it is unclear how much harvesting is undertaken on these lands and elsewhere and what this harvest might consist of. We interviewed seven expert Maori elders from the Waikato, New Zealand, to identify plant species they currently harvested and from where. We compared these data with the data we collected on permits issued for plant collecting on conservation lands in the same region. We sought to gain information on indigenous plant harvesting to determine the extent of permitted harvesting from conservation lands in the Waikato and to identify issues that might affect plant harvesting and management. Elders identified 58 species they harvest regularly or consider culturally important; over 50% of these species are harvested for medicinal use. Permit data from 1996 to 2006 indicated no apparent relationship between species of reported cultural significance and the number of permits issued for each of these species. Currently, few plant species are harvested from conservation lands, although some unofficial harvesting occurs. Elders instead reported that medicinal plants are frequently collected from urban and other public areas. They reported that plant species used for dyeing, carving, and weaving are difficult to access. Elders also discussed concerns such as spraying of roadsides, which resulted in the death of medicinal species, and use of commercial hybrids in urban planning. Local government may have an increasingly important role in supporting native traditions through urban planning, which takes account of cultural harvesting needs while potentially reducing future harvesting pressure on conservation lands. We suggest that active participation by the Māori community in the development and management of urban harvesting resources will result in positive outcomes.     

Resolving whether botanic gardens are on the road to conservation or a pathway for plant invasions

A global conservation goal is to understand the pathways through which invasive species are introduced into new regions. Botanic gardens are a pathway for the introduction of invasive non‐native plants, but a quantitative assessment of the risks they pose has not been performed. I analyzed data on the living collections of over 3000 botanic gardens worldwide to quantify the temporal trend in the representation of non‐native species; the relative composition of threatened, ornamental, or invasive non‐native plant species; and the frequency with which botanic gardens implement procedures to address invasive species. While almost all of the world's worst invasive non‐native plants occurred in one or more living collections (99%), less than one‐quarter of red‐listed threatened species were cultivated (23%). Even when cultivated, individual threatened species occurred in few living collections (7.3), while non‐native species were on average grown in 6 times as many botanic gardens (44.3). As a result, a botanic garden could, on average, cultivate four times as many invasive non‐native species (20) as red‐listed threatened species (5). Although the risk posed by a single living collection is small, the probability of invasion increases with the number of botanic gardens within a region. Thus, while both the size of living collections and the proportion of non‐native species cultivated have declined during the 20th century, this reduction in risk is offset by the 10‐fold increase in the number of botanic gardens established worldwide. Unfortunately, botanic gardens rarely implement regional codes of conduct to prevent plant invasions, few have an invasive species policy, and there is limited monitoring of garden escapes. This lack of preparedness is of particular concern given the rapid increase in living collections worldwide since 1950, particularly in South America and Asia, and highlights past patterns of introduction will be a poor guide to determining future invasion risks.     

Effectiveness of amphibians as biodiversity surrogates in pond conservation

Amphibian decline has led to worldwide conservation efforts, including the identification and designation of sites for their protection. These sites could also play an important role in the conservation of other freshwater taxa. In 89 ponds in Switzerland, we assessed the effectiveness of amphibians as a surrogate for 4 taxonomic groups that occur in the same freshwater ecosystems as amphibians: dragonflies, aquatic beetles, aquatic gastropods, and aquatic plants. The ponds were all of high value for amphibian conservation. Cross‐taxon correlations were tested for species richness and conservation value, and Mantel tests were used to investigate community congruence. Species richness, conservation value, and community composition of amphibians were weakly congruent with these measures for the other taxonomic groups. Paired comparisons for the 5 groups considered showed that for each metric, amphibians had the lowest degree of congruence. Our results imply that site designation for amphibian conservation will not necessarily provide protection for freshwater biodiversity as a whole. To provide adequate protection for freshwater species, we recommend other taxonomic groups be considered in addition to amphibians in the prioritization and site designation process.     

A new method for broad-scale modeling and projection of plant assemblages under climatic,biotic, and environmental cofiltering

There is increasing interestin broad-scale analysis, modeling, and prediction of the distribution and composition of plant species assemblages under climatic, environmental, and biotic change, particularly for conservation purposes. We devised a method to reliably predict the impact of climate change on large assemblages of plant communities, while also considering competing biotic and environmental factors. To this purpose, we first used multilabel algorithms in order to convert the task of explaining a large assemblage of plant communities into a classification framework able to capture with high cross-validated accuracy the pattern of species distributions under a composite set of biotic and abiotic factors. We applied our model to a large set of plant communities in the Swiss Alps. Our model explained presences and absences of 175 plant species in 608 plots with >87% cross-validated accuracy, predicted decreases in α, β, and γ diversity by 2040 under both moderate and extreme climate scenarios, and identified likely advantaged and disadvantaged plant species under climate change. Multilabel variable selection revealed the overriding importance of topography, soils, and temperature extremes (rather than averages) in determining the distribution of plant species in the study area and their response to climate change. Our method addressed a number of challenging research problems, such as scaling to large numbers of species, considering species relationships and rarity, and addressing an overwhelming proportion of absences in presence–absence matrices. By handling hundreds to thousands of plants and plots simultaneously over large areas, our method can inform broad-scale conservation of plant species under climate change because it allows species that require urgent conservation action (assisted migration, seed conservation, and ex situ conservation) to be detected and prioritized. Our method also increases the practicality of assisted colonization of plant species by helping to prevent ill-advised introduction of plant species with limited future survival probability.     

Evidence of Local Adaptation in the Demographic Response of American Ginseng to Interannual Temperature Variation

Abstract: Bioclimatic envelope models of species’ responses to climate change are used to predict how species will respond to increasing temperatures. These models are frequently based on the assumption that the northern and southern boundaries of a species’ range define its thermal niche. However, this assumption may be violated if populations are adapted to local temperature regimes and have evolved population‐specific thermal optima. Considering the prevalence of local adaptation, the assumption of a species‐wide thermal optimum may be violated for many species. We used spatially and temporally extensive demographic data for American ginseng (Panax quinquefolius L.) to examine range‐wide variation in response of population growth rate (λ) to climatic factors. Our results suggest adaptation to local temperature, but not precipitation. For each population, λ was maximized when annual temperatures were similar to site‐specific, long‐term mean temperatures. Populations from disparate climatic zones responded differently to temperature variation, and there was a linear relation between population‐level thermal optima and the 30‐year mean temperature at each site. For species that are locally adapted to temperature, bioclimatic envelope models may underestimate the extent to which increasing temperatures will decrease population growth rate. Because any directional change from long‐term mean temperatures will decrease population growth rates, all populations throughout a species’ range will be adversely affected by temperature increase, not just populations at southern and low‐elevation boundaries. Additionally, when a species’ local thermal niche is narrower than its range‐wide thermal niche, a smaller temperature increase than would be predicted by bioclimatic envelope approaches may be sufficient to decrease population growth.